ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah59l22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 323 bits (163), Expect = 1e-85 Identities = 194/202 (96%), Gaps = 3/202 (1%) Strand = Plus / Minus Query: 1 attaacaaaacatgtcccagtcaatcgcttggtatgcgatgcggacttaggtaggtaaaa 60 |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 7722 attaacaaaacatg-cccag-caatcgcttgg-atgcgatgcggacttaggtaggtaaaa 7666 Query: 61 catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagntgccgncgtcgctcct 120 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 7665 catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcct 7606 Query: 121 tgccgnngggtcgtagttcttggcattttggtcggngcaaccttccggcacgggcaaagt 180 ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 7605 tgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagt 7546 Query: 181 accttgctgtgctcctttacct 202 |||||||||||||||||||||| Sbjct: 7545 accttgctgtgctcctttacct 7524 Score = 44.1 bits (22), Expect = 0.18 Identities = 24/25 (96%) Strand = Plus / Minus Query: 199 acctnctcctatgcagcaagagatg 223 |||| |||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatg 7331
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 321 bits (162), Expect = 5e-85 Identities = 193/201 (96%), Gaps = 3/201 (1%) Strand = Plus / Minus Query: 1 attaacaaaacatgtcccagtcaatcgcttggtatgcgatgcggacttaggtaggtaaaa 60 |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 1362 attaacaaaacatg-cccag-caatcgcttgg-atgcgatgcggacttaggtaggtaaaa 1306 Query: 61 catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagntgccgncgtcgctcct 120 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 1305 catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcct 1246 Query: 121 tgccgnngggtcgtagttcttggcattttggtcggngcaaccttccggcacgggcaaagt 180 ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1245 tgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagt 1186 Query: 181 accttgctgtgctcctttacc 201 ||||||||||||||||||||| Sbjct: 1185 accttgctgtgctcctttacc 1165
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 317 bits (160), Expect = 8e-84 Identities = 214/226 (94%), Gaps = 6/226 (2%) Strand = Plus / Minus Query: 1 attaacaaaacatgtcccagtcaatcgcttggtatgcgatgcggacttag-gtaggtaaa 59 |||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 1671 attaacaaaacatg-cccag-caatcgcttgg-atgcgatgcggacttagtgtaggtaaa 1615 Query: 60 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagntgccg-ncgtcgctc 118 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 1614 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgctc 1555 Query: 119 cttgccgnngggtcgtagttcttggcattttggtcggngcaaccttccggca-cgggcaa 177 ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 1554 cttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcgggcaa 1495 Query: 178 agtaccttgctgtgctcctttacctnctcctatgcagcaagagatg 223 ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1494 agtaccttgctgtgctcctttacctcctcctatgcagcaagagatg 1449
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 204 bits (103), Expect = 8e-50 Identities = 201/229 (87%), Gaps = 10/229 (4%) Strand = Plus / Minus Query: 1 attaacaaaacatgtcccagtcaatcgcttggtatgcgatgcgg-acttaggta-----g 54 |||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| | Sbjct: 742 attaacaaaacatg-cccag-caatcgcttgg-atgcgatgcggtacttaggtacaaagg 686 Query: 55 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagntgccgncgtc 114 ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| Sbjct: 685 ataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 627 Query: 115 gctccttgccgnngggtcgtagttcttggcattttggtcggngcaaccttccggcacggg 174 ||||| |||| |||||| ||||||||||| | ||||||| ||| ||| |||| || || Sbjct: 626 actcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacagg 567 Query: 175 caaagtaccttgctgtgctcctttacctnctcctatgcagcaagagatg 223 |||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct: 566 caaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatg 518
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 204 bits (103), Expect = 8e-50 Identities = 201/229 (87%), Gaps = 10/229 (4%) Strand = Plus / Minus Query: 1 attaacaaaacatgtcccagtcaatcgcttggtatgcgatgcgg-acttaggta-----g 54 |||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| | Sbjct: 1592 attaacaaaacatg-cccag-caatcgcttgg-atgcgatgcggtacttaggtacaaagg 1536 Query: 55 gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagntgccgncgtc 114 ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| Sbjct: 1535 ataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 1477 Query: 115 gctccttgccgnngggtcgtagttcttggcattttggtcggngcaaccttccggcacggg 174 ||||| |||| |||||| ||||||||||| | ||||||| ||| ||| |||| || || Sbjct: 1476 actcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacagg 1417 Query: 175 caaagtaccttgctgtgctcctttacctnctcctatgcagcaagagatg 223 |||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct: 1416 caaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatg 1368
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 184 bits (93), Expect = 8e-44 Identities = 135/151 (89%) Strand = Plus / Minus Query: 73 aaagtggcatgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtc 132 ||||||||||||||||||||||||||||||| ||||| |||||||||| || | ||||| Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468 Query: 133 gtagttcttggcattttggtcggngcaaccttccggcacgggcaaagtaccttgctgtgc 192 | |||||||||||| |||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408 Query: 193 tcctttacctnctcctatgcagcaagagatg 223 |||||||||| |||||||||||||||||||| Sbjct: 1407 tcctttacctcctcctatgcagcaagagatg 1377
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 147 bits (74), Expect = 2e-32 Identities = 114/129 (88%) Strand = Plus / Minus Query: 73 aaagtggcatgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtc 132 ||||||||||||||||||||||||||||||| ||||| |||||||||| || | ||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 133 gtagttcttggcattttggtcggngcaaccttccggcacgggcaaagtaccttgctgtgc 192 | |||||||||||| |||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 193 tcctttacc 201 ||||||||| Sbjct: 1369 tcctttacc 1361
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Plus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Plus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Plus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Plus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 103 bits (52), Expect = 2e-19 Identities = 83/95 (87%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 91.7 bits (46), Expect = 9e-16 Identities = 77/89 (86%) Strand = Plus / Minus Query: 88 aaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttcttggcatt 147 |||||||||||||||| ||||| |||||||||| |||| |||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 148 ttggtcggngcaaccttccggcacgggca 176 |||||| ||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 87.7 bits (44), Expect = 1e-14 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||||||||||||||| ||||| |||||||||| |||| |||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 79.8 bits (40), Expect = 3e-12 Identities = 80/95 (84%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||||||| | ||||||||| ||||| |||||||||| |||| |||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 56.0 bits (28), Expect = 5e-05 Identities = 77/95 (81%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||| ||||||||||||||| ||| | ||| |||| | |||| ||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 56.0 bits (28), Expect = 5e-05 Identities = 77/95 (81%) Strand = Plus / Minus Query: 82 tgcttaaaaggtgtaaaggcagntgccgncgtcgctccttgccgnngggtcgtagttctt 141 |||||| ||||||||||||||| ||| | ||| |||| | |||| ||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 142 ggcattttggtcggngcaaccttccggcacgggca 176 |||| |||||| ||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.72 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 aaacatcagatattaaaagtg 78 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.72 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 aaacatcagatattaaaagtg 78 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 0.72 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 aaacatcagatattaaaagtg 78 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tcagatattaaaagtggcat 82 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 tcagatattaaaagtggcat 82 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 tcagatattaaaagtggcat 82 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tggcatgcttaaaaggtgta 96 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 atcagatattaaaagtggcatgct 85 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,286,670 Number of Sequences: 3902068 Number of extensions: 1286670 Number of successful extensions: 86189 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86003 Number of HSP's gapped (non-prelim): 161 length of query: 223 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 201 effective length of database: 17,147,199,772 effective search space: 3446587154172 effective search space used: 3446587154172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
