ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah59l19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 932 bits (470), Expect = 0.0 Identities = 528/547 (96%), Gaps = 4/547 (0%) Strand = Plus / Minus Query: 43 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag-gtaggtaa 101 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1675 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagtgtaggtaa 1616 Query: 102 aacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt-cgtcgct 160 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1615 aacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgct 1556 Query: 161 ccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggca-cgggca 219 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1555 ccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcgggca 1496 Query: 220 aagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgt-gtat 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1495 aagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgttgtat 1436 Query: 279 ggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcaccca 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1435 ggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcaccca 1376 Query: 339 gagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1375 gagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcct 1316 Query: 399 ggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaagg 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1315 ggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaagg 1256 Query: 459 tcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagc 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1255 tcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagc 1196 Query: 519 cgacccacttgcncacctnatngnnnnacacccnancacncanagcaccnaaaaagnnaa 578 |||||||||||| ||||| || | |||||| | ||| || |||||| |||||| || Sbjct: 1195 cgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaa 1136 Query: 579 tgnattg 585 || |||| Sbjct: 1135 tggattg 1129
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 733 bits (370), Expect = 0.0 Identities = 495/538 (92%), Gaps = 7/538 (1%) Strand = Plus / Minus Query: 43 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 96 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687 Query: 97 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 156 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628 Query: 157 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 216 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568 Query: 217 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 276 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508 Query: 277 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 336 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448 Query: 337 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 388 Query: 397 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 456 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 387 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 328 Query: 457 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 516 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 327 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 268 Query: 517 gccgacccacttgcncacctnatngnnnnacacccnancacncanagcaccnaaaaag 574 | |||||||||| ||||| | | |||||| | ||| || |||||| |||||| Sbjct: 267 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaag 210
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 733 bits (370), Expect = 0.0 Identities = 495/538 (92%), Gaps = 7/538 (1%) Strand = Plus / Minus Query: 43 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 96 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 97 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 156 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 157 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 216 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 217 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 276 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 277 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 336 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 337 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 397 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 456 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178 Query: 457 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 516 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118 Query: 517 gccgacccacttgcncacctnatngnnnnacacccnancacncanagcaccnaaaaag 574 | |||||||||| ||||| | | |||||| | ||| || |||||| |||||| Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaag 1060
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 589 bits (297), Expect = e-165 Identities = 321/333 (96%) Strand = Plus / Minus Query: 242 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 302 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 362 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 422 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 482 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcncacctnatng 541 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 542 nnnnacacccnancacncanagcaccnaaaaag 574 |||||| | ||| || |||||| |||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaag 7023 Score = 406 bits (205), Expect = e-110 Identities = 236/241 (97%), Gaps = 4/241 (1%) Strand = Plus / Minus Query: 7 ctttgccaaa-gggtatactgcaatatatttagnagnatatattaacaaaacatgcccag 65 |||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 7760 ctttgccaaatgggtataca-caatatatttag-ag-atatattaacaaaacatgcccag 7704 Query: 66 caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7703 caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 7644 Query: 126 gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttg 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7643 gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttg 7584 Query: 186 gcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacct 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7583 gcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacct 7524 Query: 246 c 246 | Sbjct: 7523 c 7523 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 368 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 427 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 428 ttctcgactgtcatctttggctgctcgaa 456 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 541 bits (273), Expect = e-151 Identities = 419/464 (90%), Gaps = 9/464 (1%) Strand = Plus / Minus Query: 57 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 110 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 111 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 169 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 170 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 229 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 230 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 289 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 290 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 349 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 350 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 409 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 410 tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 469 || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176 Query: 470 tcccgcgagttcaccagcctcttgccaatgttctcgattccggt 513 |||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggt 1132
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 494 bits (249), Expect = e-136 Identities = 279/294 (94%) Strand = Plus / Minus Query: 292 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 352 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 412 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 472 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcn 531 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 532 cacctnatngnnnnacacccnancacncanagcaccnaaaaagnnaatgnattg 585 ||||| || | |||||| | ||| || |||||| |||||| |||| |||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattg 874 Score = 400 bits (202), Expect = e-108 Identities = 202/202 (100%) Strand = Plus / Minus Query: 43 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaa 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1366 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaa 1307 Query: 103 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcc 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1306 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcc 1247 Query: 163 ttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaag 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1246 ttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaag 1187 Query: 223 taccttgctgtgctcctttacc 244 |||||||||||||||||||||| Sbjct: 1186 taccttgctgtgctcctttacc 1165
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 446 bits (225), Expect = e-122 Identities = 282/305 (92%) Strand = Plus / Minus Query: 270 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 329 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 330 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 390 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 450 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 509 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 510 cggtagagccgacccacttgcncacctnatngnnnnacacccnancacncanagcaccna 569 |||||||| |||||||||| ||||| | | |||||| | ||| || |||||| | Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 570 aaaag 574 ||||| Sbjct: 8 aaaag 4
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 313 bits (158), Expect = 4e-82 Identities = 206/222 (92%) Strand = Plus / Minus Query: 292 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 351 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 352 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 411 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 412 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 471 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 472 ccgcgagttcaccagcctcttgccaatgttctcgattccggt 513 |||||||||||||||||||||||| |||||||| |||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggt 1142 Score = 176 bits (89), Expect = 5e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 116 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 175 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 176 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 235 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 236 tcctttacc 244 ||||||||| Sbjct: 1369 tcctttacc 1361
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 185 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 242 acctcctcct 251 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 351 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 410 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 411 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 470 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 471 cccgcgagttcaccagcctcttgccaatgttctc 504 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 185 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 242 acctcctcct 251 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 351 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 410 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 411 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 470 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 471 cccgcgagttcaccagcctcttgccaatgttctc 504 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 185 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 242 acctcctcct 251 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 351 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 410 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 411 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 470 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 471 cccgcgagttcaccagcctcttgccaatgttctc 504 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 185 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 242 acctcctcct 251 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 351 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 410 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 411 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 470 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 471 cccgcgagttcaccagcctcttgccaatgttctc 504 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 185 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 242 acctcctcct 251 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 351 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 410 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 411 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 470 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 471 cccgcgagttcaccagcctcttgccaatgttctc 504 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 288 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 347 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 348 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 407 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 408 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 467 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 468 cgtcccgcgagttcaccagcctcttgccaatgttctc 504 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 143 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 202 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 203 accttccggcacggg 217 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 476 gagttcaccagcctcttgccaatgttctc 504 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 288 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 347 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 348 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 407 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 408 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 467 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 468 cgtcccgcgagttcaccagcctcttgccaatgttctc 504 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 143 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 202 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 203 accttccggcacggg 217 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 476 gagttcaccagcctcttgccaatgttctc 504 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 351 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 410 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 411 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 470 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 471 cccgcgagttcaccagcctcttgccaatgttctc 504 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 293 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 352 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 353 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 412 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 413 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 472 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 473 cgcgagttcaccagcctcttgccaatgttctc 504 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 288 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 347 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 348 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 407 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 408 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 467 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 468 cgtcccgcgagttcaccagcctcttgccaatgttctc 504 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 143 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 202 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 203 accttccggcacggg 217 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 476 gagttcaccagcctcttgccaatgttctc 504 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 288 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 347 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 348 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 407 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 408 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 467 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 468 cgtcccgcgagttcaccagcctcttgccaatgttctc 504 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 143 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 202 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 203 accttccggcacggg 217 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 476 gagttcaccagcctcttgccaatgttctc 504 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 7e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 293 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 352 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 353 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 412 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 413 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 472 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 473 cgcgagttcaccagcctcttgccaatgttctc 504 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 289 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 348 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 349 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 408 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 409 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 468 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 469 gtcccgcgagttcaccagcctcttgcc 495 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 135 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 194 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 195 tcggtgcaaccttc 208 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 351 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 410 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 411 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 470 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 471 cccgcgagttcaccagcctcttgccaatgttctc 504 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 123 bits (62), Expect = 7e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 291 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 350 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 351 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 410 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 411 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 470 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 471 cccgcgagttcaccagcctcttgccaatgttctc 504 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 185 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 241 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 242 acctcctcct 251 ||||||||| Sbjct: 1443 ccctcctcct 1434
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 131 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 190 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 191 ttggtcggtgcaaccttccggcacgggca 219 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 296 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 355 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 356 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 415 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 416 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 475 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 476 gagttcaccagcctcttgcc 495 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 135 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 194 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 195 tcggtgcaaccttc 208 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 7e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 289 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 348 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 349 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 408 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 409 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 468 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 469 gtcccgcgagttcaccagcctctt 492 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 135 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 194 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 195 tcggtgcaaccttc 208 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 4e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 296 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 355 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 356 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 415 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 416 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 475 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 476 gagttcaccagcctctt 492 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 135 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 194 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 195 tcggtgcaaccttc 208 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 297 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 356 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 357 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 416 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 417 actctagcagcttctcgactgtcatctttggctgctcgaa 456 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 297 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 356 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 357 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 416 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 417 actctagcagcttctcgactgtcatctttggctgctcgaa 456 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 297 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 356 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 357 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 416 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 417 actctagcagcttctcgactgtcatctttggctgctcgaa 456 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 368 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 427 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 428 ttctcgactgtcatctttggctgctcgaa 456 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 314 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 373 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 374 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 429 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 125 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 184 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 185 ggcattttggtcggtgcaaccttccggcacgggca 219 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 75.8 bits (38), Expect = 1e-10 Identities = 136/169 (80%) Strand = Plus / Minus Query: 368 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 427 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 428 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 487 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 488 ctcttgccaatgttctcgattccggtagagccgacccacttgcncacct 536 | |||| |||||||||| ||| | |||||||||||||| ||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacct 1074
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 325 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 384 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 385 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 444 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 445 tggctgctcgaa 456 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Minus Query: 317 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 366 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 catcacccagagctgcctggct 351 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX571873.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 15/17 Length = 349107 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ggtgctttgccaaagggtata 23 ||||||||||||||||||||| Sbjct: 8182 ggtgctttgccaaagggtata 8202
>gb|AF346499.1|AF346499 Photorhabdus luminescens strain W14 toxin complex tcc locus, partial sequence Length = 25655 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ggtgctttgccaaagggtata 23 ||||||||||||||||||||| Sbjct: 6014 ggtgctttgccaaagggtata 5994
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 aaacatcagatattaaaagtg 121 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 atgcagcaagagatggtgggt 272 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 368 agctgcacacgcttgacattgtcctgctc 396 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|AF047028.1|AF047028 Photorhabdus luminescens insecticidal toxin complex proteins TccA (tccA), TccB (tccB), TccC (tccC), and TccZ (tccZ) genes, complete cds Length = 11518 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ggtgctttgccaaagggtata 23 ||||||||||||||||||||| Sbjct: 2850 ggtgctttgccaaagggtata 2830
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 aaacatcagatattaaaagtg 121 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 aaacatcagatattaaaagtg 121 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cctttacctcctcctatgca 256 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 catcacccagagctgcctggctca 353 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cctttacctcctcctatgca 256 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 8.1 Identities = 68/84 (80%) Strand = Plus / Minus Query: 326 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 385 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 386 ttgtcctgctcctggacgagcatg 409 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cctttacctcctcctatgca 256 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 gtcagcaagctgcacacgct 380 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tcagatattaaaagtggcat 125 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tcagatattaaaagtggcat 125 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tcagatattaaaagtggcat 125 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 catcacccagagctgcctggctca 353 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 ttgacattgtcctgctcctg 399 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 catcacccagagctgcctggctca 353 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 134 ggtgtaaaggcagctgccgtcgtcgctc 161 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 aaacatgcccagcaatcgcttgga 77 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cctttacctcctcctatgca 256 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 catcacccagagctgcctggctca 353 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 catcacccagagctgcctggctca 353 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 catcacccagagctgcctggctca 353 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tggcatgcttaaaaggtgta 139 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 ttgacattgtcctgctcctg 399 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 catcacccagagctgcctggctca 353 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 cttgctgtgctcctttacctcctc 249 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 cctttacctcctcctatgca 256 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 atcagatattaaaagtggcatgct 128 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,822,427 Number of Sequences: 3902068 Number of extensions: 3822427 Number of successful extensions: 70342 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 70055 Number of HSP's gapped (non-prelim): 239 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
