>dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit, complete cds,
            clone:6, subclone:16
          Length = 5980

 Score =  109 bits (55), Expect = 2e-21
 Identities = 92/103 (89%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                        
Query: 14   atgctccacaacctatgctcgtacataaacagatcatagagaag-aaaattatgctctag 72
            ||||||||||||||||| ||||||| | ||||||||||  |||| |||| |||||||| |
Sbjct: 1399 atgctccacaacctatgttcgtacaaacacagatcataccgaaggaaaaatatgctctgg 1340

                                                       
Query: 73   tcggaaagcagagtcgtggacaaaagtgaagttcacagaagac 115
            |||| |||||||||| ||||||||||||||||||||| |||||
Sbjct: 1339 tcgggaagcagagtcctggacaaaagtgaagttcacaaaagac 1297



 Score =  103 bits (52), Expect = 1e-19
 Identities = 86/96 (89%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                        
Query: 14   atgctccacaacctatgctcgtacataaacagatcatagagaagaaaa-ttatgctctag 72
            ||||||||||||||||| | ||||||| |||||||||| |||| |||| |||||||   |
Sbjct: 4453 atgctccacaacctatgtttgtacatacacagatcatacagaacaaaaattatgcttagg 4394

                                                
Query: 73   tcggaaagcagagtcgtggacaaaagtgaagttcac 108
            |||||||||||||||||||| |||||||||||||||
Sbjct: 4393 tcggaaagcagagtcgtggagaaaagtgaagttcac 4358



 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 91/105 (86%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 16   gctccacaacctatgctcgtacataaacagatcatagagaa-gaaaattatgctctagtc 74
            ||||||||||| ||| ||||||||| ||| || ||| |||| ||||| |||||||| || 
Sbjct: 5800 gctccacaaccaatgttcgtacatacacatattatacagaacgaaaaatatgctctggta 5741

                                                         
Query: 75   ggaaagcagagtcgtggacaaaagtgaagttcacagaagaccttc 119
            || | ||||||||||||| |||||||||||||||| |||||||||
Sbjct: 5740 ggca-gcagagtcgtggagaaaagtgaagttcacaaaagaccttc 5697

>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO)
            gene, exons 1 and 2
          Length = 2205

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 85   gtcgtggacaaaagtgaagttcacagaagaccttcatacgacataggcca 134
            ||||||||||||||||||||||||| |||| ||||||| || ||||||||
Sbjct: 1576 gtcgtggacaaaagtgaagttcacaaaagatcttcatatgagataggcca 1527



 Score = 42.1 bits (21), Expect = 0.40
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                     
Query: 35   tacataaacagatcatagagaagaaaat-tatgctctagtcggaaagcagagtcgtg 90
            |||||| ||| |||||| |||| ||||  |||||||  |||||||||||||||||||
Sbjct: 1641 tacatacacaaatcatatagaacaaaaggtatgctccggtcggaaagcagagtcgtg 1585

>emb|CR382380.5| Zebrafish DNA sequence from clone DKEY-112M3 in linkage group 14,
             complete sequence
          Length = 84200

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    atcatagagaagaaaattat 65
             ||||||||||||||||||||
Sbjct: 30579 atcatagagaagaaaattat 30560

>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence
          Length = 181750

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     agagaagaaaattatgctctagtc 74
              |||||||||||||||| |||||||
Sbjct: 134558 agagaagaaaattatgttctagtc 134581

>emb|CR788230.7| Zebrafish DNA sequence from clone DKEY-57I11 in linkage group 2,
             complete sequence
          Length = 223248

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    gtcgtggacaaaagtgaag 103
             |||||||||||||||||||
Sbjct: 76320 gtcgtggacaaaagtgaag 76302

>emb|CR407582.7| Zebrafish DNA sequence from clone DKEY-224L8 in linkage group 7,
             complete sequence
          Length = 200693

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    gtcgtggacaaaagtgaag 103
             |||||||||||||||||||
Sbjct: 47604 gtcgtggacaaaagtgaag 47622

>emb|AL356125.13| Human DNA sequence from clone RP11-85G2 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 32328

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                        
Query: 39    taaacagatcatagaga-agaaaatta 64
             ||||||||||||||||| |||||||||
Sbjct: 22776 taaacagatcatagagacagaaaatta 22802

>emb|AL133384.12| Human DNA sequence from clone RP11-317F20 on chromosome 10 Contains the
             3' end of the ABLIM1 gene for actin binding LIM protein 1,
             a pseudogene similar to part of small nuclear
             ribonucleoprotein polypeptide B (SNRPB2), the 5' end of a
             novel gene (FLJ14564) (FLJ14564) and a CpG island,
             complete sequence
          Length = 136572

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 50    tagagaagaaaattatgctctag 72
             ||||| |||||||||||||||||
Sbjct: 45628 tagaggagaaaattatgctctag 45650

>emb|AL049736.10|HSDJ723E3 Human DNA sequence from clone RP4-723E3 on chromosome 20 Contains ESTs,
             STSs and GSSs, complete sequence
          Length = 73112

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    catagagaagaaaattatg 66
             |||||||||||||||||||
Sbjct: 70373 catagagaagaaaattatg 70391

>emb|BX914219.10| Zebrafish DNA sequence from clone DKEY-88A11 in linkage group 13,
             complete sequence
          Length = 126004

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    gtcgtggacaaaagtgaag 103
             |||||||||||||||||||
Sbjct: 75775 gtcgtggacaaaagtgaag 75757

>gb|AC127702.2| Homo sapiens BAC clone RP11-1386H14 from UL, complete sequence
          Length = 176969

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                        
Query: 39    taaacagatcatagaga-agaaaatta 64
             ||||||||||||||||| |||||||||
Sbjct: 91559 taaacagatcatagagacagaaaatta 91585

>emb|BX088705.18| Zebrafish DNA sequence from clone DKEY-21G19, complete sequence
          Length = 204103

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 85     gtcgtggacaaaagtgaag 103
              |||||||||||||||||||
Sbjct: 142690 gtcgtggacaaaagtgaag 142708

>gb|AC113173.2| Homo sapiens chromosome 1 clone RP4-724N10, complete sequence
          Length = 149950

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     tacataaacagatcataga 53
              |||||||||||||||||||
Sbjct: 126872 tacataaacagatcataga 126890

>gb|AC010057.7| Drosophila melanogaster 3L BAC RP98-26C18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 192588

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     agtcgtggacaaaagtgaa 102
              |||||||||||||||||||
Sbjct: 179430 agtcgtggacaaaagtgaa 179412

>ref|NM_167842.1| Drosophila melanogaster CG13900-RA, transcript variant A (CG13900),
           mRNA
          Length = 4249

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 84  agtcgtggacaaaagtgaa 102
           |||||||||||||||||||
Sbjct: 142 agtcgtggacaaaagtgaa 160

>gb|AC012236.12| Homo sapiens chromosome 15, clone RP11-16E12, complete sequence
          Length = 173729

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 2     acatatgcatatatgctccacaa 24
             |||||||||||||| ||||||||
Sbjct: 56449 acatatgcatatattctccacaa 56427

>gb|AC159995.4| Mus musculus chromosome 1, clone RP24-81G13, complete sequence
          Length = 204097

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     atcatagagaagaaaatta 64
              |||||||||||||||||||
Sbjct: 157345 atcatagagaagaaaatta 157327

>emb|BX323584.9| Zebrafish DNA sequence from clone DKEY-105I23 in linkage group 25,
             complete sequence
          Length = 140524

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    gtcgtggacaaaagtgaag 103
             |||||||||||||||||||
Sbjct: 10201 gtcgtggacaaaagtgaag 10183

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 6        atgcatatatgctccacaa 24
                |||||||||||||||||||
Sbjct: 29132374 atgcatatatgctccacaa 29132356

>gb|AC102163.14| Mus musculus chromosome 1, clone RP23-431N20, complete sequence
          Length = 218665

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 46    atcatagagaagaaaatta 64
             |||||||||||||||||||
Sbjct: 78675 atcatagagaagaaaatta 78657

>emb|BX284614.8| Zebrafish DNA sequence from clone CH211-140G18 in linkage group 25,
              complete sequence
          Length = 160828

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     gtcgtggacaaaagtgaag 103
              |||||||||||||||||||
Sbjct: 124404 gtcgtggacaaaagtgaag 124386

>emb|BX005131.14| Zebrafish DNA sequence from clone DKEY-195B5 in linkage group 2, complete
              sequence
          Length = 147345

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 85     gtcgtggacaaaagtgaag 103
              |||||||||||||||||||
Sbjct: 138436 gtcgtggacaaaagtgaag 138454

>emb|AL929386.11| Zebrafish DNA sequence from clone CH211-69J13, complete sequence
          Length = 165105

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    gtcgtggacaaaagtgaag 103
             |||||||||||||||||||
Sbjct: 11022 gtcgtggacaaaagtgaag 11040

>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0680A05
          Length = 168092

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     atgcatatatgctccacaa 24
             |||||||||||||||||||
Sbjct: 22342 atgcatatatgctccacaa 22324

>dbj|AK072661.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134M13, full
           insert sequence
          Length = 1212

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 6   atgcatatatgctccacaa 24
           |||||||||||||||||||
Sbjct: 443 atgcatatatgctccacaa 425

>gb|BT021424.1| Drosophila melanogaster LD01809 full insert cDNA
          Length = 4294

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 84  agtcgtggacaaaagtgaa 102
           |||||||||||||||||||
Sbjct: 184 agtcgtggacaaaagtgaa 202

>gb|BT021338.1| Drosophila melanogaster RE01065 full insert cDNA
          Length = 4235

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 84  agtcgtggacaaaagtgaa 102
           |||||||||||||||||||
Sbjct: 123 agtcgtggacaaaagtgaa 141

>emb|AL845306.9| Zebrafish DNA sequence from clone DKEY-217M5 in linkage group 20,
             complete sequence
          Length = 186675

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    gtcgtggacaaaagtgaag 103
             |||||||||||||||||||
Sbjct: 50155 gtcgtggacaaaagtgaag 50137

>gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete
              sequence
          Length = 286515

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     agtcgtggacaaaagtgaa 102
              |||||||||||||||||||
Sbjct: 205459 agtcgtggacaaaagtgaa 205441

>emb|AL953896.11| Zebrafish DNA sequence from clone CH211-119O8, complete sequence
          Length = 158018

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   acataaacagatcatagag 54
            |||||||||||||||||||
Sbjct: 9924 acataaacagatcatagag 9942


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,288,206
Number of Sequences: 3902068
Number of extensions: 1288206
Number of successful extensions: 96252
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 96174
Number of HSP's gapped (non-prelim): 77
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)