| Clone Name | rbah59k23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z68903.1|SCCPN60 S.cereale cv. Petkus "Halo" encoding cpn60 Length = 1707 Score = 509 bits (257), Expect = e-141 Identities = 331/354 (93%), Gaps = 2/354 (0%) Strand = Plus / Minus Query: 110 caccatcaatctctcaaaacttggttcatgctaccaaaaattaaaccacatcctctggag 169 ||||||||||||||||||||||||| ||||||||||||| ||||||||| || || |||| Sbjct: 1579 caccatcaatctctcaaaacttggtccatgctaccaaaa-ttaaaccacgtcatccggag 1521 Query: 170 agactccaccgtgtcgctcatcagtatccgaagccggagttgtccatggggttgacgagg 229 | |||| || |||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1520 aaactcggccatgtcactcatcagtatccgaagccggagttgtccatggggttggcgagg 1461 Query: 230 ggagcgggctcaggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttg 289 || |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1460 ggcgcggcctcaggctccttgatctcgacgaccaccacgtcggacgtcaggaaggtcttg 1401 Query: 290 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 349 |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1400 gccaccgatgcggcgtgctccaggcaacatctcaccaccttggtggggtcgatgatacca 1341 Query: 350 gcagccatcaagtcctcgtactgcccagtggcagcgttgtagccgaacttgaagttgtcg 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1340 gcagccatcaagtcctcgtactgcccagtggcagcgttgtagccgaacttgaagttgtcg 1281 Query: 410 ttagaaagaaccttntntggtaacaacactaccattgacaccancattcttggc 463 |||||||||||||| | |||||||||||| ||||||||||| |||||||||| Sbjct: 1280 ttagaaagaaccttctc-ggtaacaacactgccattgacaccggcattcttggc 1228 Score = 119 bits (60), Expect = 8e-24 Identities = 80/84 (95%), Gaps = 2/84 (2%) Strand = Plus / Minus Query: 1 ctgttccaattacatcaagnaaatttccgctaaatgtttctctgcttatttcgccattct 60 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 1688 ctgttccaattacatcaag-aaatttccgctaaatgtttctctgcttatttcgccgttct 1630 Query: 61 ggcaggcacatcatattgcatttt 84 ||| ||||||||| |||||||||| Sbjct: 1629 ggc-ggcacatcacattgcatttt 1607
>ref|NM_185419.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2131 Score = 280 bits (141), Expect = 4e-72 Identities = 241/274 (87%), Gaps = 1/274 (0%) Strand = Plus / Minus Query: 187 tcatcagtatccgaagccggagttgtccatggggttgacgaggggagcgggctcaggctc 246 ||||||||| ||| |||||||||||||||| |||||| || ||| || ||||||||||| Sbjct: 1898 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1839 Query: 247 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 306 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1838 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1779 Query: 307 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 366 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1778 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1719 Query: 367 gtactgcccagtggcagcgttgtagccgaacttgaagttgtcgttagaaagaaccttntn 426 |||||| ||||| ||||| ||||| || ||||||||||| |||||||| |||||||| | Sbjct: 1718 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1659 Query: 427 tggtaacaacactaccattgacaccancattctt 460 ||||||||| || ||||| |||||| ||||||| Sbjct: 1658 -ggtaacaacgcttccattaacaccagcattctt 1626
>dbj|AK101334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034I03, full insert sequence Length = 2131 Score = 280 bits (141), Expect = 4e-72 Identities = 241/274 (87%), Gaps = 1/274 (0%) Strand = Plus / Minus Query: 187 tcatcagtatccgaagccggagttgtccatggggttgacgaggggagcgggctcaggctc 246 ||||||||| ||| |||||||||||||||| |||||| || ||| || ||||||||||| Sbjct: 1898 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1839 Query: 247 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 306 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1838 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1779 Query: 307 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 366 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1778 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1719 Query: 367 gtactgcccagtggcagcgttgtagccgaacttgaagttgtcgttagaaagaaccttntn 426 |||||| ||||| ||||| ||||| || ||||||||||| |||||||| |||||||| | Sbjct: 1718 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1659 Query: 427 tggtaacaacactaccattgacaccancattctt 460 ||||||||| || ||||| |||||| ||||||| Sbjct: 1658 -ggtaacaacgcttccattaacaccagcattctt 1626
>dbj|AK062098.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A02, full insert sequence Length = 1781 Score = 280 bits (141), Expect = 4e-72 Identities = 241/274 (87%), Gaps = 1/274 (0%) Strand = Plus / Minus Query: 187 tcatcagtatccgaagccggagttgtccatggggttgacgaggggagcgggctcaggctc 246 ||||||||| ||| |||||||||||||||| |||||| || ||| || ||||||||||| Sbjct: 1566 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 1507 Query: 247 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 306 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1506 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 1447 Query: 307 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 366 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 1446 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 1387 Query: 367 gtactgcccagtggcagcgttgtagccgaacttgaagttgtcgttagaaagaaccttntn 426 |||||| ||||| ||||| ||||| || ||||||||||| |||||||| |||||||| | Sbjct: 1386 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 1327 Query: 427 tggtaacaacactaccattgacaccancattctt 460 ||||||||| || ||||| |||||| ||||||| Sbjct: 1326 -ggtaacaacgcttccattaacaccagcattctt 1294
>dbj|AK060117.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E09, full insert sequence Length = 1097 Score = 280 bits (141), Expect = 4e-72 Identities = 241/274 (87%), Gaps = 1/274 (0%) Strand = Plus / Minus Query: 187 tcatcagtatccgaagccggagttgtccatggggttgacgaggggagcgggctcaggctc 246 ||||||||| ||| |||||||||||||||| |||||| || ||| || ||||||||||| Sbjct: 892 tcatcagtacccgtagccggagttgtccatcgggttggtgacgggcgcaggctcaggctc 833 Query: 247 cttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatg 306 ||||||||||||||| || || ||||| || ||||| ||||||||||||||||| ||||| Sbjct: 832 cttgatctcgacgacgacgacatccgatgtgaggaatgtcttggccaccgacgcagcatg 773 Query: 307 ctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctc 366 ||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 772 ctcaagacaacatctcaccaccttagtggggtcaatgataccagcagccatcaaatcctc 713 Query: 367 gtactgcccagtggcagcgttgtagccgaacttgaagttgtcgttagaaagaaccttntn 426 |||||| ||||| ||||| ||||| || ||||||||||| |||||||| |||||||| | Sbjct: 712 gtactgtccagttgcagcattgtaaccaaacttgaagttatcgttagagagaaccttctc 653 Query: 427 tggtaacaacactaccattgacaccancattctt 460 ||||||||| || ||||| |||||| ||||||| Sbjct: 652 -ggtaacaacgcttccattaacaccagcattctt 620
>gb|AY675582.1| Zea mays RuBisCo subunit binding-protein beta subunit mRNA, partial cds Length = 1471 Score = 214 bits (108), Expect = 2e-52 Identities = 227/266 (85%), Gaps = 1/266 (0%) Strand = Plus / Minus Query: 186 ctcatcagtatccgaagccggagttgtccatggggttgacgaggggagcgggctcaggct 245 ||||||||||||| |||| ||||||||||| ||||| ||| || | | ||| |||| Sbjct: 1235 ctcatcagtatccatagccagagttgtccatcgggtttgcgacaggtgtagcctccggct 1176 Query: 246 ccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcat 305 ||||||| ||||||||||| || || || ||||||||||||||||||||||||||||| | Sbjct: 1175 ccttgatatcgacgaccacaacatctgatgtcaggaaggtcttggccaccgacgcggcgt 1116 Query: 306 gctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcct 365 |||||| ||| |||||||||||||| |||||||| ||||||||||||||||||| ||||| Sbjct: 1115 gctccaagcagcatctcaccaccttggtggggtcaatgataccagcagccatcaggtcct 1056 Query: 366 cgtactgcccagtggcagcgttgtagccgaacttgaagttgtcgttagaaagaaccttnt 425 ||||||| ||||| ||||| ||||| || |||||||||| || |||||||| ||||| | Sbjct: 1055 cgtactgtccagtagcagcattgtaaccatacttgaagttatcattagaaaggaccttct 996 Query: 426 ntggtaacaacactaccattgacacc 451 || |||||||| ||||||||||| Sbjct: 995 c-agtgacaacactgccattgacacc 971
>gb|AY103778.1| Zea mays PCO063180 mRNA sequence Length = 2338 Score = 214 bits (108), Expect = 2e-52 Identities = 201/232 (86%) Strand = Plus / Minus Query: 192 agtatccgaagccggagttgtccatggggttgacgaggggagcgggctcaggctccttga 251 ||||||| |||| ||||||||||| ||||| | ||||| || | ||| |||||||| | Sbjct: 2034 agtatccatagccagagttgtccatcgggttagcaaggggcgcagactctggctccttaa 1975 Query: 252 tctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctcca 311 | ||||||||||| || || || ||||||||||||||||||||||||||||||||||||| Sbjct: 1974 tatcgacgaccacaacatcagatgtcaggaaggtcttggccaccgacgcggcatgctcca 1915 Query: 312 ggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctcgtact 371 || ||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct: 1914 aacagcatctcaccaccttagtaggatcaatgataccagcagccatcaagtcctcgtact 1855 Query: 372 gcccagtggcagcgttgtagccgaacttgaagttgtcgttagaaagaacctt 423 | ||||| ||||| ||||| || |||||||||| ||||||||||| ||||| Sbjct: 1854 gtccagtagcagcattgtaaccatacttgaagttatcgttagaaaggacctt 1803
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 133 bits (67), Expect = 6e-28 Identities = 112/127 (88%) Strand = Plus / Plus Query: 203 ccggagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgacc 262 |||||||||||||| |||||| || ||| || |||||||||||||||||||||||||| Sbjct: 810397 ccggagttgtccatcgggttggtgacgggcgcaggctcaggctccttgatctcgacgacg 810456 Query: 263 accacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctc 322 || || ||||| || ||||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 810457 acgacatccgatgtgaggaatgtcttggccaccgacgcagcatgctcaagacaacatctc 810516 Query: 323 accacct 329 ||||||| Sbjct: 810517 accacct 810523 Score = 121 bits (61), Expect = 2e-24 Identities = 88/97 (90%) Strand = Plus / Plus Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcg 385 |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct: 810972 accttagtggggtcaatgataccagcagccatcaaatcctcgtactgtccagttgcagca 811031 Query: 386 ttgtagccgaacttgaagttgtcgttagaaagaacct 422 ||||| || ||||||||||| |||||||| ||||||| Sbjct: 811032 ttgtaaccaaacttgaagttatcgttagagagaacct 811068 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 328 cttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagc 384 |||||||||||| || | |||||| |||| ||||||||||||| ||||| ||||| Sbjct: 806511 cttagtggggtcaatagtcccagcaaccattaagtcctcgtacttgccagtagcagc 806567
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 133 bits (67), Expect = 6e-28 Identities = 112/127 (88%) Strand = Plus / Plus Query: 203 ccggagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgacc 262 |||||||||||||| |||||| || ||| || |||||||||||||||||||||||||| Sbjct: 93531 ccggagttgtccatcgggttggtgacgggcgcaggctcaggctccttgatctcgacgacg 93590 Query: 263 accacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctc 322 || || ||||| || ||||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 93591 acgacatccgatgtgaggaatgtcttggccaccgacgcagcatgctcaagacaacatctc 93650 Query: 323 accacct 329 ||||||| Sbjct: 93651 accacct 93657 Score = 121 bits (61), Expect = 2e-24 Identities = 88/97 (90%) Strand = Plus / Plus Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcg 385 |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| Sbjct: 94106 accttagtggggtcaatgataccagcagccatcaaatcctcgtactgtccagttgcagca 94165 Query: 386 ttgtagccgaacttgaagttgtcgttagaaagaacct 422 ||||| || ||||||||||| |||||||| ||||||| Sbjct: 94166 ttgtaaccaaacttgaagttatcgttagagagaacct 94202 Score = 42.1 bits (21), Expect = 1.6 Identities = 48/57 (84%) Strand = Plus / Plus Query: 328 cttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagc 384 |||||||||||| || | |||||| |||| ||||||||||||| ||||| ||||| Sbjct: 89645 cttagtggggtcaatagtcccagcaaccattaagtcctcgtacttgccagtagcagc 89701
>ref|NM_179480.1| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding AT1G55490 (CPN60B) transcript variant AT1G55490.2 mRNA, complete cds Length = 2060 Score = 113 bits (57), Expect = 5e-22 Identities = 208/258 (80%), Gaps = 1/258 (0%) Strand = Plus / Minus Query: 206 gagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgaccacc 265 ||||||||||| |||||| ||| |||| | || ||||| ||||||||||| || || || Sbjct: 1890 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1831 Query: 266 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 325 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1830 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1771 Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcg 385 ||||| || || |||||||| || ||||||||||| |||||||||| || || ||||| Sbjct: 1770 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1711 Query: 386 ttgtagccgaacttgaagttgtcgttagaaagaaccttntntggtaacaacactaccatt 445 ||||| ||||| || | ||| ||||| ||||| ||||| | | |||| ||||| ||||| Sbjct: 1710 ttgtaaccgaatttcacgttatcgttggaaagcaccttctc-gctaactacacttccatt 1652 Query: 446 gacaccancattcttggc 463 |||||| |||||||||| Sbjct: 1651 aacaccagcattcttggc 1634
>ref|NM_104424.2| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding AT1G55490 (CPN60B) transcript variant AT1G55490.1 mRNA, complete cds Length = 2087 Score = 113 bits (57), Expect = 5e-22 Identities = 208/258 (80%), Gaps = 1/258 (0%) Strand = Plus / Minus Query: 206 gagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgaccacc 265 ||||||||||| |||||| ||| |||| | || ||||| ||||||||||| || || || Sbjct: 1917 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1858 Query: 266 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 325 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1857 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1798 Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcg 385 ||||| || || |||||||| || ||||||||||| |||||||||| || || ||||| Sbjct: 1797 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1738 Query: 386 ttgtagccgaacttgaagttgtcgttagaaagaaccttntntggtaacaacactaccatt 445 ||||| ||||| || | ||| ||||| ||||| ||||| | | |||| ||||| ||||| Sbjct: 1737 ttgtaaccgaatttcacgttatcgttggaaagcaccttctc-gctaactacacttccatt 1679 Query: 446 gacaccancattcttggc 463 |||||| |||||||||| Sbjct: 1678 aacaccagcattcttggc 1661
>gb|AY081501.1| Arabidopsis thaliana Rubisco subunit binding-protein beta subunit (At1g55490) mRNA, complete cds Length = 1844 Score = 113 bits (57), Expect = 5e-22 Identities = 208/258 (80%), Gaps = 1/258 (0%) Strand = Plus / Minus Query: 206 gagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgaccacc 265 ||||||||||| |||||| ||| |||| | || ||||| ||||||||||| || || || Sbjct: 1787 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1728 Query: 266 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 325 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1727 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1668 Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcg 385 ||||| || || |||||||| || ||||||||||| |||||||||| || || ||||| Sbjct: 1667 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1608 Query: 386 ttgtagccgaacttgaagttgtcgttagaaagaaccttntntggtaacaacactaccatt 445 ||||| ||||| || | ||| ||||| ||||| ||||| | | |||| ||||| ||||| Sbjct: 1607 ttgtaaccgaatttcacgttatcgttggaaagcaccttctc-gctaactacacttccatt 1549 Query: 446 gacaccancattcttggc 463 |||||| |||||||||| Sbjct: 1548 aacaccagcattcttggc 1531
>gb|AF386945.1|AF386945 Arabidopsis thaliana Rubisco subunit binding-protein beta subunit (T5A14.11) mRNA, complete cds Length = 2060 Score = 113 bits (57), Expect = 5e-22 Identities = 208/258 (80%), Gaps = 1/258 (0%) Strand = Plus / Minus Query: 206 gagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgaccacc 265 ||||||||||| |||||| ||| |||| | || ||||| ||||||||||| || || || Sbjct: 1909 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1850 Query: 266 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 325 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1849 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1790 Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcg 385 ||||| || || |||||||| || ||||||||||| |||||||||| || || ||||| Sbjct: 1789 acctttgttggatcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagca 1730 Query: 386 ttgtagccgaacttgaagttgtcgttagaaagaaccttntntggtaacaacactaccatt 445 ||||| ||||| || | ||| ||||| ||||| ||||| | | |||| ||||| ||||| Sbjct: 1729 ttgtaaccgaatttcacgttatcgttggaaagcaccttctc-gctaactacacttccatt 1671 Query: 446 gacaccancattcttggc 463 |||||| |||||||||| Sbjct: 1670 aacaccagcattcttggc 1653
>emb|BX814891.1|CNS0ADZ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2000 Score = 105 bits (53), Expect = 1e-19 Identities = 208/258 (80%), Gaps = 2/258 (0%) Strand = Plus / Minus Query: 206 gagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgaccacc 265 ||||||||||| |||||| ||| |||| | || ||||| ||||||||||| || || || Sbjct: 1871 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 1812 Query: 266 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 325 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 1811 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 1752 Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcg 385 ||||| || || |||||||| || ||||||||||| |||||||||| || || ||||| Sbjct: 1751 acctttgttggatcgatgattcctgcagccatcaa-tcctcgtacttgccggttgcagca 1693 Query: 386 ttgtagccgaacttgaagttgtcgttagaaagaaccttntntggtaacaacactaccatt 445 ||||| ||||| || | ||| ||||| ||||| ||||| | | |||| ||||| ||||| Sbjct: 1692 ttgtaaccgaatttcacgttatcgttggaaagcaccttctc-gctaactacacttccatt 1634 Query: 446 gacaccancattcttggc 463 |||||| |||||||||| Sbjct: 1633 aacaccagcattcttggc 1616
>gb|M35600.1|BNA60CPNB B.napus plastid 60-kDa chaperonin-60 beta-polypeptide (cpn-60 beta) mRNA, partial cds Length = 1982 Score = 103 bits (52), Expect = 5e-19 Identities = 154/188 (81%) Strand = Plus / Minus Query: 236 ggctcaggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccacc 295 |||||||||||||||||||| || ||||| ||| ||| ||| ||| ||||| || ||| Sbjct: 1820 ggctcaggctccttgatctcaacaaccacacagtcagacatcaagaatgtctttgcaacc 1761 Query: 296 gacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagcc 355 || || ||||| |||| |||||||||||| |||||||| || |||||||| || |||||| Sbjct: 1760 gaagctgcatgttccaagcaacatctcacaaccttagttggatcgatgattcctgcagcc 1701 Query: 356 atcaagtcctcgtactgcccagtggcagcgttgtagccgaacttgaagttgtcgttagaa 415 || | |||||||||| || || ||||| ||||| |||||||| | || ||||||||| Sbjct: 1700 attagatcctcgtacttgccggttgcagcattgtaaccgaacttcacattatcgttagaa 1641 Query: 416 agaacctt 423 || ||||| Sbjct: 1640 agcacctt 1633
>ref|XM_463795.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2155 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 290 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 349 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1789 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1730 Query: 350 gcagccatcaagtcctc 366 ||||||||||| ||||| Sbjct: 1729 gcagccatcaaatcctc 1713
>ref|XM_506674.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1435_F07.26 mRNA Length = 2310 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 290 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 349 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1809 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1750 Query: 350 gcagccatcaagtcctc 366 ||||||||||| ||||| Sbjct: 1749 gcagccatcaaatcctc 1733
>dbj|AK101537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048E22, full insert sequence Length = 2154 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 290 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 349 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1788 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1729 Query: 350 gcagccatcaagtcctc 366 ||||||||||| ||||| Sbjct: 1728 gcagccatcaaatcctc 1712
>dbj|AK070603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059D06, full insert sequence Length = 2310 Score = 97.6 bits (49), Expect = 3e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 290 gccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtcgatgatacca 349 ||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1809 gccaccgacgcagcatgctccaagcaacatctcaccaccttggtgggatcaataatacca 1750 Query: 350 gcagccatcaagtcctc 366 ||||||||||| ||||| Sbjct: 1749 gcagccatcaaatcctc 1733
>gb|BT018779.1| Zea mays clone EL01N0526C09.d mRNA sequence Length = 2155 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 280 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 339 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 1792 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 1733 Query: 340 gatgataccagcagccatcaagtcctcgtact 371 |||||||||||||||||||||||||| |||| Sbjct: 1732 aatgataccagcagccatcaagtcctcatact 1701
>gb|BT018139.1| Zea mays clone EL01N0554H01.c mRNA sequence Length = 975 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 280 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 339 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 587 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 528 Query: 340 gatgataccagcagccatcaagtcctcgtact 371 |||||||||||||||||||||||||| |||| Sbjct: 527 aatgataccagcagccatcaagtcctcatact 496
>gb|AY104969.1| Zea mays PCO070942 mRNA sequence Length = 2290 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 280 gaaggtcttggccaccgacgcggcatgctccaggcaacatctcaccaccttagtggggtc 339 |||||| || |||||||| || |||||||||| ||| || ||||| ||||| ||||| || Sbjct: 1920 gaaggttttcgccaccgatgcagcatgctccaagcagcacctcacaaccttggtgggatc 1861 Query: 340 gatgataccagcagccatcaagtcctcgtact 371 |||||||||||||||||||||||||| |||| Sbjct: 1860 aatgataccagcagccatcaagtcctcatact 1829
>gb|DQ226886.1| Boechera divaricarpa isolate SLW-C-H11 mRNA sequence Length = 331 Score = 69.9 bits (35), Expect = 7e-09 Identities = 131/163 (80%) Strand = Plus / Minus Query: 206 gagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgaccacc 265 ||||||||||| |||||| ||| ||| || || ||||| ||||||||||| || || || Sbjct: 163 gagttgtccattgggttgccgacgggggctggttcaggttccttgatctcaacaacaaca 104 Query: 266 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 325 ||||||| ||| ||| ||||| || || || || || || |||| |||||||||||| Sbjct: 103 cagtccgacatcaagaacgtctttgcaactgaagctgcgtgttccaagcaacatctcaca 44 Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctcgt 368 ||||| || || |||||||| || |||||||| || ||||||| Sbjct: 43 acctttgttggatcgatgattcctgcagccattaaatcctcgt 1
>gb|L27473.1|CRECPN1C Chlamydomonas reinhardtii chaperonin beta-like subunit, partial cds Length = 1618 Score = 67.9 bits (34), Expect = 3e-08 Identities = 97/118 (82%) Strand = Plus / Minus Query: 250 gatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctc 309 ||||||| |||||||||||| | | |||||||||||||||||||||| |||| | ||| Sbjct: 729 gatctcggtgaccaccacgtcagccagcaggaaggtcttggccaccgacacggcgttctc 670 Query: 310 caggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaagtcctcg 367 ||| | || | |||||||| |||||||||||||| || || |||||| ||||||| Sbjct: 669 cagcgagcagcggaccaccttggtggggtcgatgatgccggcctccatcaggtcctcg 612
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 290 gccaccgacgcggcatgctccaggcaacatctcaccacct 329 ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 163146 gccaccgacgcagcatgctccaagcaacatctcaccacct 163107 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctc 366 ||||| ||||| || || ||||||||||||||||| ||||| Sbjct: 162831 accttggtgggatcaataataccagcagccatcaaatcctc 162791
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 290 gccaccgacgcggcatgctccaggcaacatctcaccacct 329 ||||||||||| |||||||||| ||||||||||||||||| Sbjct: 112173 gccaccgacgcagcatgctccaagcaacatctcaccacct 112134 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 326 accttagtggggtcgatgataccagcagccatcaagtcctc 366 ||||| ||||| || || ||||||||||||||||| ||||| Sbjct: 111858 accttggtgggatcaataataccagcagccatcaaatcctc 111818
>gb|L27471.1|CRECPN1A Chlamydomonas reinhardtii chaperonin beta-like subunit, complete cds Length = 1970 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 259 gaccaccacgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaaca 318 |||||||||||||| | |||||||||||||||||||||| |||| | ||||| | | || Sbjct: 1227 gaccaccacgtccgccagcaggaaggtcttggccaccgacacggcgttctccatggagca 1168 Query: 319 tctcaccaccttagtggggtcgatgat 345 | |||||||| | |||||||||||| Sbjct: 1167 gcggaccaccttggaggggtcgatgat 1141
>ref|NM_112193.1| Arabidopsis thaliana ATP binding / protein binding AT3G13470 mRNA, complete cds Length = 1922 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 299 gcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatc 358 |||||||| || | |||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct: 1682 gcggcatgttctaagcaacatctcacaacctttgtcgggtcgatgatgcctgcagccatc 1623 Query: 359 a 359 | Sbjct: 1622 a 1622
>dbj|AK118623.2| Arabidopsis thaliana At3g13470 mRNA for putative chaperonin 60 beta, complete cds, clone: RAFL19-88-M03 Length = 471 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 299 gcggcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatc 358 |||||||| || | |||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct: 185 gcggcatgttctaagcaacatctcacaacctttgtcgggtcgatgatgcctgcagccatc 126 Query: 359 a 359 | Sbjct: 125 a 125
>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence Length = 87967 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Minus Query: 206 gagttgtccatggggttgacgaggggagcgggctcaggctccttgatctcgacgaccacc 265 ||||||||||| |||||| ||| |||| | || ||||| ||||||||||| || || || Sbjct: 55104 gagttgtccattgggttgccgacgggaactggttcaggttccttgatctcaacaacaacg 55045 Query: 266 acgtccgacgtcaggaaggtcttggccaccgacgcggcatgctccaggcaacatctcacc 325 ||||||| ||| ||| ||||| || ||||| || || || |||| |||||||||||| Sbjct: 55044 cagtccgacatcaagaaagtctttgcaaccgaagctgcgtgttccaagcaacatctcaca 54985 Query: 326 acct 329 |||| Sbjct: 54984 acct 54981 Score = 50.1 bits (25), Expect = 0.006 Identities = 70/85 (82%) Strand = Plus / Minus Query: 338 tcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcgttgtagccgaac 397 |||||||| || ||||||||||| |||||||||| || || ||||| ||||| ||||| Sbjct: 54880 tcgatgattcctgcagccatcaaatcctcgtacttgccggttgcagcattgtaaccgaat 54821 Query: 398 ttgaagttgtcgttagaaagaacct 422 || | ||| ||||| ||||| |||| Sbjct: 54820 ttcacgttatcgttggaaagcacct 54796
>dbj|AB158542.1| Ipomoea nil cpn60 beta mRNA for 60 kDa chaperonin beta subunit-like protein, partial cds Length = 437 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 314 caacatctcaccaccttagtggggtcgatgataccagcagccatcaagtc 363 ||||||||||||||||| || || || || || ||||||||||||||||| Sbjct: 50 caacatctcaccaccttggttggatcaataattccagcagccatcaagtc 1
>gb|BT013332.1| Lycopersicon esculentum clone 135060F, mRNA sequence Length = 2189 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Minus Query: 302 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 357 |||||||||| ||||||||| ||||| || || || || || |||||||||||||| Sbjct: 1754 gcatgctccaagcaacatcttaccacttttgtaggatcaattataccagcagccat 1699
>gb|U21139.1|PSU21139 Pisum sativum chaperonin precursor mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 2162 Score = 48.1 bits (24), Expect = 0.026 Identities = 48/56 (85%) Strand = Plus / Minus Query: 302 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 357 ||||| |||||||||||||| |||||||| || || || ||||| || |||||||| Sbjct: 1794 gcatgttccaggcaacatctgaccacctttgttggatcaatgatccctgcagccat 1739 Score = 44.1 bits (22), Expect = 0.40 Identities = 27/29 (93%) Strand = Plus / Minus Query: 432 acaacactaccattgacaccancattctt 460 |||||||||||||| |||||| ||||||| Sbjct: 1665 acaacactaccattaacaccagcattctt 1637
>gb|AY811022.1| Schistosoma japonicum SJCHGC03737 protein mRNA, partial cds Length = 568 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 96 aactacatcatcatcaccatca 117 |||||||||||||||||||||| Sbjct: 282 aactacatcatcatcaccatca 303
>gb|AF233387.1| Rhodococcus equi GroEL (groEL) gene, complete cds; and unknown genes Length = 4713 Score = 44.1 bits (22), Expect = 0.40 Identities = 46/54 (85%) Strand = Plus / Minus Query: 335 gggtcgatgataccagcagccatcaagtcctcgtactgcccagtggcagcgttg 388 |||||| |||| |||||||||| || ||||||||||| || ||||| |||||| Sbjct: 4311 gggtcgttgatgccagcagccagcaggtcctcgtactcaccggtggcggcgttg 4258
>ref|XM_975351.1| PREDICTED: Mus musculus similar to odd Oz/ten-m homolog 2 (LOC669490), mRNA Length = 7697 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 ggagttgtccatggggttgacg 226 |||||||||||||||||||||| Sbjct: 2277 ggagttgtccatggggttgacg 2256
>emb|Z69885.1|CET04C10 Caenorhabditis elegans Cosmid T04C10, complete sequence Length = 20958 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 101 catcatcatcaccatcaatctc 122 |||||||||||||||||||||| Sbjct: 1554 catcatcatcaccatcaatctc 1533
>gb|AC124385.3| Mus musculus BAC clone RP24-421A2 from chromosome 1, complete sequence Length = 163778 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 actacatcatcatcaccatcaa 118 |||||||||||||||||||||| Sbjct: 8500 actacatcatcatcaccatcaa 8521
>gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome 1, complete sequence Length = 158354 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 actacatcatcatcaccatcaa 118 |||||||||||||||||||||| Sbjct: 102961 actacatcatcatcaccatcaa 102982
>ref|XM_546253.2| PREDICTED: Canis familiaris similar to odd Oz/ten-m homolog 2 (LOC489135), mRNA Length = 8210 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 ggagttgtccatggggttgacg 226 |||||||||||||||||||||| Sbjct: 3873 ggagttgtccatggggttgacg 3852
>emb|AL645912.18| Mouse DNA sequence from clone RP23-134G19 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to human KIBRA, a pseudogene similar to part of actin, the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila) and two CpG islands, complete sequence Length = 186736 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 205 ggagttgtccatggggttgacg 226 |||||||||||||||||||||| Sbjct: 113689 ggagttgtccatggggttgacg 113710
>emb|AL606512.8| Mouse DNA sequence from clone RP23-155D19 on chromosome 11, complete sequence Length = 157494 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 31 taaatgtttctctgcttatttc 52 |||||||||||||||||||||| Sbjct: 138017 taaatgtttctctgcttatttc 138038
>ref|NM_078055.2| Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-5) (atf-5) mRNA, complete cds Length = 1044 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 101 catcatcatcaccatcaatctc 122 |||||||||||||||||||||| Sbjct: 320 catcatcatcaccatcaatctc 341
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 326 accttagtggggtcgatgataccagc 351 |||||||| ||||||||||||||||| Sbjct: 381194 accttagttgggtcgatgataccagc 381169
>ref|NM_011856.2| Mus musculus odd Oz/ten-m homolog 2 (Drosophila) (Odz2), mRNA Length = 8797 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 ggagttgtccatggggttgacg 226 |||||||||||||||||||||| Sbjct: 4366 ggagttgtccatggggttgacg 4345
>gb|U46136.1|STU46136 Solanum tuberosum chaperonin-60 beta subunit mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2078 Score = 44.1 bits (22), Expect = 0.40 Identities = 97/122 (79%) Strand = Plus / Minus Query: 242 ggctccttgatctcgacgaccaccacgtccgacgtcaggaaggtcttggccaccgacgcg 301 |||||||||||||| || ||||| || ||| ||| ||| ||||| ||||| || || Sbjct: 1785 ggctccttgatctcaaccaccacgcaatctgacatcaagaatgtcttagccacagatgca 1726 Query: 302 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccatcaag 361 || || || || ||||| ||||||||||| || || || ||||| ||||||||||| ||| Sbjct: 1725 gcgtgttctagacaacacctcaccacctttgttggatcaatgatgccagcagccattaag 1666 Query: 362 tc 363 || Sbjct: 1665 tc 1664
>emb|AL671998.10| Mouse DNA sequence from clone RP23-71G11 on chromosome X, complete sequence Length = 220669 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 94 aaaactacatcatcatcaccatcaat 119 |||| ||||||||||||||||||||| Sbjct: 165706 aaaaatacatcatcatcaccatcaat 165731
>dbj|AB025411.1| Mus musculus mRNA for Ten-m2, complete cds Length = 8797 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 ggagttgtccatggggttgacg 226 |||||||||||||||||||||| Sbjct: 4366 ggagttgtccatggggttgacg 4345
>ref|NM_128753.2| Arabidopsis thaliana unknown protein AT2G31945 mRNA, complete cds Length = 546 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 aactacatcatcatcaccatc 116 ||||||||||||||||||||| Sbjct: 374 aactacatcatcatcaccatc 394
>ref|XM_614930.2| PREDICTED: Bos taurus similar to odd Oz/ten-m homolog 2 (LOC541183), mRNA Length = 4770 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 ggagttgtccatggggttgac 225 ||||||||||||||||||||| Sbjct: 1563 ggagttgtccatggggttgac 1543
>emb|AL591901.12| Human DNA sequence from clone RP11-400C4 on chromosome 1, complete sequence Length = 129844 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 actacatcatcatcaccatca 117 ||||||||||||||||||||| Sbjct: 33931 actacatcatcatcaccatca 33911
>emb|AL592423.8| Human DNA sequence from clone RP11-1A24 on chromosome 6 Contains part of the GRM1 gene for metabotropic glutamate receptor 1 and a novel pseudogene, complete sequence Length = 53728 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 tgcatttttcttatctcaaaa 97 ||||||||||||||||||||| Sbjct: 4551 tgcatttttcttatctcaaaa 4531
>gb|AY097404.1| Arabidopsis thaliana At2g31940/F20M17.2 mRNA, complete cds Length = 288 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 aactacatcatcatcaccatc 116 ||||||||||||||||||||| Sbjct: 264 aactacatcatcatcaccatc 284
>gb|AC006533.8| Arabidopsis thaliana chromosome 2 clone F20M17 map nga361, complete sequence Length = 100665 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 aactacatcatcatcaccatc 116 ||||||||||||||||||||| Sbjct: 4484 aactacatcatcatcaccatc 4464
>gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, complete sequence Length = 192063 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 actacatcatcatcaccatcaatct 121 ||||||||||||||| ||||||||| Sbjct: 58078 actacatcatcatcatcatcaatct 58102
>gb|AY075662.1| Arabidopsis thaliana At2g31940/F20M17.2 mRNA, complete cds Length = 546 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 aactacatcatcatcaccatc 116 ||||||||||||||||||||| Sbjct: 374 aactacatcatcatcaccatc 394
>gb|AC009774.18|AC009774 Homo sapiens 12 BAC RP11-524K8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153081 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 actacatcatcatcaccatca 117 ||||||||||||||||||||| Sbjct: 35629 actacatcatcatcaccatca 35649
>gb|AY086578.1| Arabidopsis thaliana clone 258917 mRNA, complete sequence Length = 525 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 aactacatcatcatcaccatc 116 ||||||||||||||||||||| Sbjct: 369 aactacatcatcatcaccatc 389
>dbj|AB019234.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKN22 Length = 27229 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 302 gcatgctccaggcaacatctcaccacctt 330 |||||||| |||||||||||||| ||||| Sbjct: 2197 gcatgctctaggcaacatctcacaacctt 2169
>emb|AL845524.5| Mouse DNA sequence from clone RP23-248D22 on chromosome 2, complete sequence Length = 174188 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 actacatcatcatcaccatca 117 ||||||||||||||||||||| Sbjct: 11062 actacatcatcatcaccatca 11042
>ref|NM_125033.3| Arabidopsis thaliana ATP binding / protein binding AT5G56500 transcript variant AT5G56500.1 mRNA, complete cds Length = 2315 Score = 40.1 bits (20), Expect = 6.2 Identities = 47/56 (83%) Strand = Plus / Minus Query: 302 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 357 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1770 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1715
>ref|NM_001037006.1| Arabidopsis thaliana ATP binding / protein binding AT5G56500 transcript variant AT5G56500.2 mRNA, complete cds Length = 2355 Score = 40.1 bits (20), Expect = 6.2 Identities = 47/56 (83%) Strand = Plus / Minus Query: 302 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 357 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1810 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1755
>ref|NM_130072.2| Arabidopsis thaliana cyclin-dependent protein kinase AT2G45080 mRNA, complete cds Length = 704 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acatcatcatcaccatcaat 119 |||||||||||||||||||| Sbjct: 653 acatcatcatcaccatcaat 672
>gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome 14, complete sequence Length = 216566 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 ccacatcctctggagagactccac 178 |||| ||||||||||||||||||| Sbjct: 70428 ccacttcctctggagagactccac 70405
>ref|XM_641134.1| Dictyostelium discoideum hypothetical protein (DDB0216691), partial mRNA Length = 3039 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acatcatcatcaccatcaat 119 |||||||||||||||||||| Sbjct: 556 acatcatcatcaccatcaat 575
>gb|AC169504.1| Mus musculus BAC clone RP23-416K3 from chromosome 17, complete sequence Length = 215554 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ctacatcatcatcaccatca 117 |||||||||||||||||||| Sbjct: 15711 ctacatcatcatcaccatca 15692
>gb|AC119889.13| Mus musculus chromosome 1, clone RP24-220M12, complete sequence Length = 153713 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 catcatcatcaccatcaatc 120 |||||||||||||||||||| Sbjct: 59298 catcatcatcaccatcaatc 59317
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tctcgacgaccaccacgtcc 271 |||||||||||||||||||| Sbjct: 36065 tctcgacgaccaccacgtcc 36084
>gb|AC117780.5| Mus musculus chromosome 16, clone RP24-540H15, complete sequence Length = 153703 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 caaaactacatcatcatcaccatc 116 |||||| ||||||||||||||||| Sbjct: 151235 caaaacaacatcatcatcaccatc 151212
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tctcgacgaccaccacgtcc 271 |||||||||||||||||||| Sbjct: 839910 tctcgacgaccaccacgtcc 839929
>gb|AC129219.3| Mus musculus BAC clone RP24-474C15 from chromosome 14, complete sequence Length = 195935 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 ccacatcctctggagagactccac 178 |||| ||||||||||||||||||| Sbjct: 148108 ccacttcctctggagagactccac 148085
>gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, complete sequence Length = 194593 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ctctcaaaacttggttcatg 139 |||||||||||||||||||| Sbjct: 46054 ctctcaaaacttggttcatg 46073
>gb|AC126257.4| Mus musculus BAC clone RP24-247A8 from chromosome 9, complete sequence Length = 174764 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 catcatcatcaccatcaatc 120 |||||||||||||||||||| Sbjct: 85920 catcatcatcaccatcaatc 85901
>gb|AC129595.3| Mus musculus BAC clone RP23-257H19 from chromosome 7, complete sequence Length = 214318 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 aacttggttcatgctaccaaaaat 150 |||||||||||||||| ||||||| Sbjct: 67422 aacttggttcatgctatcaaaaat 67399
>gb|AC131104.3| Mus musculus BAC clone RP23-245G19 from chromosome 12, complete sequence Length = 151046 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 catcatcatcaccatcaatc 120 |||||||||||||||||||| Sbjct: 51396 catcatcatcaccatcaatc 51415
>gb|AC122028.3| Mus musculus BAC clone RP24-394D4 from 2, complete sequence Length = 173301 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 aaaactacatcatcatcaccatca 117 |||||||||||||||||| ||||| Sbjct: 145629 aaaactacatcatcatcatcatca 145652
>gb|AY232267.1| Dictyostelium discoideum putative protein Roco5 (roco5) gene, complete cds Length = 8880 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 101 catcatcatcaccatcaatctctcaaaa 128 |||||||||||||||||| | ||||||| Sbjct: 5222 catcatcatcaccatcaaccactcaaaa 5249
>emb|BX908811.1| Neurospora crassa DNA linkage group VI Cosmid contig H4H7 Length = 108058 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 atcatcatcaccatcaatct 121 |||||||||||||||||||| Sbjct: 84049 atcatcatcaccatcaatct 84030
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tctcgacgaccaccacgtcc 271 |||||||||||||||||||| Sbjct: 682326 tctcgacgaccaccacgtcc 682345
>emb|AL451022.1|NC2E4 Neurospora crassa DNA linkage group V Cosmid contig 2E4 Length = 62070 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 catcatcatcaccatcaatc 120 |||||||||||||||||||| Sbjct: 53238 catcatcatcaccatcaatc 53219
>emb|AL808115.10| Mouse DNA sequence from clone RP23-224M8 on chromosome X, complete sequence Length = 163408 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 atcatcatcaccatcaatct 121 |||||||||||||||||||| Sbjct: 155608 atcatcatcaccatcaatct 155589
>gb|AC023644.6| Homo sapiens chromosome 8, clone RP11-257P3, complete sequence Length = 60057 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 catcatcatcaccatcaatc 120 |||||||||||||||||||| Sbjct: 59125 catcatcatcaccatcaatc 59144
>gb|AC163654.2| Mus musculus BAC clone RP23-259M14 from chromosome 16, complete sequence Length = 159273 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 catcatcatcaccatcaatc 120 |||||||||||||||||||| Sbjct: 71096 catcatcatcaccatcaatc 71077
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 caccaccttagtggggtcgatgat 345 ||||||||| |||||||||||||| Sbjct: 3516159 caccaccttggtggggtcgatgat 3516136
>gb|AC115621.3| Homo sapiens BAC clone RP11-315D13 from 4, complete sequence Length = 148726 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tttttcttatctcaaaacta 100 |||||||||||||||||||| Sbjct: 110055 tttttcttatctcaaaacta 110036
>gb|AY074650.1| Arabidopsis thaliana At2g45080/T14P1.11 mRNA, complete cds Length = 704 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acatcatcatcaccatcaat 119 |||||||||||||||||||| Sbjct: 653 acatcatcatcaccatcaat 672
>dbj|AK220921.1| Arabidopsis thaliana mRNA for RuBisCO subunit binding-protein beta subunit precursor, partial cds, clone: RAFL22-49-H21 Length = 766 Score = 40.1 bits (20), Expect = 6.2 Identities = 47/56 (83%) Strand = Plus / Minus Query: 302 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 357 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 408 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 353
>gb|AC018616.5|AC018616 Homo sapiens chromosome 8, clone RP11-157I4, complete sequence Length = 165948 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 catcatcatcaccatcaatc 120 |||||||||||||||||||| Sbjct: 1069 catcatcatcaccatcaatc 1088
>emb|BX832336.1|CNS09ZVE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH66ZD09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 916 Score = 40.1 bits (20), Expect = 6.2 Identities = 47/56 (83%) Strand = Plus / Minus Query: 302 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 357 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 631 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 576
>emb|BX831822.1|CNS09YNB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1462 Score = 40.1 bits (20), Expect = 6.2 Identities = 47/56 (83%) Strand = Plus / Minus Query: 302 gcatgctccaggcaacatctcaccaccttagtggggtcgatgataccagcagccat 357 |||||||| |||||||||||||| || || || || || ||||| || |||||||| Sbjct: 1164 gcatgctctaggcaacatctcacaactttggttggatcaatgattcctgcagccat 1109
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 ctccttgatctcgacgaccaccac 267 ||||||||||||| |||||||||| Sbjct: 73942 ctccttgatctcgccgaccaccac 73965
>gb|AC154383.2| Mus musculus BAC clone RP23-38N16 from chromosome 16, complete sequence Length = 205926 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 caaaactacatcatcatcaccatc 116 |||||| ||||||||||||||||| Sbjct: 30259 caaaacaacatcatcatcaccatc 30236
>gb|AF065610.1|AF065610 Toxoplasma gondii strain 76K heat shock protein 60 pseudogene, mRNA sequence Length = 2442 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 332 gtggggtcgatgataccagcagccatca 359 |||||||||||||| || |||||||||| Sbjct: 1633 gtggggtcgatgatgccggcagccatca 1606
>gb|AF065609.1|AF065609 Toxoplasma gondii strain 76K heat shock protein 60 mRNA, complete cds Length = 2430 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 332 gtggggtcgatgataccagcagccatca 359 |||||||||||||| || |||||||||| Sbjct: 1621 gtggggtcgatgatgccggcagccatca 1594
>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete sequence Length = 237233 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cgtcaggaaggtcttggcca 293 |||||||||||||||||||| Sbjct: 177375 cgtcaggaaggtcttggcca 177394
>gb|AC007659.2|AC007659 Arabidopsis thaliana chromosome II section 241 of 255 of the complete sequence. Sequence from clones T13E15, T14P1 Length = 87885 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 acatcatcatcaccatcaat 119 |||||||||||||||||||| Sbjct: 58032 acatcatcatcaccatcaat 58051
>emb|BX284649.14| Mouse DNA sequence from clone RP23-42M7 on chromosome 2, complete sequence Length = 127220 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 aaaactacatcatcatcaccatca 117 |||||||||||||||||| ||||| Sbjct: 114436 aaaactacatcatcatcatcatca 114413
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tctcgacgaccaccacgtcc 271 |||||||||||||||||||| Sbjct: 590826 tctcgacgaccaccacgtcc 590845
>emb|BX000537.11| Mouse DNA sequence from clone RP24-392J24 on chromosome X, complete sequence Length = 162188 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ttaaaccacatcctctggag 169 |||||||||||||||||||| Sbjct: 5328 ttaaaccacatcctctggag 5347
>emb|AL627302.20| Mouse DNA sequence from clone RP23-272D10 on chromosome X, complete sequence Length = 191439 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 atctcaaaactacatcatca 108 |||||||||||||||||||| Sbjct: 140042 atctcaaaactacatcatca 140061 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,130,887 Number of Sequences: 3902068 Number of extensions: 4130887 Number of successful extensions: 100395 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99992 Number of HSP's gapped (non-prelim): 390 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)