ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah59j01 |
|---|---|
| Clone Library Name | barley_pub |
>ISPG_PARUW (Q6MD85) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 654 Score = 42.7 bits (99), Expect = 3e-04 Identities = 18/41 (43%), Positives = 25/41 (60%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDPPT 42 P K LYVG V++ I A + L+ LI+ HGRW++P T Sbjct: 611 PGKIDLYVGKECVEKDIDFADADDRLVNLIRAHGRWIEPQT 651
>ISPG_PROMM (Q7V7G9) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 406 Score = 39.3 bits (90), Expect = 0.003 Identities = 20/40 (50%), Positives = 24/40 (60%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDPP 45 P LY G + R ++ +ALIQLIKD GRWVDPP Sbjct: 368 PGVISLYRGRDEI-RKVSESEGVDALIQLIKDDGRWVDPP 406
>ISPG_LEPIN (Q8F1H5) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 663 Score = 38.5 bits (88), Expect = 0.005 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDPPTE 39 P K LY G +V + + A E L+QLIKD+G W DP + Sbjct: 622 PGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNGLWQDPSND 663
>ISPG_CHLTE (Q8KG23) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 746 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = -2 Query: 158 KXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 + LYVG V+ I A E LI+LI+ +G+WVDP Sbjct: 709 RVSLYVGKECVEENIPEAEALERLIELIRQNGKWVDP 745
>ISPG_CHLMU (Q9PKY3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 601 Score = 36.6 bits (83), Expect = 0.019 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 P LYV V+ + M A E LIQL+K+HG W +P Sbjct: 562 PGMIDLYVKHKCVKSYVPMENAEEELIQLLKEHGVWKEP 600
>ISPG_LEPIC (Q72TR2) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 663 Score = 35.4 bits (80), Expect = 0.042 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDPPTE 39 P K LY G +V + + A E L+QLIKD+ W DP + Sbjct: 622 PGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNELWQDPSND 663
>ISPG_CHLPN (Q9Z8H0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 613 Score = 35.0 bits (79), Expect = 0.055 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = -2 Query: 149 LYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 LYV + V+ I M A E LI+L+++HG W DP Sbjct: 573 LYVKHTCVKAHIPMEDAEEELIRLLQEHGVWKDP 606
>ISPG_CHLCV (Q823I7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 606 Score = 34.7 bits (78), Expect = 0.072 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -2 Query: 149 LYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 LYV + V+ I M A E L++L+++HG W DP Sbjct: 572 LYVKHTCVKAHIPMEDAEEELVRLLQEHGVWKDP 605
>ISPG_CHLTR (O84060) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 602 Score = 34.7 bits (78), Expect = 0.072 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 P LYV V+ I + A E L+QL+K+HG W +P Sbjct: 563 PGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601
>ISPG_CHLAB (Q5L669) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 606 Score = 33.5 bits (75), Expect = 0.16 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -2 Query: 149 LYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 LYV + V+ I M A + L+ L+K+HG W DP Sbjct: 572 LYVKHTCVKAHIPMEQAEDELVLLLKEHGVWKDP 605
>ISPG_GLOVI (Q7NFA4) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 396 Score = 32.7 bits (73), Expect = 0.27 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 P LY G +++ G EAL+ LIK GRWVDP Sbjct: 359 PGTISLYRGREEIKKVPEARGV-EALVDLIKSDGRWVDP 396
>ISPG_SYNPX (Q7U712) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 398 Score = 31.6 bits (70), Expect = 0.61 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 P LY G +++ G ALIQLIK+ GRWV+P Sbjct: 360 PGVISLYRGRDEIRKVPEEEGVN-ALIQLIKEDGRWVEP 397
>ISPG_SYNEL (Q8DK70) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 402 Score = 30.8 bits (68), Expect = 1.0 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 P LY G V++ G AL++LIK GRWVDP Sbjct: 365 PGYISLYRGREEVKKVPEAEGVA-ALVELIKADGRWVDP 402
>ISPG_PROMP (Q7V215) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 405 Score = 30.8 bits (68), Expect = 1.0 Identities = 11/16 (68%), Positives = 15/16 (93%) Frame = -2 Query: 95 EALIQLIKDHGRWVDP 48 +ALI+LIKD G+W+DP Sbjct: 390 DALIRLIKDDGKWIDP 405
>ISPG_SYNY3 (P73672) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 403 Score = 30.8 bits (68), Expect = 1.0 Identities = 17/34 (50%), Positives = 19/34 (55%) Frame = -2 Query: 149 LYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 LY G ++R G E LI LIK GRWVDP Sbjct: 371 LYRGREEIKRVPETDGVQE-LINLIKADGRWVDP 403
>ISPG_SYNP6 (Q5N3W3) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 407 Score = 29.6 bits (65), Expect = 2.3 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 P LY G ++R G E LI LIK GRWV+P Sbjct: 366 PGTIALYRGRDEIKRVPEEQGVEE-LINLIKADGRWVEP 403
>ISPG_ANASP (P58666) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 408 Score = 29.3 bits (64), Expect = 3.0 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 P LY G +++ G E LI LIK GRWVDP Sbjct: 371 PGYISLYRGREEIKKVPEDKGVEE-LINLIKADGRWVDP 408
>ISPG_PROMA (Q7VBS7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 407 Score = 28.9 bits (63), Expect = 4.0 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 149 LYVGXSVVQRXIAMXGATEALIQLIKDHGRWVDP 48 LY G +++ G + AL++LIK G+W+DP Sbjct: 375 LYRGREEIRKVPEDEGVS-ALVELIKSDGKWIDP 407
>ISPG_PORGI (Q7MVT7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 581 Score = 28.5 bits (62), Expect = 5.2 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -2 Query: 164 PVKXXLYVGXSVVQRXIAMXGATEALIQLIKDHGRW 57 P + LY V+R I A + LI+LIK++G W Sbjct: 543 PGRIDLYKQKICVRRGIPQEQAVQQLIELIKENGDW 578 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,333,768 Number of Sequences: 219361 Number of extensions: 274530 Number of successful extensions: 480 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 476 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 480 length of database: 80,573,946 effective HSP length: 33 effective length of database: 73,335,033 effective search space used: 1760040792 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
