ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59i02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48) 28 5.6
2KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-ass... 28 5.6
3ALDH_VIBHA (Q56694) NADP-dependent fatty aldehyde dehydrogenase ... 28 7.3
4PHF2_MOUSE (Q9WTU0) PHD finger protein 2 (GRC5) 28 7.3
5CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48) 28 7.3
6POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48) 27 9.5
7LCMT2_SCHPO (O60157) Leucine carboxyl methyltransferase 2 (EC 2.... 27 9.5

>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +2

Query: 119 LATSSPLGQYKASSSAGCLICSILPSQT*PASTTLHDGWXNRVVVIGREERHVSKCXHAI 298
           L  ++PL     S+S      S +P+   P+ST +  GW   V    R    V K   AI
Sbjct: 555 LGATNPL-MNDGSNSGNIGTLSTIPTAAPPSSTGVRKGWHEHVTQDLRSHL-VHKLVQAI 612

Query: 299 FHHPTPTIL 325
           F  P P  L
Sbjct: 613 FPTPDPAAL 621



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>KRA24_HUMAN (Q9BYR9) Keratin-associated protein 2-4 (Keratin-associated protein|
           2.4) (High sulfur keratin-associated protein 2.4)
          Length = 128

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 101 CCVFAVKRDACCCKAIT*NRVLCK 30
           CC     RD CCC+ +T    +C+
Sbjct: 19  CCQPCCCRDPCCCRPVTCQTTVCR 42



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>ALDH_VIBHA (Q56694) NADP-dependent fatty aldehyde dehydrogenase (EC 1.2.1.4)|
          Length = 510

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 174 RHPAEEEALYCPSGLLVANTTYADLLCL 91
           +HPA EE ++ P  L+V     AD+L L
Sbjct: 370 KHPAWEEEIFGPQSLIVVCENVADMLSL 397



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>PHF2_MOUSE (Q9WTU0) PHD finger protein 2 (GRC5)|
          Length = 1096

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 125  TSSPLGQYKASSSAGCLICSILPSQT*PASTT 220
            T+SP     AS+S G    S  P+ T PASTT
Sbjct: 957  TASPSISTSASASTGTTSASTTPASTTPASTT 988



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>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = +2

Query: 122 ATSSPLGQYKASSSAGCLICSILPSQT*PASTTLHDGWXNRVVVIGREERHVSKCXHAIF 301
           AT+  +     S + G L  S +P+   P+ST +  GW   V    R    V K   AIF
Sbjct: 556 ATNPLMNDGSNSGNIGSL--STIPTAAPPSSTGVRKGWHEHVTQDLRSHL-VHKLVQAIF 612

Query: 302 HHPTPTIL 325
             P P  L
Sbjct: 613 PTPDPAAL 620



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>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1839

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 131  SPLGQYKASSSAGCLICSILPSQT*PASTTLHD 229
            S L ++     AG L+ SILPS   P  + +HD
Sbjct: 1730 SYLSEFSTGHLAGDLVTSILPSHLLPYQSAVHD 1762



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>LCMT2_SCHPO (O60157) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)|
          Length = 681

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 44  DFML*PYNNMRPS*LQ-RHSKSAYVVLATSSPLGQYKASSSAGCLICS 184
           DF   PY + R S +  +H+ S+YVVL    P G        GCLI S
Sbjct: 465 DFPSLPYASHRASSVSIKHNGSSYVVLLAGKPFG--------GCLIWS 504


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,430,523
Number of Sequences: 219361
Number of extensions: 949105
Number of successful extensions: 2025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2025
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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