>Y005_SYNY3 (Q55680) Hypothetical protein sll0005|
          Length = 681

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 551 ALSFXLSDRGDFFREFILDEIVKAIDAVSREQLLQIASSFGVR 423
           A  F LSDRG F R+ ++ E+V +ID + R    Q++ +   R
Sbjct: 529 ATEFLLSDRGQFIRDRLVAELVNSIDQLGRNTWQQVSHNIQER 571

>LDH6B_HUMAN (Q9BYZ2) L-lactate dehydrogenase A-like 6B (EC 1.1.1.27)|
          Length = 381

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +1

Query: 310 RNLATFSTLFKMILSSS----VIVGSNAPDLTGTMPKTGTGFLTPKDEAICSNCSLETAS 477
           RN+A F  +   I+  S    +I+ SN  D+   +    + F  PK+  I S C+L+TA 
Sbjct: 161 RNVAIFKLMISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAF--PKNRIIGSGCNLDTAR 218

Query: 478 MAFTISSRMNSRKKS 522
             F I  ++    +S
Sbjct: 219 FRFLIGQKLGIHSES 233

>RDR1_SCHPO (O14227) RNA-dependent RNA polymerase homolog 1 (Protein rdp1)|
          Length = 1215

 Score = 25.0 bits (53), Expect(2) = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 115 RRKTKLRSLHKNASRITRANTRDDNRL 195
           +++ K  S+H N +++  AN R+DN L
Sbjct: 32  KKQKKWASVHNNEAQLHSANKRNDNCL 58



 Score = 23.9 bits (50), Expect(2) = 3.9
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 282 DCLICRPSRQKLGDLLD-IVQDDPV 353
           +CLI R S  +LGD++  +++D PV
Sbjct: 56  NCLIQRSSTWRLGDMITLVIKDIPV 80

>RCAL1_RHEAM (P84617) Rheacalcin-1 (RCA-1)|
          Length = 135

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 399 GSCEVGSI-ASYNHRGRQDHLEQCREGRQVSDGWDG 295
           G C + SI  S  HR     + QCR G +  D W G
Sbjct: 39  GGCHLASIHTSEEHRAVAKFISQCRRGEEGDDVWIG 74

>CH601_METCA (Q60AY0) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1)|
          Length = 545

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 23/99 (23%), Positives = 45/99 (45%)
 Frame = -2

Query: 491 IVKAIDAVSREQLLQIASSFGVRNPVPVFGMVPVRSGALLPTITEEDRIILNNVEKVAKF 312
           I +A+D V +E ++ +    G+ N + +   +    G L P         +NN +     
Sbjct: 162 IAEAMDKVGKEGVITVEDGSGLENQLDIVEGMQFDRGYLSP-------YFINNQQS---- 210

Query: 311 LTAGTANQTVNGDVNVVSLVQELLPVLPSISSKILPDVL 195
           ++A   N  +  +   +S ++ELLPVL  ++    P V+
Sbjct: 211 MSAELENPFILINEKKISNIRELLPVLEGVAKAGRPLVI 249

>SECF_HELPY (O26073) Protein-export membrane protein secF|
          Length = 323

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
 Frame = +1

Query: 208 RIFDEMLGSTGKSSCTR-DTTFTSPLTV*FAVPAVRNLATFSTLFKMIL-----SSSVIV 369
           RI +EML    K++    D   +S LT        R L T  T+F ++L      S +I+
Sbjct: 211 RIREEMLSQKTKNATQAIDEAISSTLT--------RTLLTSLTVFFVVLILCVFGSKIII 262

Query: 370 GSNAPDLTGTMPKTGTG-FLTPK 435
           G + P L GT+  T +  F+ PK
Sbjct: 263 GFSLPMLIGTIVGTYSSIFIAPK 285

>SECF_HELPJ (Q9ZJ65) Protein-export membrane protein secF|
          Length = 323

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
 Frame = +1

Query: 208 RIFDEMLGSTGKSSCTR-DTTFTSPLTV*FAVPAVRNLATFSTLFKMIL-----SSSVIV 369
           RI +EML    K++    D   +S LT        R L T  T+F ++L      S +I+
Sbjct: 211 RIREEMLSQKTKNATQAIDEAISSTLT--------RTLLTSLTVFFVVLILCVFGSKIII 262

Query: 370 GSNAPDLTGTMPKTGTG-FLTPK 435
           G + P L GT+  T +  F+ PK
Sbjct: 263 GFSLPMLIGTIVGTYSSIFIAPK 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,601,317
Number of Sequences: 219361
Number of extensions: 1754674
Number of successful extensions: 5208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5208
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)