ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah59g22 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 86.3 bits (212), Expect(2) = 1e-34 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -3 Query: 214 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 101 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464 Score = 78.2 bits (191), Expect(2) = 1e-34 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 262 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 390 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 66.6 bits (161), Expect(2) = 3e-25 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -3 Query: 217 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 101 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476 Score = 66.2 bits (160), Expect(2) = 3e-25 Identities = 31/38 (81%), Positives = 35/38 (92%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 262 LVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 400 LVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 67.8 bits (164), Expect(2) = 2e-24 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -3 Query: 214 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 101 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474 Score = 62.0 bits (149), Expect(2) = 2e-24 Identities = 29/38 (76%), Positives = 34/38 (89%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 262 LV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 400 LVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 63.9 bits (154), Expect(2) = 3e-23 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -3 Query: 214 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 107 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470 Score = 62.0 bits (149), Expect(2) = 3e-23 Identities = 29/38 (76%), Positives = 34/38 (89%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 262 LVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 398 LVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 67.0 bits (162), Expect = 1e-11 Identities = 31/38 (81%), Positives = 35/38 (92%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 262 LVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 400 LVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 67.0 bits (162), Expect = 1e-11 Identities = 31/38 (81%), Positives = 36/38 (94%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 262 LV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 390 LVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 66.6 bits (161), Expect = 1e-11 Identities = 31/38 (81%), Positives = 35/38 (92%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 262 LVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 387 LVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 62.0 bits (149), Expect = 3e-10 Identities = 28/37 (75%), Positives = 35/37 (94%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 265 LV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 396 LVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 62.0 bits (149), Expect = 3e-10 Identities = 29/36 (80%), Positives = 34/36 (94%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 268 LV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 400 LVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 60.8 bits (146), Expect = 8e-10 Identities = 27/37 (72%), Positives = 36/37 (97%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 265 LVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 404 LVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 60.8 bits (146), Expect = 8e-10 Identities = 27/37 (72%), Positives = 36/37 (97%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 265 LVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 402 LVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 59.3 bits (142), Expect = 2e-09 Identities = 27/36 (75%), Positives = 33/36 (91%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 268 LVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 404 LVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 58.9 bits (141), Expect = 3e-09 Identities = 27/37 (72%), Positives = 32/37 (86%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 265 LVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 404 LVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 56.6 bits (135), Expect = 1e-08 Identities = 26/34 (76%), Positives = 31/34 (91%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 274 LVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 399 LVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 35.8 bits (81), Expect = 0.026 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = -1 Query: 375 LVQEQDNVKRVQLADTYMSQAAL 307 LV EQ+NVKRVQLAD Y+S A L Sbjct: 372 LVDEQENVKRVQLADAYLSGAEL 394
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -3 Query: 274 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 116 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +1 Query: 118 CRRRSLPLGRSSWHFGRCNLP 180 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +1 Query: 232 RWWVCMENFLTVEGTSLHRILVSITQSCLAHVGVSKLHT 348 RW N+ ++ GT+LH +LV+ QSC + +S L T Sbjct: 749 RWLTLHSNWESLNGTTLHELLVN-GQSCESRSKISLLCT 786
>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)| Length = 462 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = -1 Query: 357 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 223 NVK V + D A N M+ GSF I+ HP + A Sbjct: 311 NVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGA 355
>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic| region Length = 1764 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -3 Query: 184 VPEGCTDQNAKNYDPTARSD 125 VPE TD N NYD T R D Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 Query: 188 ARAGRLHRPKCQELRPNGKERRR 120 A+ R R K Q LRPNG E+RR Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169
>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)| (EF-1AO1) Length = 461 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -1 Query: 357 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 223 NVK + + D A N M+ GSF I+ HP ++A Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355
>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)| (EF-1AO) (42S p48) Length = 461 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -1 Query: 357 NVKRVQLADTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 223 NVK + + D A N M+ GSF I+ HP ++A Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355
>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox| protein PBX4) Length = 378 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 271 LLRLENSPYTPTISCCIGGGKGAQQGTLPVPEGCTDQNA 155 LLRL+N +S G+GA G+ P GC + N+ Sbjct: 88 LLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNS 126
>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c| Length = 288 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 70 KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 174 ++S+ +S KGS + PL + W FG CN Sbjct: 4 RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38
>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)| (FGAM synthase I) Length = 220 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +2 Query: 44 WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 205 ++RCG + ++K K AVV C VL G+L GA R+ +C Sbjct: 57 YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,428,325 Number of Sequences: 219361 Number of extensions: 1088617 Number of successful extensions: 2822 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2821 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
