ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC... 33 0.63
2EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2... 30 4.1

>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1099

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 156 VSIQFSMNDPHSNNMFMLHRVDSNPRLSVPTVNPRVQRKIP 278
           +++QF++ +PHS+N          PR+ V  VNPR  R +P
Sbjct: 838 MNVQFAIEEPHSDN----------PRIYVLEVNPRASRTVP 868



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>EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)|
           (Exo-1,3-beta-glucanase)
          Length = 429

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 433 IILLVSTLIGICLLMNMPLTKDTLLYSNVKI 341
           ++ L+S L+ +CL   +PL+K    Y N K+
Sbjct: 6   VVSLISLLVSVCLAQPLPLSKRYFEYENYKV 36


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,907,759
Number of Sequences: 219361
Number of extensions: 1419831
Number of successful extensions: 3508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3506
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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