ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (... 29 2.6
2YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4 ... 28 5.8
3SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SAL... 28 7.6
4YFAX_ECOLI (P77732) Putative HTH-type transcriptional regulator ... 27 10.0
5HSP7S_PEA (Q02028) Stromal 70 kDa heat shock-related protein, ch... 27 10.0

>SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (MSal-2)|
          Length = 1004

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 149  HDPLTI--LQLLSVKSASITSPSLGPFPELXDPAL 247
            H P  I  L L+   S+SI SP L PFP   DP +
Sbjct: 969  HGPQNIATLSLVPGCSSSIPSPGLSPFPRKDDPTM 1003



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>YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 1183

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
 Frame = +2

Query: 26  YCYEFHILNKQLADTWSQDTKITSST*NATQQ*NSG---------LCITHHDPLTILQLL 178
           YCY F  +   L   W QDT + S     T+   +               + P+ I+ LL
Sbjct: 301 YCYAFTQIRGSLPIFWEQDTSLISPKIQITRSVEATQPTFDEHFIRLFKKYGPVHIINLL 360

Query: 179 SVKSASI 199
           S KS+ I
Sbjct: 361 STKSSEI 367



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>SALL2_HUMAN (Q9Y467) Sal-like protein 2 (Zinc finger protein SALL2) (HSal2)|
          Length = 1007

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 149  HDPLTI--LQLLSVKSASITSPSLGPFPELXDPAL 247
            H P  I  L L+   S SITS  L PFP   DP +
Sbjct: 972  HGPQNIAALSLVPGCSPSITSTGLSPFPRKDDPTI 1006



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>YFAX_ECOLI (P77732) Putative HTH-type transcriptional regulator yfaX|
          Length = 260

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 206 EMLSTRTSQIAIEGWSMDHGE*YIDLSSIA 117
           + L    ++I  +GWS D+GE Y D+  +A
Sbjct: 174 QQLHEELARIRRQGWSYDNGEDYADVRCVA 203



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>HSP7S_PEA (Q02028) Stromal 70 kDa heat shock-related protein, chloroplast|
           precursor
          Length = 706

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -2

Query: 210 DGDVIDADFTDS 175
           +GDVIDADFTDS
Sbjct: 694 EGDVIDADFTDS 705


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,055,715
Number of Sequences: 219361
Number of extensions: 615407
Number of successful extensions: 1235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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