ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah59d20 |
|---|---|
| Clone Library Name | barley_pub |
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 67.0 bits (162), Expect = 1e-11 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENLFDH+ADPV NNAWA+ATNF PG Sbjct: 231 VTGKGPIENLFDHVADPVANNAWAYATNFVPG 262
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 67.0 bits (162), Expect = 1e-11 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL+DH+ADPV NNAWAFATNF PG Sbjct: 233 VTGKGPIENLYDHVADPVANNAWAFATNFVPG 264
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 67.0 bits (162), Expect = 1e-11 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENLFDH+ADPV NNAWA+ATNF PG Sbjct: 233 VTGKGPIENLFDHVADPVANNAWAYATNFVPG 264
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 66.6 bits (161), Expect = 2e-11 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENLFDH+ADPV NNAWA+ATNF PG Sbjct: 233 VTGKGPIENLFDHLADPVANNAWAYATNFVPG 264
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 65.9 bits (159), Expect = 3e-11 Identities = 26/32 (81%), Positives = 30/32 (93%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP++NL+DH+ADPV NNAWAFATNF PG Sbjct: 233 VTGKGPIQNLYDHVADPVANNAWAFATNFVPG 264
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 65.5 bits (158), Expect = 4e-11 Identities = 26/32 (81%), Positives = 30/32 (93%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL+DH+ADPV NNAWA+ATNF PG Sbjct: 118 VTGKGPIENLYDHLADPVANNAWAYATNFVPG 149
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 65.5 bits (158), Expect = 4e-11 Identities = 26/32 (81%), Positives = 30/32 (93%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL+DH+ADPV NNAWA+ATNF PG Sbjct: 234 VTGKGPIENLYDHLADPVANNAWAYATNFVPG 265
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 65.5 bits (158), Expect = 4e-11 Identities = 28/32 (87%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DHIADPV NNAWAFATNF PG Sbjct: 232 VTGKGPIENLADHIADPVANNAWAFATNFVPG 263
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 64.3 bits (155), Expect = 9e-11 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DHIADPV NNAWA+ATNF PG Sbjct: 205 VTGKGPIENLSDHIADPVANNAWAYATNFVPG 236
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 63.9 bits (154), Expect = 1e-10 Identities = 27/33 (81%), Positives = 29/33 (87%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPGS 80 VTGKGP+ENLFDH+ DPV NNAW FAT FAPGS Sbjct: 236 VTGKGPLENLFDHLDDPVANNAWVFATKFAPGS 268
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 63.9 bits (154), Expect = 1e-10 Identities = 28/32 (87%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DHIADPV NNAWAFATNF PG Sbjct: 235 VTGKGPLENLADHIADPVNNNAWAFATNFVPG 266
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 63.9 bits (154), Expect = 1e-10 Identities = 28/32 (87%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DHIADPV NNAWAFATNF PG Sbjct: 235 VTGKGPLENLADHIADPVNNNAWAFATNFVPG 266
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 63.9 bits (154), Expect = 1e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 235 VTGKGPIENLADHLADPVNNNAWAFATNFVPG 266
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 63.9 bits (154), Expect = 1e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 235 VTGKGPIENLADHLADPVNNNAWAFATNFVPG 266
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 63.5 bits (153), Expect = 1e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADP +NNAWA+ATNF PG Sbjct: 233 VTGKGPIENLSDHLADPAVNNAWAYATNFTPG 264
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 232 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 263
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 232 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 263
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 234 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 234 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 234 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 92 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 123
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 235 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 266
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWAFATNF PG Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 264
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 63.2 bits (152), Expect = 2e-10 Identities = 27/33 (81%), Positives = 30/33 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPGS 80 VTGKGP+ENL DHIADPV NNAWA+ATNF PG+ Sbjct: 230 VTGKGPLENLADHIADPVNNNAWAYATNFVPGN 262
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 62.8 bits (151), Expect = 2e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 246 VTGKGPIENLADHLADPVNNNAWAYATNFVPG 277
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 62.8 bits (151), Expect = 2e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 246 VTGKGPIENLADHLADPVNNNAWAYATNFVPG 277
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 62.8 bits (151), Expect = 2e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 242 VTGKGPIENLADHLADPVNNNAWAYATNFVPG 273
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 62.8 bits (151), Expect = 2e-10 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DHIADPV NNAWA+ATNF PG Sbjct: 233 VTGKGPLENLADHIADPVNNNAWAYATNFVPG 264
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 174 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 205
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 235 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 235 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 266
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 28/32 (87%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DHI DPV NNAWA+ATNF PG Sbjct: 233 VTGKGPIENLSDHINDPVANNAWAYATNFVPG 264
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 264
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 223 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 254
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+ATNF PG Sbjct: 229 VTGKGPLENLADHLADPVNNNAWAYATNFVPG 260
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 61.2 bits (147), Expect = 7e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP++NL DH+ADPV NNAWA+ATNF PG Sbjct: 235 VTGKGPLDNLVDHLADPVNNNAWAYATNFVPG 266
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 61.2 bits (147), Expect = 7e-10 Identities = 25/32 (78%), Positives = 28/32 (87%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ DPV NNAWA+ATNF PG Sbjct: 232 VTGKGPIENLADHLTDPVNNNAWAYATNFVPG 263
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 60.8 bits (146), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW++ATNF PG Sbjct: 234 VTGKGPLENLADHLADPVNNNAWSYATNFVPG 265
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 60.8 bits (146), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW++ATNF PG Sbjct: 234 VTGKGPLENLADHLADPVNNNAWSYATNFVPG 265
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 60.8 bits (146), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW++ATNF PG Sbjct: 237 VTGKGPLENLADHLADPVNNNAWSYATNFVPG 268
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 60.8 bits (146), Expect = 9e-10 Identities = 26/32 (81%), Positives = 28/32 (87%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW FATNF PG Sbjct: 235 VTGKGPLENLADHLADPVNNNAWNFATNFVPG 266
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 60.8 bits (146), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW++ATNF PG Sbjct: 235 VTGKGPLENLADHLADPVNNNAWSYATNFVPG 266
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 60.8 bits (146), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW++ATNF PG Sbjct: 235 VTGKGPLENLADHLADPVNNNAWSYATNFVPG 266
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 60.8 bits (146), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW++ATNF PG Sbjct: 235 VTGKGPLENLADHLADPVNNNAWSYATNFVPG 266
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 60.8 bits (146), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW++ATNF PG Sbjct: 196 VTGKGPLENLADHLADPVNNNAWSYATNFVPG 227
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 60.8 bits (146), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAW++ATNF PG Sbjct: 84 VTGKGPLENLADHLADPVNNNAWSYATNFVPG 115
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 60.5 bits (145), Expect = 1e-09 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+A+PV NNAWA+ATNF PG Sbjct: 213 VTGKGPLENLADHLAEPVNNNAWAYATNFVPG 244
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 59.7 bits (143), Expect = 2e-09 Identities = 24/32 (75%), Positives = 29/32 (90%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH++DPV NNAW++ATNF PG Sbjct: 236 VTGKGPLENLADHLSDPVNNNAWSYATNFVPG 267
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 59.3 bits (142), Expect = 3e-09 Identities = 25/32 (78%), Positives = 28/32 (87%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+A PV NNAWA+ATNF PG Sbjct: 231 VTGKGPLENLADHLAGPVNNNAWAYATNFVPG 262
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 57.8 bits (138), Expect = 8e-09 Identities = 25/32 (78%), Positives = 27/32 (84%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+E+L DHIADPV NNAW ATNF PG Sbjct: 234 VTGKGPLEDLADHIADPVNNNAWLIATNFVPG 265
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 57.4 bits (137), Expect = 1e-08 Identities = 24/32 (75%), Positives = 27/32 (84%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGP+ENL DH+ADPV NNAWA+AT PG Sbjct: 224 VTGKGPLENLADHLADPVNNNAWAYATKLCPG 255
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 57.0 bits (136), Expect = 1e-08 Identities = 23/31 (74%), Positives = 27/31 (87%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAP 86 VTGKGP+ENL DH+ DPV NNAW++ATNF P Sbjct: 235 VTGKGPLENLADHLVDPVNNNAWSYATNFVP 265
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 55.8 bits (133), Expect = 3e-08 Identities = 22/33 (66%), Positives = 27/33 (81%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPGS 80 VTGKGP+ENL DH+ +PV NNAW +AT F PG+ Sbjct: 233 VTGKGPLENLLDHLDNPVANNAWVYATKFVPGA 265
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 54.7 bits (130), Expect = 7e-08 Identities = 23/33 (69%), Positives = 27/33 (81%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPGS 80 VTGKGP+ENL DH+ADPV NNAWA+A PG+ Sbjct: 236 VTGKGPLENLNDHLADPVANNAWAYAPTSPPGT 268
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 53.5 bits (127), Expect = 2e-07 Identities = 22/33 (66%), Positives = 28/33 (84%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPGS 80 VTGKGPV+NL DH+A+P +NNA+AFAT F P + Sbjct: 221 VTGKGPVQNLDDHLANPTVNNAFAFATKFTPSA 253
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 52.4 bits (124), Expect = 3e-07 Identities = 22/32 (68%), Positives = 26/32 (81%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPG 83 VTGKGPV+NL DH+ADP +N A+A AT F PG Sbjct: 221 VTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 50.8 bits (120), Expect = 1e-06 Identities = 21/31 (67%), Positives = 26/31 (83%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAP 86 VTGKGP+ENL DH+A+P NNA+A+AT F P Sbjct: 242 VTGKGPIENLTDHLANPAENNAFAYATKFTP 272
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 49.7 bits (117), Expect = 2e-06 Identities = 21/33 (63%), Positives = 26/33 (78%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPGS 80 VTGKGP++NL DH+ADP NNA+A AT F P + Sbjct: 224 VTGKGPIQNLADHLADPGTNNAFAAATKFTPSA 256
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 36.6 bits (83), Expect = 0.019 Identities = 15/21 (71%), Positives = 17/21 (80%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINN 116 VTG GP +NL DH+ADPV NN Sbjct: 245 VTGVGPYQNLLDHLADPVNNN 265
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 34.3 bits (77), Expect = 0.094 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNA-WAFATNFAP 86 VTG+GPVEN H+ DP +N A T FAP Sbjct: 90 VTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 33.9 bits (76), Expect = 0.12 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINN 116 VTG+GPVENL H++DP NN Sbjct: 245 VTGEGPVENLAKHLSDPFGNN 265
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast| precursor (LHCII type I CAB-AB10) (LHCP) Length = 268 Score = 33.1 bits (74), Expect = 0.21 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = -1 Query: 178 VTGKGPVENLFDHIADPVINNAWAFATNFAPGS 80 V+ K +ENL DH+ V NNA + TNF PG+ Sbjct: 236 VSRKDRLENLADHLGWTVNNNALSNVTNFVPGN 268
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 32.0 bits (71), Expect = 0.47 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = -1 Query: 178 VTGKGPVENLFDHIADP 128 VTGKGP ENL H++DP Sbjct: 225 VTGKGPFENLLQHLSDP 241
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 31.6 bits (70), Expect = 0.61 Identities = 16/30 (53%), Positives = 21/30 (70%) Frame = -1 Query: 175 TGKGPVENLFDHIADPVINNAWAFATNFAP 86 TG GP++NLF H+ADP +A FA F+P Sbjct: 243 TGTGPIDNLFAHLADP--GHATIFAA-FSP 269
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 31.6 bits (70), Expect = 0.61 Identities = 16/30 (53%), Positives = 21/30 (70%) Frame = -1 Query: 175 TGKGPVENLFDHIADPVINNAWAFATNFAP 86 TG GP++NLF H+ADP +A FA F+P Sbjct: 243 TGTGPIDNLFAHLADP--GHATIFAA-FSP 269
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 29.3 bits (64), Expect = 3.0 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -1 Query: 172 GKGPVENLFDHIADPVINN 116 G GP+ENL H+ADP NN Sbjct: 215 GTGPLENLATHLADPWHNN 233
>CBX8_MOUSE (Q9QXV1) Chromobox protein homolog 8 (Polycomb 3 homolog) (Pc3)| (MPc3) Length = 362 Score = 27.7 bits (60), Expect = 8.8 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -3 Query: 155 EPLRPHRRPSDQQRVGLRHQLRPRKLNVFSS 63 EPL P +RP + GL L+ RKL+ SS Sbjct: 179 EPLDPSQRPLGEPSAGLGEYLKGRKLDETSS 209
>GALT5_HUMAN (Q7Z7M9) Polypeptide N-acetylgalactosaminyltransferase 5 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 5) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5) (Polypeptide GalNAc transferase 5) (GalNAc-T5) (pp-GaNTase 5) Length = 940 Score = 27.7 bits (60), Expect = 8.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -3 Query: 149 LRPHRRPSDQQRVGLRHQLRPRKLNVFSSHPSVHRHE 39 L PHR P Q L L P K+N+ + PS ++ Sbjct: 371 LAPHRVPLSQTNHALTGGLEPAKINITAKAPSTEYNQ 407 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,287,171 Number of Sequences: 219361 Number of extensions: 368108 Number of successful extensions: 1064 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 1060 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1064 length of database: 80,573,946 effective HSP length: 34 effective length of database: 73,115,672 effective search space used: 1754776128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
