ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59b16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U58023.1|PSU58023 Pseudoroegneria stipifolia RAPD fragment fr... 88 4e-14
2gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 50 0.008
3gb|AY204215.1| Hordeum vulgare subsp. spontaneum clone Ghs-L-4 T... 50 0.008
4gb|AC101776.7| Mus musculus chromosome 7, clone RP24-118K20, com... 44 0.48
5gb|DQ128056.1| Triticum aestivum clone p3-5, genomic sequence 44 0.48
6gb|DQ128055.1| Triticum aestivum clone p3-3, genomic sequence 44 0.48
7gb|DQ128054.1| Triticum aestivum clone p3-2, genomic sequence 44 0.48
8gb|DQ145754.1| Triticum aestivum clone A3-3, genomic sequence 44 0.48
9gb|DQ128047.1| Triticum aestivum clone P8-1 Ty3/gypsy-like retro... 44 0.48
10gb|DQ128046.1| Triticum aestivum clone P4-6 Ty3/gypsy-like retro... 44 0.48
11gb|DQ128042.1| Triticum aestivum clone A6-6 Ty3/gypsy-like retro... 44 0.48
12gb|DQ128041.1| Triticum aestivum clone A4-5 Ty3/gypsy-like retro... 44 0.48
13gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retro... 44 0.48
14gb|DQ128038.1| Triticum aestivum clone A4-1 Ty3/gypsy-like retro... 44 0.48
15gb|DQ128035.1| Triticum aestivum clone A3-4 Ty3/gypsy-like retro... 44 0.48
16gb|DQ128034.1| Triticum aestivum clone A3-3 Ty3/gypsy-like retro... 44 0.48
17gb|DQ128033.1| Triticum aestivum clone A2-6 Ty3/gypsy-like retro... 44 0.48
18gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete... 44 0.48
19gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 44 0.48
20ref|XM_638999.1| Dictyostelium discoideum hypothetical protein (... 42 1.9
21ref|XM_637656.1| Dictyostelium discoideum hypothetical protein (... 42 1.9
22gb|AC022453.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 1.9
23gb|AC145991.2| Pan troglodytes BAC clone RP43-170F9 from 7, comp... 42 1.9
24gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173... 42 1.9
25gb|AC018688.9| Homo sapiens BAC clone RP11-462H3 from UL, comple... 42 1.9
26gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, com... 42 1.9
27gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6... 42 1.9
28gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1... 42 1.9
29emb|Y17045.1|PFY17045 Plasmodium falciparum gltS gene 42 1.9
30gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 42 1.9
31gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete se... 42 1.9
32gb|AC125394.27| Pan troglodytes clone rp43-45i3, complete sequence 42 1.9
33gb|AC034187.6| Homo sapiens chromosome 3 clone RP11-202A21 map 3... 42 1.9
34dbj|AK012985.1| Mus musculus 10, 11 days embryo whole body cDNA,... 42 1.9
35ref|NM_001026399.2| Caenorhabditis elegans M01B12.5a (M01B12.5) ... 42 1.9
36gb|AC012513.12| Homo sapiens BAC clone RP11-566E18 from 2, compl... 42 1.9
37gb|AC069155.6| Homo sapiens BAC clone RP11-737C8 from 2, complet... 42 1.9
38gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067... 42 1.9
39emb|BX248502.17| Zebrafish DNA sequence from clone DKEY-284M10 i... 42 1.9
40dbj|BS000178.1| Pan troglodytes chromosome 22 clone:RP43-042C06,... 42 1.9
41dbj|BS000179.1| Pan troglodytes chromosome 22 clone:RP43-082J09,... 42 1.9
42gb|AC008123.9|AC008123 Homo sapiens 2q35 BAC RPCI11-1064L18 (Ros... 42 1.9
43dbj|AP001707.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.9
44gb|AC119902.12| Mus musculus chromosome 8, clone RP24-235G23, co... 42 1.9
45dbj|AP000885.1| Homo sapiens genomic DNA, chromosome 21q22.1, cl... 42 1.9
46ref|XM_631315.1| Dictyostelium discoideum hypothetical protein (... 40 7.4
47gb|DQ128043.1| Triticum aestivum clone A8-1 Ty3/gypsy-like retro... 40 7.4
48ref|XM_841366.1| Trypanosoma brucei TREU927 hypothetical protein... 40 7.4
49ref|XM_724636.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 7.4
50ref|XM_660159.1| Cryptosporidium hominis TU502 hypothetical prot... 40 7.4
51emb|BX936361.4| Human DNA sequence from clone CITF22-91B8 on chr... 40 7.4
52emb|AL357566.12| Human DNA sequence from clone RP11-513B7 on chr... 40 7.4
53emb|AL158150.14| Human DNA sequence from clone RP11-220B22 on ch... 40 7.4
54emb|AL158093.8| Human DNA sequence from clone RP5-959I16 on chro... 40 7.4
55emb|AL138812.13| Human DNA sequence from clone RP1-276E15 on chr... 40 7.4
56emb|AL034369.1|HSA149D17 Human DNA sequence from clone RP6-149D1... 40 7.4
57gb|AC026970.7| Homo sapiens chromosome 11, clone RP11-472K20, co... 40 7.4
58gb|AC063965.8| Homo sapiens chromosome 10 clone RP11-380G5, comp... 40 7.4
59gb|AC002412.3| Homo sapiens chromosome X clone bWXD105, complete... 40 7.4
60gb|AC018684.3| Homo sapiens BAC clone RP11-424H16 from 10, compl... 40 7.4
61gb|AC090467.6| Homo sapiens chromosome 11, clone RP11-634M17, co... 40 7.4
62gb|U64835.1| Caenorhabditis elegans cosmid T09D3, complete sequence 40 7.4
63gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, com... 40 7.4
64gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 7.4
65gb|AC020895.8| Homo sapiens chromosome 19 clone CTC-312O10, comp... 40 7.4
66gb|AC011701.22|AC011701 Homo sapiens 12 BAC RP11-937I21 (Roswell... 40 7.4
67gb|AC104685.2| Homo sapiens BAC clone RP11-58H15 from 4, complet... 40 7.4
68gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complet... 40 7.4
69gb|AF274942.1|AF274942 Homo sapiens PNAS-17 mRNA, complete cds 40 7.4
70gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, compl... 40 7.4
71gb|DQ217942.1| Homo sapiens EGF-like module containing mucin-lik... 40 7.4
72gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, comple... 40 7.4
73gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, comple... 40 7.4
74emb|AL671962.5| Mouse DNA sequence from clone RP23-163A2 on chro... 40 7.4
75ref|NM_209626.1| Eremothecium gossypii ADR177Cp (ADR177C), mRNA 40 7.4
76gb|AF067844.1|AF067844 Homo sapiens chromosome 10 clone PTEN, co... 40 7.4
77gb|AC004070.1|AC004070 Human Chromosome X, complete sequence 40 7.4
78emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chr... 40 7.4
79emb|AL132992.4|CNS01DTZ Human chromosome 14 DNA sequence BAC C-2... 40 7.4
80gb|AC110491.5| Homo sapiens 3 BAC RP11-389G6 (Roswell Park Cance... 40 7.4 
>gb|U58023.1|PSU58023 Pseudoroegneria stipifolia RAPD fragment from primer OPN01
          Length = 817

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                   
Query: 197 ctggcatgacacgccaggtgagtactttgaatgtactcgcaagctcacaacaaaca 252
           ||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 601 ctggcatgataagccaggtgagtactttgaatgtactcgcaagctcacagcaaaca 656
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>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 214    gtgagtactttgaatgtactcgcaa 238
              |||||||||||||||||||||||||
Sbjct: 265797 gtgagtactttgaatgtactcgcaa 265773
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>gb|AY204215.1| Hordeum vulgare subsp. spontaneum clone Ghs-L-4 Ty3-gypsy
           retrotransposon RT gene, partial sequence
          Length = 477

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 214 gtgagtactttgaatgtactcgcaa 238
           |||||||||||||||||||||||||
Sbjct: 386 gtgagtactttgaatgtactcgcaa 410
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>gb|AC101776.7| Mus musculus chromosome 7, clone RP24-118K20, complete sequence
          Length = 177972

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 472    ccatcattatcatcactatcat 493
              ||||||||||||||||||||||
Sbjct: 143797 ccatcattatcatcactatcat 143776
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>gb|DQ128056.1| Triticum aestivum clone p3-5, genomic sequence
          Length = 374

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 261 gtgagtactttgaaagtactcgcaag 236
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>gb|DQ128055.1| Triticum aestivum clone p3-3, genomic sequence
          Length = 484

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 257 gtgagtactttgaaagtactcgcaag 232
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>gb|DQ128054.1| Triticum aestivum clone p3-2, genomic sequence
          Length = 310

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 263 gtgagtactttgaaagtactcgcaag 238
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>gb|DQ145754.1| Triticum aestivum clone A3-3, genomic sequence
          Length = 493

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 261 gtgagtactttgaaagtactcgcaag 236
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>gb|DQ128047.1| Triticum aestivum clone P8-1 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 473

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 261 gtgagtactttgaaagtactcgcaag 236
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>gb|DQ128046.1| Triticum aestivum clone P4-6 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 494

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 262 gtgagtactttgaaagtactcgcaag 237
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>gb|DQ128042.1| Triticum aestivum clone A6-6 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 336

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 104 gtgagtactttgaaagtactcgcaag 79
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>gb|DQ128041.1| Triticum aestivum clone A4-5 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 487

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 255 gtgagtactttgaaagtactcgcaag 230
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>gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 470

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 256 gtgagtactttgaaagtactcgcaag 231
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>gb|DQ128038.1| Triticum aestivum clone A4-1 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 410

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 179 gtgagtactttgaaagtactcgcaag 154
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>gb|DQ128035.1| Triticum aestivum clone A3-4 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 486

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 254 gtgagtactttgaaagtactcgcaag 229
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>gb|DQ128034.1| Triticum aestivum clone A3-3 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 342

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 110 gtgagtactttgaaagtactcgcaag 85
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>gb|DQ128033.1| Triticum aestivum clone A2-6 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 258

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 214 gtgagtactttgaatgtactcgcaag 239
           |||||||||||||| |||||||||||
Sbjct: 26  gtgagtactttgaaagtactcgcaag 1
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>gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete sequence
          Length = 135883

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 472    ccatcattatcatcactatcat 493
              ||||||||||||||||||||||
Sbjct: 122671 ccatcattatcatcactatcat 122650
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 37/41 (90%), Gaps = 2/41 (4%)
 Strand = Plus / Plus

                                                        
Query: 447     tgctaccatact--caaacgagttcttccatcattatcatc 485
               ||||||||||||  ||||||||| ||||||||||| |||||
Sbjct: 3035500 tgctaccatactgacaaacgagtccttccatcattttcatc 3035540
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>ref|XM_638999.1| Dictyostelium discoideum hypothetical protein (DDB0217525), partial
            mRNA
          Length = 5595

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  catcattatcatcactatcat 493
            |||||||||||||||||||||
Sbjct: 2506 catcattatcatcactatcat 2486
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>ref|XM_637656.1| Dictyostelium discoideum hypothetical protein (DDB0217946), partial
            mRNA
          Length = 2715

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  catcattatcatcactatcat 493
            |||||||||||||||||||||
Sbjct: 1495 catcattatcatcactatcat 1475
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>gb|AC022453.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-253G12, complete
             sequence
          Length = 199642

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 242   cacaacaaacatcaacatgaa 262
             |||||||||||||||||||||
Sbjct: 24852 cacaacaaacatcaacatgaa 24832
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>gb|AC145991.2| Pan troglodytes BAC clone RP43-170F9 from 7, complete sequence
          Length = 173879

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 469    cttccatcattatcatcactatcat 493
              ||||||||||||||||||| |||||
Sbjct: 119316 cttccatcattatcatcaccatcat 119292
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>gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4,
              complete sequence
          Length = 302156

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 473    catcattatcatcactatcat 493
              |||||||||||||||||||||
Sbjct: 172558 catcattatcatcactatcat 172538
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>gb|AC018688.9| Homo sapiens BAC clone RP11-462H3 from UL, complete sequence
          Length = 170204

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 472   ccatcattatcatcactatca 492
             |||||||||||||||||||||
Sbjct: 30311 ccatcattatcatcactatca 30291
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>gb|AC117624.10| Mus musculus chromosome 8, clone RP23-114M9, complete sequence
          Length = 207159

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   catcattatcatcactatcat 493
             |||||||||||||||||||||
Sbjct: 19840 catcattatcatcactatcat 19820
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>gb|AE014821.1| Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete
              sequence
          Length = 250823

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    catcattatcatcactatcat 493
              |||||||||||||||||||||
Sbjct: 166885 catcattatcatcactatcat 166905
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>gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete
              sequence
          Length = 250029

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    catcattatcatcactatcat 493
              |||||||||||||||||||||
Sbjct: 117163 catcattatcatcactatcat 117183
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>emb|Y17045.1|PFY17045 Plasmodium falciparum gltS gene
          Length = 9720

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  catcattatcatcactatcat 493
            |||||||||||||||||||||
Sbjct: 5254 catcattatcatcactatcat 5234
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 476     cattatcatcactatcatggt 496
               |||||||||||||||||||||
Sbjct: 3687853 cattatcatcactatcatggt 3687873
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>gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete sequence
          Length = 34907

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 473   catcattatcatcactatcat 493
             |||||||||||||||||||||
Sbjct: 30116 catcattatcatcactatcat 30136
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>gb|AC125394.27| Pan troglodytes clone rp43-45i3, complete sequence
          Length = 214480

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 472   ccatcattatcatcactatca 492
             |||||||||||||||||||||
Sbjct: 15866 ccatcattatcatcactatca 15886
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>gb|AC034187.6| Homo sapiens chromosome 3 clone RP11-202A21 map 3p, complete sequence
          Length = 171716

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 473    catcattatcatcactatcat 493
              |||||||||||||||||||||
Sbjct: 110123 catcattatcatcactatcat 110103
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>dbj|AK012985.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810404M03
           product:unclassifiable, full insert sequence
          Length = 1244

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 473 catcattatcatcactatcat 493
           |||||||||||||||||||||
Sbjct: 307 catcattatcatcactatcat 327
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>ref|NM_001026399.2| Caenorhabditis elegans M01B12.5a (M01B12.5) mRNA, complete cds
          Length = 1587

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  catcattatcatcactatcat 493
            |||||||||||||||||||||
Sbjct: 1309 catcattatcatcactatcat 1289
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>gb|AC012513.12| Homo sapiens BAC clone RP11-566E18 from 2, complete sequence
          Length = 164935

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 387    aaccttcagcgaatatcctca 407
              |||||||||||||||||||||
Sbjct: 124670 aaccttcagcgaatatcctca 124690
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>gb|AC069155.6| Homo sapiens BAC clone RP11-737C8 from 2, complete sequence
          Length = 123153

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 387   aaccttcagcgaatatcctca 407
             |||||||||||||||||||||
Sbjct: 31303 aaccttcagcgaatatcctca 31323
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>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4,
              complete sequence
          Length = 405682

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 473    catcattatcatcactatcat 493
              |||||||||||||||||||||
Sbjct: 343256 catcattatcatcactatcat 343236
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>emb|BX248502.17| Zebrafish DNA sequence from clone DKEY-284M10 in linkage group 8,
             complete sequence
          Length = 215273

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   gcaagctcacaacaaacatca 255
             |||||||||||||||||||||
Sbjct: 88848 gcaagctcacaacaaacatca 88868
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>dbj|BS000178.1| Pan troglodytes chromosome 22 clone:RP43-042C06, map 22, complete
              sequences
          Length = 176580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 315    agggatagttgaaactaacta 335
              |||||||||||||||||||||
Sbjct: 136377 agggatagttgaaactaacta 136357
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>dbj|BS000179.1| Pan troglodytes chromosome 22 clone:RP43-082J09, map 22, complete
             sequences
          Length = 184352

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 315   agggatagttgaaactaacta 335
             |||||||||||||||||||||
Sbjct: 15714 agggatagttgaaactaacta 15694
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>gb|AC008123.9|AC008123 Homo sapiens 2q35 BAC RPCI11-1064L18 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 168601

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 387    aaccttcagcgaatatcctca 407
              |||||||||||||||||||||
Sbjct: 111153 aaccttcagcgaatatcctca 111173
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>dbj|AP001707.1| Homo sapiens genomic DNA, chromosome 21q, section 51/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 315    agggatagttgaaactaacta 335
              |||||||||||||||||||||
Sbjct: 320179 agggatagttgaaactaacta 320159
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>gb|AC119902.12| Mus musculus chromosome 8, clone RP24-235G23, complete sequence
          Length = 146712

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 473   catcattatcatcactatcat 493
             |||||||||||||||||||||
Sbjct: 32919 catcattatcatcactatcat 32939
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>dbj|AP000885.1| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B680H4, SOD-AML
             region, complete sequence
          Length = 86719

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 315   agggatagttgaaactaacta 335
             |||||||||||||||||||||
Sbjct: 27646 agggatagttgaaactaacta 27626
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>ref|XM_631315.1| Dictyostelium discoideum hypothetical protein (DDB0216059), partial
            mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 470  ttccatcattatcatcacta 489
            ||||||||||||||||||||
Sbjct: 4423 ttccatcattatcatcacta 4404
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>gb|DQ128043.1| Triticum aestivum clone A8-1 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 239

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 214 gtgagtactttgaatgtactcgca 237
           |||||||||||||| |||||||||
Sbjct: 24  gtgagtactttgaaagtactcgca 1
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>ref|XM_841366.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4250)
            partial mRNA
          Length = 2370

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  catcattatcatcactatca 492
            ||||||||||||||||||||
Sbjct: 1900 catcattatcatcactatca 1881
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>ref|XM_724636.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00190)
           partial mRNA
          Length = 1479

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 473 catcattatcatcactatca 492
           ||||||||||||||||||||
Sbjct: 253 catcattatcatcactatca 234
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>ref|XM_660159.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.80186)
           partial mRNA
          Length = 975

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 470 ttccatcattatcatcactatcat 493
           ||||||||||||||||| ||||||
Sbjct: 967 ttccatcattatcatcattatcat 944
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>emb|BX936361.4| Human DNA sequence from clone CITF22-91B8 on chromosome 22, complete
             sequence
          Length = 23612

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   ctccactccacagggactctggct 129
             |||||| |||||||||||||||||
Sbjct: 18508 ctccacgccacagggactctggct 18531
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>emb|AL357566.12| Human DNA sequence from clone RP11-513B7 on chromosome 1, complete
            sequence
          Length = 61004

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  catcaacatgaaggcaagac 270
            ||||||||||||||||||||
Sbjct: 6735 catcaacatgaaggcaagac 6716
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>emb|AL158150.14| Human DNA sequence from clone RP11-220B22 on chromosome 9 Contains the
             3' end of a novel gene, a novel gene (FLJ35283) and the 3'
             end of a novel gene similar to mouse RIKEN cDNA 4930500O09
             gene, complete sequence
          Length = 168011

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   catcaacatgaaggcaagac 270
             ||||||||||||||||||||
Sbjct: 76413 catcaacatgaaggcaagac 76394
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>emb|AL158093.8| Human DNA sequence from clone RP5-959I16 on chromosome 20 Contains
             STSs, GSSs and a CpG island, complete sequence
          Length = 112674

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   catcaacatgaaggcaagac 270
             ||||||||||||||||||||
Sbjct: 32886 catcaacatgaaggcaagac 32867
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>emb|AL138812.13| Human DNA sequence from clone RP1-276E15 on chromosome 11p12-14.1
            Contains the start of the gene for DIPB protein, ESTs,
            STSs, GSSs and a CpG island, complete sequence
          Length = 112356

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 470  ttccatcattatcatcacta 489
            ||||||||||||||||||||
Sbjct: 1589 ttccatcattatcatcacta 1570
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>emb|AL034369.1|HSA149D17 Human DNA sequence from clone RP6-149D17 on chromosome Xq22.2-23
             Contains the gene for a novel protein similar to
             pancreatic lipase-related protein 2 (PNLIPRP2), the 5' end
             of the COL4A6 gene for type IV alpha 6 collagen and the 5'
             end of the COL4A5 gene for type IV alpha 5 collagen
             (Alport syndrome), complete sequence
          Length = 122157

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   gatagttgaaactaactata 337
             ||||||||||||||||||||
Sbjct: 24688 gatagttgaaactaactata 24669
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>gb|AC026970.7| Homo sapiens chromosome 11, clone RP11-472K20, complete sequence
          Length = 132987

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   ttccatcattatcatcacta 489
             ||||||||||||||||||||
Sbjct: 23246 ttccatcattatcatcacta 23265
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>gb|AC063965.8| Homo sapiens chromosome 10 clone RP11-380G5, complete sequence
          Length = 201536

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 473  catcattatcatcactatca 492
            ||||||||||||||||||||
Sbjct: 2169 catcattatcatcactatca 2188
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>gb|AC002412.3| Homo sapiens chromosome X clone bWXD105, complete sequence
          Length = 121623

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 470    ttccatcattatcatcacta 489
              ||||||||||||||||||||
Sbjct: 110156 ttccatcattatcatcacta 110175
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>gb|AC018684.3| Homo sapiens BAC clone RP11-424H16 from 10, complete sequence
          Length = 175968

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   acaacaaacatcaacatgaaggca 266
             |||||||||||||| |||||||||
Sbjct: 39054 acaacaaacatcaaaatgaaggca 39031
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>gb|AC090467.6| Homo sapiens chromosome 11, clone RP11-634M17, complete sequence
          Length = 208525

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 470    ttccatcattatcatcacta 489
              ||||||||||||||||||||
Sbjct: 191797 ttccatcattatcatcacta 191816
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>gb|U64835.1| Caenorhabditis elegans cosmid T09D3, complete sequence
          Length = 34598

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  caagctcacaacaaacatca 255
            ||||||||||||||||||||
Sbjct: 8097 caagctcacaacaaacatca 8078
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>gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, complete sequence
          Length = 177509

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   catcattatcatcactatca 492
             ||||||||||||||||||||
Sbjct: 24461 catcattatcatcactatca 24480
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
               complete sequence
          Length = 1466886

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 474     atcattatcatcactatcat 493
               ||||||||||||||||||||
Sbjct: 1014443 atcattatcatcactatcat 1014462
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>gb|AC020895.8| Homo sapiens chromosome 19 clone CTC-312O10, complete sequence
          Length = 139846

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   atcattatcatcactatcat 493
             ||||||||||||||||||||
Sbjct: 48258 atcattatcatcactatcat 48239
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>gb|AC011701.22|AC011701 Homo sapiens 12 BAC RP11-937I21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 205510

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   catcaacatgaaggcaagac 270
             ||||||||||||||||||||
Sbjct: 17211 catcaacatgaaggcaagac 17230
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>gb|AC104685.2| Homo sapiens BAC clone RP11-58H15 from 4, complete sequence
          Length = 135766

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    atcattatcatcactatcat 493
              ||||||||||||||||||||
Sbjct: 112359 atcattatcatcactatcat 112378
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>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence
          Length = 191540

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   ccatcattatcatcactatc 491
             ||||||||||||||||||||
Sbjct: 34257 ccatcattatcatcactatc 34238
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>gb|AF274942.1|AF274942 Homo sapiens PNAS-17 mRNA, complete cds
          Length = 1081

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 470 ttccatcattatcatcacta 489
           ||||||||||||||||||||
Sbjct: 500 ttccatcattatcatcacta 519
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>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   ccatcattatcatcactatc 491
             ||||||||||||||||||||
Sbjct: 65853 ccatcattatcatcactatc 65872
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>gb|DQ217942.1| Homo sapiens EGF-like module containing mucin-like hormone
            receptor-like 1 (EMR1) gene, complete cds
          Length = 55525

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 474  atcattatcatcactatcat 493
            ||||||||||||||||||||
Sbjct: 3386 atcattatcatcactatcat 3367
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>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   ccatcattatcatcactatc 491
             ||||||||||||||||||||
Sbjct: 74934 ccatcattatcatcactatc 74953
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>gb|AC068481.2| Homo sapiens BAC clone CTD-2016F17 from 2, complete sequence
          Length = 155481

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    tccacagggactctggctgg 131
              ||||||||||||||||||||
Sbjct: 113942 tccacagggactctggctgg 113961
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>emb|AL671962.5| Mouse DNA sequence from clone RP23-163A2 on chromosome X, complete
             sequence
          Length = 199534

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   ggcttctctcactgtactct 360
             ||||||||||||||||||||
Sbjct: 89390 ggcttctctcactgtactct 89371
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>ref|NM_209626.1| Eremothecium gossypii ADR177Cp (ADR177C), mRNA
          Length = 2520

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 474  atcattatcatcactatcat 493
            ||||||||||||||||||||
Sbjct: 2133 atcattatcatcactatcat 2114
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>gb|AF067844.1|AF067844 Homo sapiens chromosome 10 clone PTEN, complete sequence
          Length = 218336

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    catcattatcatcactatca 492
              ||||||||||||||||||||
Sbjct: 204546 catcattatcatcactatca 204527
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>gb|AC004070.1|AC004070 Human Chromosome X, complete sequence
          Length = 110192

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   ttccatcattatcatcacta 489
             ||||||||||||||||||||
Sbjct: 57306 ttccatcattatcatcacta 57287
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>emb|BX000989.10| Mouse DNA sequence from clone RP23-33D17 on chromosome 4, complete
            sequence
          Length = 236166

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  caagctcacaacaaacatca 255
            ||||||||||||||||||||
Sbjct: 8308 caagctcacaacaaacatca 8327
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>emb|AL132992.4|CNS01DTZ Human chromosome 14 DNA sequence BAC C-2268P10 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 133186

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   catcaacatgaaggcaagac 270
             ||||||||||||||||||||
Sbjct: 63447 catcaacatgaaggcaagac 63428
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>gb|AC110491.5| Homo sapiens 3 BAC RP11-389G6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189971

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    catcaacatgaaggcaagac 270
              ||||||||||||||||||||
Sbjct: 133290 catcaacatgaaggcaagac 133309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,932,132
Number of Sequences: 3902068
Number of extensions: 3932132
Number of successful extensions: 75827
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75596
Number of HSP's gapped (non-prelim): 232
length of query: 549
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 526
effective length of database: 17,143,297,704
effective search space: 9017374592304
effective search space used: 9017374592304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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