ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte... 32 2.1

>LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 485

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
 Frame = -2

Query: 496 YAENSLMNCSHSMKGEISFPTDVHL----HLYLHG-----CK---EWRRILPNGTYL*LV 353
           + +N  +NCSHS+ G+ +F +  H        L G     C    +W + +P      + 
Sbjct: 309 HPQNGTVNCSHSVVGDFAFKSSCHFTCAEGFTLQGPTQVECTAQGQWTQRVP------VC 362

Query: 352 ESIRCSRGVFSTCINPGCS 296
           E +RCSR   S  +N  CS
Sbjct: 363 EVVRCSRLDVSGKLNMNCS 381


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,729,940
Number of Sequences: 219361
Number of extensions: 2117734
Number of successful extensions: 4960
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4958
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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