ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf151k13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q94EG9:ZIP11_ARATH Zinc transporter 11 precursor - Arabidopsis t... 143 5e-34
2Q9LTH9:ZIP2_ARATH Zinc transporter 2 precursor - Arabidopsis tha... 127 2e-29
3O94421:SNF22_SCHPO SNF2-family ATP-dependent chromatin remodelin... 31 3.1
4Q9CZB6:CSP9_MOUSE Cofactor required for Sp1 transcriptional acti... 30 6.8
5O57781:Y2001_PYRHO Uncharacterized protein PH2001 - Pyrococcus h... 30 8.9
6Q2RMV4:PTH_RHORT Peptidyl-tRNA hydrolase - Rhodospirillum rubrum... 30 8.9
7O14686:MLL2_HUMAN Myeloid/lymphoid or mixed-lineage leukemia pro... 30 8.9

>Q94EG9:ZIP11_ARATH Zinc transporter 11 precursor - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 326
 Score =  143 bits (360), Expect = 5e-34
 Identities = 69/122 (56%), Positives = 83/122 (68%)
 Frame = +2

Query: 50  LWTISLHKVFAAVAMGIALLRMLPNRPLLSCFAYAFAFAVSSPXXXXXXXXXDATAQGAV 229
           LWTI+LHK+FAA+AMGIALLRM+P+RPL S   Y+FAFA+SSP         DAT QG++
Sbjct: 205 LWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSI 264

Query: 230 ADWIFAVSMGLATGIFVYVSVNHLLAKGYKPQSPVAADTPLGRWXXXXXXXXXXXXXXXW 409
           ADWIFA+SM LA G+FVYVSVNHLLAKGY+P   V  D P  ++               W
Sbjct: 265 ADWIFALSMSLACGVFVYVSVNHLLAKGYRPNKKVHVDEPRYKFLAVLFGVVVIAIVMIW 324

Query: 410 DT 415
           DT
Sbjct: 325 DT 326



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>Q9LTH9:ZIP2_ARATH Zinc transporter 2 precursor - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 353

 Score =  127 bits (320), Expect = 2e-29
 Identities = 61/121 (50%), Positives = 78/121 (64%)
 Frame = +2

Query: 50  LWTISLHKVFAAVAMGIALLRMLPNRPLLSCFAYAFAFAVSSPXXXXXXXXXDATAQGAV 229
           LWTISLHKVFAAVAMGIALL+++P RP      Y+FAF +SSP         +AT+QGA 
Sbjct: 233 LWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAG 292

Query: 230 ADWIFAVSMGLATGIFVYVSVNHLLAKGYKPQSPVAADTPLGRWXXXXXXXXXXXXXXXW 409
            DW +A+SMGLA G+FVYV+VNHL++KGYKP+     D P+ ++               W
Sbjct: 293 GDWTYAISMGLACGVFVYVAVNHLISKGYKPREECYFDKPIYKFIAVFLGVALLSVVMIW 352

Query: 410 D 412
           D
Sbjct: 353 D 353



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>O94421:SNF22_SCHPO SNF2-family ATP-dependent chromatin remodeling factor snf22 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 1680

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 279 TKMPVARPMETAKIQSATAPCAVASMTMPMPTPMGLETANAKAYAKQESSGRLGSI-RSS 103
           +K+P +    T    +AT     A    P P P  L+  NAK Y +  S+     + R++
Sbjct: 313 SKLPSSANPNTPFNSTATVDVGAAGSHFPYPQPSNLDAINAKTYFQSSSNSPAPYVYRNN 372

Query: 102 AMPMATA 82
             P AT+
Sbjct: 373 LPPSATS 379



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>Q9CZB6:CSP9_MOUSE Cofactor required for Sp1 transcriptional activation subunit 9 -|
           Mus musculus (Mouse)
          Length = 233

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 121 GQHPQQRDAHGHRREHLVQAD 59
           GQ+ QQR++ GHRR+ +++ D
Sbjct: 199 GQNEQQRESSGHRRDQIIEKD 219



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>O57781:Y2001_PYRHO Uncharacterized protein PH2001 - Pyrococcus horikoshii|
          Length = 147

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -1

Query: 234 SATAPCAVASMTMPMPTPMGLETANAKAYAKQESSGRLGSIRSSAMPMATAANTLC 67
           SATAP A+ ++    P P G  T++   +     SGRL SI        TA +TLC
Sbjct: 71  SATAPSAMTAIFTSFPLPWGSTTSSLNLF-----SGRLRSISL----RFTATSTLC 117



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>Q2RMV4:PTH_RHORT Peptidyl-tRNA hydrolase - Rhodospirillum rubrum (strain ATCC 11170|
           / NCIB 8255)
          Length = 243

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 264 ARPMETAKI---QSATAPCAVASMTMPMPTPMGLETANAKAYAKQESSG 127
           A+P+ TAK    ++ T+  +VA +  P P+P GL  A A+A  ++   G
Sbjct: 193 AKPLATAKPKEGEARTSGGSVAEVGAPPPSPTGLAAALAEALDRKSQKG 241



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>O14686:MLL2_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 2 - Homo sapiens|
           (Human)
          Length = 5262

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 255 METAKIQSATAPCAVASMTMPMPTPMG 175
           MET K+     P    S T P+P+PMG
Sbjct: 798 METEKVSEPECPALEPSATSPLPSPMG 824


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 70,138,067
Number of extensions: 1193271
Number of successful extensions: 3133
Number of sequences better than 10.0: 7
Number of HSP's gapped: 3131
Number of HSP's successfully gapped: 7
Length of query: 203
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 95
Effective length of database: 71,062,579
Effective search space: 6750945005
Effective search space used: 6750945005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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