ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf63e23 |
|---|---|
| Clone Library Name | barley_pub |
>Q6L440:R1A3_SOLDE Putative late blight resistance protein homolog R1A-3 - Solanum| demissum (Wild potato) Length = 775 Score = 44.3 bits (103), Expect = 7e-04 Identities = 18/52 (34%), Positives = 36/52 (69%) Frame = +1 Query: 145 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDMKDQKMTVVGSMDPVDV 300 +KK++L+ D+ D++ A K ++ L G+D++ +DM ++K+TV G M+ +V Sbjct: 711 IKKMILQFDISHDKEIDNAFKRLASLPGVDSISIDMIEKKLTVGGDMNANEV 762
>Q6L3Z4:R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 - Solanum| demissum (Wild potato) Length = 1348 Score = 41.2 bits (95), Expect = 0.006 Identities = 19/52 (36%), Positives = 32/52 (61%) Frame = +1 Query: 145 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDMKDQKMTVVGSMDPVDV 300 +KK+VLK D ++++ KA + L GI ++ VD ++K V+G MD +V Sbjct: 1284 VKKMVLKFDTSNEKEISKAFDRLLSLPGIQSIAVDSNEKKFIVIGDMDADEV 1335
>Q6L403:R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 - Solanum| demissum (Wild potato) Length = 1312 Score = 38.5 bits (88), Expect = 0.037 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 3/61 (4%) Frame = +1 Query: 145 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDMKDQKMTVVGSMDPVD---VVAKLR 315 +KK++ K+D+ ++ + + K ++ L GI ++ D +K+TV G MD + VV+KLR Sbjct: 1248 IKKMMWKVDVGVNKGRLETFKRLAPLPGIKSVAFDFNKKKLTVTGDMDANEVQLVVSKLR 1307 Query: 316 K 318 K Sbjct: 1308 K 1308
>Q6L406:R1B19_SOLDE Putative late blight resistance protein homolog R1B-19 - Solanum| demissum (Wild potato) Length = 1326 Score = 37.0 bits (84), Expect = 0.11 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 145 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDMKDQKMTVVGSMD 288 ++K LKL+L D KA K + GI+++ D K++K+TV G +D Sbjct: 1209 IEKKTLKLNLSHDEDIPKAFKRLFLCPGIESVSTDRKEKKLTVTGDVD 1256
>Q4HWE2:XRN2_GIBZE 5'-3' exoribonuclease 2 - Gibberella zeae (Fusarium graminearum)| Length = 980 Score = 33.5 bits (75), Expect = 1.2 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 126 LFGRRRYEEGGAEAGPARR--QAEAEGAQGRLRPPRHRQYGRGHEGPED 266 +F RR+ +E EA RR Q E G GR P H + GHE PE+ Sbjct: 409 IFKRRKEQEDRREANFKRRKLQNEVNGRGGRQGGPSHPKKINGHENPEN 457
>Q7RX84:CWC22_NEUCR Pre-mRNA-splicing factor cwc-22 - Neurospora crassa| Length = 1010 Score = 33.5 bits (75), Expect = 1.2 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = +3 Query: 54 PTDRARTPSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHR 233 PT R+++PS + + SP + SP R A + P RR + + +G+ PPRHR Sbjct: 86 PTPRSQSPSRR-SVRSPSPRQGSPARRVDRSSSPRARSPPPRRHSRSPPLRGQPPPPRHR 144 Query: 234 QYG 242 G Sbjct: 145 DAG 147
>Q25337:SIR2_LEIMA NAD-dependent deacetylase SIR2 homolog - Leishmania major| Length = 381 Score = 31.2 bits (69), Expect = 5.9 Identities = 23/72 (31%), Positives = 30/72 (41%) Frame = +3 Query: 48 DRPTDRARTPSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPR 227 D P D ++ + SS RSP RR EEGG E G + E E A Sbjct: 254 DDPLDTIHDDAVAKEGRSSSSQSRSPSASARR-EEGGTEDGSSSPNEEVEDASTSSSSDG 312 Query: 228 HRQYGRGHEGPE 263 + QYG + P+ Sbjct: 313 YGQYGDYYAHPD 324
>Q5KFX4:CWC22_CRYNE Pre-mRNA-splicing factor CWC22 - Cryptococcus neoformans| (Filobasidiella neoformans) Length = 831 Score = 31.2 bits (69), Expect = 5.9 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Frame = +3 Query: 24 SSVPAHRVDRPTDRARTPSLHINPQISSPCRRSPLFGRRRY-EEGGAEAGPARRQAEAEG 200 S P R R +D +R+PS + S R RRRY ++ + + P R+ ++ Sbjct: 745 SPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRSPSPPPHRRRYSDD 804 Query: 201 AQGRLRPPRHRQYGRGHEGP 260 ++ PPR R+Y P Sbjct: 805 SRSPSPPPRRRRYSDNSRSP 824
>P03121:VE2_CRPVK Probable regulatory protein E2 - Cottontail rabbit papillomavirus| (strain Kansas) (CRPV) (Papillomavirus sylvilagi) Length = 390 Score = 30.8 bits (68), Expect = 7.7 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Frame = +3 Query: 132 GRRRYEEGGAEAGPA--RRQA---EAEGAQGRLRPPRHRQYGR 245 GRRR G + PA R+QA EA+ A G +RPP GR Sbjct: 239 GRRRSRSPGVQRRPAKQRKQAAPDEADSAAGDIRPPAPEDVGR 281
>Q5R5X0:PININ_PONPY Pinin - Pongo pygmaeus (Orangutan)| Length = 719 Score = 30.8 bits (68), Expect = 7.7 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 117 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 269 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>O35691:PININ_MOUSE Pinin - Mus musculus (Mouse)| Length = 725 Score = 30.8 bits (68), Expect = 7.7 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 117 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 269 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>Q9H307:PININ_HUMAN Pinin - Homo sapiens (Human)| Length = 717 Score = 30.8 bits (68), Expect = 7.7 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 117 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 269 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>P79149:PININ_CANFA Pinin - Canis familiaris (Dog)| Length = 773 Score = 30.8 bits (68), Expect = 7.7 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 117 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 269 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105
>P79122:PININ_BOVIN Pinin - Bos taurus (Bovine)| Length = 703 Score = 30.8 bits (68), Expect = 7.7 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +3 Query: 117 RSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRH-RQYGRGHEGPEDD 269 R L RR + + G GP +Q + EGA RL R R+ R PEDD Sbjct: 56 RGSLLLRRGFSDSGG--GPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDD 105 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 112,973,495 Number of extensions: 2197820 Number of successful extensions: 7225 Number of sequences better than 10.0: 14 Number of HSP's gapped: 7218 Number of HSP's successfully gapped: 14 Length of query: 301 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 188 Effective length of database: 69,691,104 Effective search space: 13101927552 Effective search space used: 13101927552 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
