ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf62c15 |
|---|---|
| Clone Library Name | barley_pub |
>Q99JH1:CI023_MOUSE Alba-like protein C9orf23 homolog - Mus musculus (Mouse)| Length = 163 Score = 79.0 bits (193), Expect = 4e-14 Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Frame = +1 Query: 175 MDRYQRV-------EKPREEAPIGANEIRITAQGRTRNYITYALALLQEEATDEIVIKAM 333 M++Y+R P + P E+R+ + RN + AL L+ +T +V Sbjct: 1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60 Query: 334 GRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWEPL--EEGLNVLETTRHVSLITIT 507 GRA K V+ E++KRR+ GLHQ + + D+W P + GL+ L RHV + + Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120 Query: 508 LSKKELDTSSPGYQLP 555 LS+ LD S GYQ P Sbjct: 121 LSRDPLDPSECGYQPP 136
>Q9BUL9:RPP25_HUMAN Ribonuclease P protein subunit p25 - Homo sapiens (Human)| Length = 199 Score = 75.1 bits (183), Expect = 6e-13 Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Frame = +1 Query: 223 GANEIRITAQGRTRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQ 402 GA +R+ + RN + +A A + + AT IV GRA KTV E+LKRR+AGLHQ Sbjct: 34 GAVHMRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQ 93 Query: 403 NNSIESINITDTWEPLEEG----------LNVLETTRHVSLITITLSKKELDTSSPGYQL 552 + ++ + W+ L G L ++V + I LSK LD PGYQ Sbjct: 94 VTRLRYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQP 153 Query: 553 PIP 561 P P Sbjct: 154 PNP 156
>Q8N5L8:CI023_HUMAN Alba-like protein C9orf23 - Homo sapiens (Human)| Length = 163 Score = 74.7 bits (182), Expect = 7e-13 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Frame = +1 Query: 202 PREEAPIGANEIRITAQGRTRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKR 381 P + P E+R+ + RN + AL L+ + +V GRA K V+ E++KR Sbjct: 17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76 Query: 382 RIAGLHQNNSIESINITDTWEPL--EEGLNVLETTRHVSLITITLSKKELDTSSPGYQLP 555 R+ GLHQ + + D+W P + GL+ L RHV + + LS+ LD + GYQ P Sbjct: 77 RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
>Q2KIR4:CI023_BOVIN Alba-like protein C9orf23 homolog - Bos taurus (Bovine)| Length = 163 Score = 72.0 bits (175), Expect = 5e-12 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Frame = +1 Query: 202 PREEAPIGANEIRITAQGRTRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKR 381 P + P E+R+ A + RN + AL L+ + +V GRA K V+ E++KR Sbjct: 17 PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76 Query: 382 RIAGLHQNNSIESINITDTWEPL--EEGLNVLETTRHVSLITITLSKKELDTSSPGYQLP 555 R+ GL+Q + + D+W P + GL+ L HV + + LS+ LD + GYQ P Sbjct: 77 RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136
>Q5PPN2:RPP25_RAT Ribonuclease P protein subunit p25 - Rattus norvegicus (Rat)| Length = 199 Score = 71.6 bits (174), Expect = 6e-12 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 11/132 (8%) Frame = +1 Query: 223 GANEIRITAQGRTRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQ 402 GA +R+ + RN + +A A + + AT IV GRA KTV E+LKRR+AGLHQ Sbjct: 34 GAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQ 93 Query: 403 NNSIESINITDTWEPLEEG----------LNVLETTRHVSLITITLSKKELDTSSPGYQL 552 + ++ + W+ L G L ++V + I LSK LD GYQ Sbjct: 94 VTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQP 153 Query: 553 P-IPADQVRPPT 585 P + PPT Sbjct: 154 PNLSPGPSSPPT 165
>Q91WE3:RPP25_MOUSE Ribonuclease P protein subunit p25 - Mus musculus (Mouse)| Length = 199 Score = 71.6 bits (174), Expect = 6e-12 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 11/132 (8%) Frame = +1 Query: 223 GANEIRITAQGRTRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQ 402 GA +R+ + RN + +A A + + AT IV GRA KTV E+LKRR+AGLHQ Sbjct: 34 GAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQ 93 Query: 403 NNSIESINITDTWEPLEEG----------LNVLETTRHVSLITITLSKKELDTSSPGYQL 552 + ++ + W+ L G L ++V + I LSK LD GYQ Sbjct: 94 VTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQP 153 Query: 553 P-IPADQVRPPT 585 P + PPT Sbjct: 154 PNLSPGPSSPPT 165
>Q9YAX2:ALBA2_AERPE DNA/RNA-binding protein Alba 2 - Aeropyrum pernix| Length = 102 Score = 51.6 bits (122), Expect = 7e-06 Identities = 37/98 (37%), Positives = 54/98 (55%) Frame = +1 Query: 223 GANEIRITAQGRTRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQ 402 GA E+RI + NY+ L L E+ T+++V+KA GR IN+ V VE++++R A + Sbjct: 5 GAPEVRI-GRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFA---K 60 Query: 403 NNSIESINITDTWEPLEEGLNVLETTRHVSLITITLSK 516 N I+ I I D+ E + TR VS I I L K Sbjct: 61 NIEIKDIKI-DSQEIEVQTPEGQTRTRRVSSIEICLEK 97
>Q9YAW1:ALBA1_AERPE DNA/RNA-binding protein Alba 1 - Aeropyrum pernix| Length = 94 Score = 43.1 bits (100), Expect = 0.002 Identities = 34/86 (39%), Positives = 44/86 (51%) Frame = +1 Query: 259 TRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDT 438 T NY+ AL LL EE E+VIKA GR I V VE+LK +N I+ +NI Sbjct: 18 TINYVMAALKLLNEEGAPEVVIKARGRNICNAVDTVEMLKNLFI---KNLVIKKVNIYS- 73 Query: 439 WEPLEEGLNVLETTRHVSLITITLSK 516 E L+ E + VS I I ++K Sbjct: 74 -ESLDS-----EGKKKVSAIEIVVAK 93
>P60849:ALBA1_SULSO DNA/RNA-binding protein Alba 1 - Sulfolobus solfataricus| Length = 97 Score = 40.0 bits (92), Expect = 0.020 Identities = 31/85 (36%), Positives = 42/85 (49%) Frame = +1 Query: 265 NYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 NY+ AL LL + EIVIKA GRAI+K V VE+++ R L I+ I + Sbjct: 21 NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVV 77 Query: 445 PLEEGLNVLETTRHVSLITITLSKK 519 ++G VS I I + KK Sbjct: 78 TSQDG-----RQSRVSTIEIAIRKK 97
>P60848:ALBA1_SULSH DNA/RNA-binding protein Alba 1 - Sulfolobus shibatae| Length = 97 Score = 40.0 bits (92), Expect = 0.020 Identities = 31/85 (36%), Positives = 42/85 (49%) Frame = +1 Query: 265 NYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 NY+ AL LL + EIVIKA GRAI+K V VE+++ R L I+ I + Sbjct: 21 NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVV 77 Query: 445 PLEEGLNVLETTRHVSLITITLSKK 519 ++G VS I I + KK Sbjct: 78 TSQDG-----RQSRVSTIEIAIRKK 97
>Q971T8:ALBA1_SULTO DNA/RNA-binding protein Alba 1 - Sulfolobus tokodaii| Length = 99 Score = 39.7 bits (91), Expect = 0.026 Identities = 30/85 (35%), Positives = 42/85 (49%) Frame = +1 Query: 265 NYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 NY+ AL LL + EI+IKA GRAI+K V VE+++ R L ++ I I Sbjct: 22 NYVLAALTLLNQ-GVSEIIIKARGRAISKAVDTVEIVRNRF--LPDKIEVKEIRIGSQVV 78 Query: 445 PLEEGLNVLETTRHVSLITITLSKK 519 ++G VS I I + KK Sbjct: 79 TSQDG-----RQSRVSTIEIAIRKK 98
>Q4J973:ALBA_SULAC DNA/RNA-binding protein Alba - Sulfolobus acidocaldarius| Length = 97 Score = 38.1 bits (87), Expect = 0.076 Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Frame = +1 Query: 223 GANEIRITAQGR--TRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGL 396 GA + G+ NY+ AL LL + EI IKA GRAI+K V VE+++ R L Sbjct: 4 GATPSNVVLVGKKPVMNYVLAALTLLNQ-GVSEITIKARGRAISKAVDTVEIVRNRF--L 60 Query: 397 HQNNSIESINITDTWEPLEEGLNVLETTRHVSLITITLSKK 519 ++ I I ++G VS I I + KK Sbjct: 61 PDKIEVKEIRIGSQVVTSQDG-----RQSRVSTIEIGIRKK 96
>Q57665:ALBA_METJA DNA/RNA-binding protein Alba - Methanococcus jannaschii| Length = 87 Score = 38.1 bits (87), Expect = 0.076 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Frame = +1 Query: 271 ITYALALL-QEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWEP 447 + Y +A+L Q + DE++IKA G+AINK V + E+++ R ++ I+ I I Sbjct: 13 MNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFI---KDIKIKKIEIGTDKVK 69 Query: 448 LEEGLNVLETTRHVSLITITLSK 516 +G V +VS I I L+K Sbjct: 70 NPDGREV-----NVSTIEIVLAK 87
>O28323:ALBA2_ARCFU DNA/RNA-binding protein Alba 2 - Archaeoglobus fulgidus| Length = 89 Score = 37.7 bits (86), Expect = 0.100 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +1 Query: 265 NYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRR 384 NY+ L L E A DE+VIKA GRAI++ V + E+++ R Sbjct: 15 NYVLATLTQLNEGA-DEVVIKARGRAISRAVDVAEIVRNR 53
>O29195:ALBA1_ARCFU DNA/RNA-binding protein Alba 1 - Archaeoglobus fulgidus| Length = 89 Score = 37.7 bits (86), Expect = 0.100 Identities = 28/85 (32%), Positives = 44/85 (51%) Frame = +1 Query: 265 NYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 NY+ L AT E+ IKA GRAI++ V + E++++R + ++ I I+ Sbjct: 15 NYVLAVLTQFNSGAT-EVSIKARGRAISRAVDVAEIVRKRFL---PDVDVKDIKISTEQI 70 Query: 445 PLEEGLNVLETTRHVSLITITLSKK 519 E+G T +VS I I L+KK Sbjct: 71 DSEQG------TANVSAIEIILAKK 89
>O74101:ALBA_PYRHO DNA/RNA-binding protein Alba - Pyrococcus horikoshii| Length = 93 Score = 37.0 bits (84), Expect = 0.17 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +1 Query: 271 ITYALALLQE--EATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 + Y LA++ + E E+ IKA GRAI++ V + E+++ R L + ++ I I Sbjct: 15 MNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRF--LKDDVDVKEIKIGTEEL 72 Query: 445 PLEEGLNVLETTRHVSLITITLSKK 519 P +G T + S I I L++K Sbjct: 73 PTADG-----RTTNTSTIEIVLARK 92
>Q9V1N3:ALBA_PYRAB DNA/RNA-binding protein Alba - Pyrococcus abyssi| Length = 93 Score = 37.0 bits (84), Expect = 0.17 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = +1 Query: 271 ITYALALLQE--EATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 + Y LA++ + E E+ IKA GRAI++ V + E+++ R L + ++ I I Sbjct: 15 MNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRF--LKDDVDVKEIKIGTEEL 72 Query: 445 PLEEGLNVLETTRHVSLITITLSKK 519 P +G T + S I I L++K Sbjct: 73 PTADG-----RTTNTSTIEIVLARK 92
>Q8TWE6:ALBA2_METKA DNA/RNA-binding protein Alba 2 - Methanopyrus kandleri| Length = 93 Score = 37.0 bits (84), Expect = 0.17 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Frame = +1 Query: 277 YALALLQE--EATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWEPL 450 Y LA++ + E DE+ + A GRAI++ V + E ++ NN + + + D + Sbjct: 17 YVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIR--------NNVMPEVEVKD----I 64 Query: 451 EEGLNVLET----TRHVSLITITLSK 516 E G +ET T VS I ITL+K Sbjct: 65 EIGTEEIETEEGDTISVSTIAITLAK 90
>Q8TZV1:ALBA_PYRFU DNA/RNA-binding protein Alba - Pyrococcus furiosus| Length = 93 Score = 36.6 bits (83), Expect = 0.22 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Frame = +1 Query: 271 ITYALALLQE--EATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 + Y LA++ + E E+ IKA GRAI++ V + E+++ R L I+ I I Sbjct: 15 MNYVLAVITQFNEGAKEVSIKARGRAISRAVDVAEIVRNRF--LKDTVDIKEIKIGTEEL 72 Query: 445 PLEEGLNVLETTRHVSLITITLSKK 519 P +G T + S I I L +K Sbjct: 73 PTADG-----RTTNTSTIEIVLERK 92
>P60850:ALBA_METMP DNA/RNA-binding protein Alba - Methanococcus maripaludis| Length = 89 Score = 34.7 bits (78), Expect = 0.84 Identities = 23/84 (27%), Positives = 41/84 (48%) Frame = +1 Query: 265 NYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 NY+ + E E+++KA G+AI++ V + E++ +R I+ IN+ Sbjct: 14 NYVLAVITQFNSENAQEVIVKARGKAISRAVDVEEMVTKRFM---PEVKIKEINLGTDHI 70 Query: 445 PLEEGLNVLETTRHVSLITITLSK 516 E+G ++ +VS I I L K Sbjct: 71 QGEDGKSI-----NVSTIEIILFK 89
>Q8TAQ2:SMRC2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily C member 2 - Homo sapiens (Human) Length = 1214 Score = 34.3 bits (77), Expect = 1.1 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = -1 Query: 754 PFLSLCHDIPVDLPC---LHSHHHNLPLHR*TLLSPCPCPGDHGLFHGHLARPLHPD 593 PF SL I ++LP LH HHH+LP TL P +A PLHP+ Sbjct: 1098 PFGSLADSISINLPAPPNLHGHHHHLPFAPGTLPPP--------NLPVSMANPLHPN 1146
>Q8TXF9:ALBA1_METKA DNA/RNA-binding protein Alba 1 - Methanopyrus kandleri| Length = 93 Score = 33.9 bits (76), Expect = 1.4 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Frame = +1 Query: 271 ITYALALLQE--EATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNNSIESINITDTWE 444 + Y LA + + E +E+ IKA GRAI++ V + E+++ R ++ I I Sbjct: 16 MNYVLACITQFNEGANEVRIKARGRAISRAVDVAEIVRNRFM---PEVEVKDIKIGTEEL 72 Query: 445 PLEEGLNVLETTRHVSLITITLSK 516 EEG T +VS I I L K Sbjct: 73 ETEEG-----DTVNVSTIEIVLEK 91
>Q6PDG5:SMRC2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of| chromatin subfamily C member 2 - Mus musculus (Mouse) Length = 1213 Score = 32.3 bits (72), Expect = 4.2 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = -1 Query: 754 PFLSLCHDIPVDLPC---LHSHHHNLPLHR*TLLSPCPCPGDHGLFHGHLARPLHPD 593 PF SL I ++LP LH HHH+LP T+ P +A PLHP+ Sbjct: 1097 PFGSLADSISINLPPPPNLHGHHHHLPFAPGTIPPP--------NLPVSMANPLHPN 1145
>P74762:ALBA2_SULSH DNA/RNA-binding protein Alba 2 - Sulfolobus shibatae| Length = 89 Score = 31.2 bits (69), Expect = 9.3 Identities = 17/67 (25%), Positives = 34/67 (50%) Frame = +1 Query: 229 NEIRITAQGRTRNYITYALALLQEEATDEIVIKAMGRAINKTVAIVELLKRRIAGLHQNN 408 NEI + +++ + L + DE+++K +GR I+K V + LK R+ + Sbjct: 6 NEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGIGREISKAVDVYNSLKDRL-----GD 59 Query: 409 SIESINI 429 I+ +N+ Sbjct: 60 GIQLVNV 66 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 174,271,124 Number of extensions: 3232377 Number of successful extensions: 8502 Number of sequences better than 10.0: 24 Number of HSP's gapped: 8492 Number of HSP's successfully gapped: 24 Length of query: 414 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 298 Effective length of database: 68,868,219 Effective search space: 20522729262 Effective search space used: 20522729262 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
