ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf41j18 |
|---|---|
| Clone Library Name | barley_pub |
>Q9FHW7:SKP1B_ARATH SKP1-like protein 1B - Arabidopsis thaliana (Mouse-ear cress)| Length = 171 Score = 107 bits (266), Expect = 6e-23 Identities = 57/112 (50%), Positives = 65/112 (58%), Gaps = 8/112 (7%) Frame = +2 Query: 167 RMVTLKSSDGXXXXXXXXXXXXSQTIRHLIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 346 R +TLKSSDG SQTI+H+IEDDC DNGIPLPNV SKILSKVIEYC +HV Sbjct: 5 RKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHV 64 Query: 347 Q--------XXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 + LK WD+EF+KVDQ TLFDLIL + Sbjct: 65 EAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAA 116
>Q39255:SKP1A_ARATH SKP1-like protein 1A - Arabidopsis thaliana (Mouse-ear cress)| Length = 160 Score = 102 bits (253), Expect = 2e-21 Identities = 51/104 (49%), Positives = 64/104 (61%) Frame = +2 Query: 167 RMVTLKSSDGXXXXXXXXXXXXSQTIRHLIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 346 + + LKSSDG SQTI H++EDDC DNG+PLPNV SKIL+KVIEYC +HV Sbjct: 4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHV 63 Query: 347 QXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 + LK WDA+F+K+DQATLF+LIL + Sbjct: 64 E--AAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAA 105
>Q71U00:SKP1_XENLA S-phase kinase-associated protein 1A - Xenopus laevis (African| clawed frog) Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>Q6PEC4:SKP1_RAT S-phase kinase-associated protein 1A - Rattus norvegicus (Rat)| Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>Q5R512:SKP1_PONPY S-phase kinase-associated protein 1A - Pongo pygmaeus (Orangutan)| Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>Q9WTX5:SKP1_MOUSE S-phase kinase-associated protein 1A - Mus musculus (Mouse)| Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>Q4R5B9:SKP1_MACFA S-phase kinase-associated protein 1A - Macaca fascicularis (Crab| eating macaque) (Cynomolgus monkey) Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>P63208:SKP1_HUMAN S-phase kinase-associated protein 1A - Homo sapiens (Human)| Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>Q5ZKF5:SKP1_CHICK S-phase kinase-associated protein 1A - Gallus gallus (Chicken)| Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>P63209:SKP1_CAVPO S-phase kinase-associated protein 1A - Cavia porcellus (Guinea pig)| Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>Q3ZCF3:SKP1_BOVIN S-phase kinase-associated protein 1A - Bos taurus (Bovine)| Length = 163 Score = 61.6 bits (148), Expect = 3e-09 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIED-----DCADNGIPLPNVNSKILSKVIEYCN 337 + L+SSDG S TI+ ++ED + D+ +PLPNVN+ IL KVI++C Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63 Query: 338 KHVQXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 H + WD EF+KVDQ TLF+LIL + Sbjct: 64 HH---KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAA 107
>P52285:FP21_DICDI Glycoprotein FP21 precursor - Dictyostelium discoideum (Slime mold)| Length = 162 Score = 59.3 bits (142), Expect = 1e-08 Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Frame = +2 Query: 170 MVTLKSSDGXXXXXXXXXXXXSQTIRHLIED-DCADNGIPLPNVNSKILSKVIEYCNKHV 346 +V L+SSD S TI+++IED +D+ IPLPNV S IL KV++YC H Sbjct: 3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHH 62 Query: 347 QXXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 Q + +D +F KVDQ TLF+LIL + Sbjct: 63 Q---HPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAA 103
>Q9Y709:SKP1_SCHPO Suppressor of kinetochore protein 1 - Schizosaccharomyces pombe| (Fission yeast) Length = 161 Score = 50.8 bits (120), Expect = 5e-06 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Frame = +2 Query: 173 VTLKSSDGXXXXXXXXXXXXSQTIRHLIEDDCADN-GIPLPNVNSKILSKVIEYCNKHVQ 349 + L SSD S I++++ED N IPLPNV+S +L KV+E+C H + Sbjct: 4 IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHH-K 62 Query: 350 XXXXXXXXXXXXXXXXXXXXLKNWDAEFVKVDQATLFDLILTS 478 + WD +F+ VDQ LF+++L S Sbjct: 63 NDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLAS 105
>P52286:SKP1_YEAST Suppressor of kinetochore protein 1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 194 Score = 43.5 bits (101), Expect = 8e-04 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +2 Query: 257 EDDCADNGI--PLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXXLKNWDAE 430 +DD D+ I P+PNV S +L KVIE+ H + +WD E Sbjct: 67 DDDEDDDEIVMPVPNVRSSVLQKVIEWAEHH----RDSNFPDEDDDDSRKSAPVDSWDRE 122 Query: 431 FVKVDQATLFDLILTS 478 F+KVDQ L+++IL + Sbjct: 123 FLKVDQEMLYEIILAA 138
>Q86UU1:PHLB1_HUMAN Pleckstrin homology-like domain family B member 1 - Homo sapiens| (Human) Length = 1377 Score = 31.6 bits (70), Expect = 3.3 Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 8/115 (6%) Frame = +1 Query: 244 PPPDRGRLRRQRHPAPQRQLQDPLQGHRVLQQARPGQAXXXXXSWCVRCAAPRR*PQELG 423 PP RR P P R DP V + RP + W A+P LG Sbjct: 458 PPLSPSLSRRALSPLPTRTTPDPKLNREVAESPRPRR-------WAAHGASPEDFSLTLG 510 Query: 424 RRVRQGRPSHP-----LRPHPDIV---IADAYSCQCVLRSGARHLNPCMSSQLIS 564 R R+ R P L PH ++ AYS L + +PC+ +L S Sbjct: 511 ARGRRTRSPSPTLGESLAPHKGSFSGRLSPAYSLGS-LTGASPCQSPCVQRKLSS 564 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 86,645,429 Number of extensions: 1543668 Number of successful extensions: 3612 Number of sequences better than 10.0: 15 Number of HSP's gapped: 3581 Number of HSP's successfully gapped: 15 Length of query: 244 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 134 Effective length of database: 70,513,989 Effective search space: 9448874526 Effective search space used: 9448874526 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
