ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf5f18 |
|---|---|
| Clone Library Name | barley_pub |
>AK120562:Os03g0823400 | Length = 127 Score = 86.7 bits (213), Expect = 1e-17 Identities = 36/63 (57%), Positives = 41/63 (65%), Gaps = 1/63 (1%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVG-GRDSFQCKDLITNFCNTRCT 330 CCD CG CT+S PPQC+CMD P GC PACK C KS++ +QC D I N C RCT Sbjct: 64 CCDNCGGCTKSIPPQCQCMDARPAGCHPACKSCVKSSLSVSPPVYQCMDRIPNLCQRRCT 123 Query: 331 KAA 339 AA Sbjct: 124 AAA 126
>U76004:Os01g0124400 | Length = 248 Score = 44.3 bits (103), Expect = 6e-05 Identities = 23/62 (37%), Positives = 26/62 (41%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNTRCTK 333 CCDK C + PP CRCMD C ACK C + + CKD T C Sbjct: 187 CCDKA-FCNKMNPPTCRCMD-EVKECADACKDCQRVESSEPPRYVCKDRFTGHPGPVCKP 244 Query: 334 AA 339 A Sbjct: 245 RA 246 Score = 35.4 bits (80), Expect = 0.027 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 12/73 (16%) Frame = +1 Query: 154 CCDKCG-ICTRSFPPQCRCMD-VSPTGCIPACKKCAKSTVGGRDSFQCKDLITN-----F 312 CCD + T+ PPQ RC D + P+ C ACK C ++ C+D+ F Sbjct: 119 CCDNIKRLPTKPDPPQWRCNDELEPSQCTAACKSCREAPGPFPGKLICEDIYWGADPGPF 178 Query: 313 CNTR-----CTKA 336 C R C KA Sbjct: 179 CTPRPWGDCCDKA 191
>U57640:Os01g0124400 | Length = 182 Score = 44.3 bits (103), Expect = 6e-05 Identities = 23/62 (37%), Positives = 26/62 (41%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNTRCTK 333 CCDK C + PP CRCMD C ACK C + + CKD T C Sbjct: 121 CCDKA-FCNKMNPPTCRCMD-EVKECADACKDCQRVESSEPPRYVCKDRFTGHPGPVCKP 178 Query: 334 AA 339 A Sbjct: 179 RA 180
>AB098712:Os01g0124400 | Length = 254 Score = 44.3 bits (103), Expect = 6e-05 Identities = 23/62 (37%), Positives = 26/62 (41%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNTRCTK 333 CCDK C + PP CRCMD C ACK C + + CKD T C Sbjct: 193 CCDKA-FCNKMNPPTCRCMD-EVKECADACKDCQRVESSEPPRYVCKDRFTGHPGPVCKP 250 Query: 334 AA 339 A Sbjct: 251 RA 252 Score = 35.4 bits (80), Expect = 0.027 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 12/73 (16%) Frame = +1 Query: 154 CCDKCG-ICTRSFPPQCRCMD-VSPTGCIPACKKCAKSTVGGRDSFQCKDLITN-----F 312 CCD + T+ PPQ RC D + P+ C ACK C ++ C+D+ F Sbjct: 125 CCDNIKRLPTKPDPPQWRCNDELEPSQCTAACKSCREAPGPFPGKLICEDIYWGADPGPF 184 Query: 313 CNTR-----CTKA 336 C R C KA Sbjct: 185 CTPRPWGDCCDKA 197
>AK104671:Os01g0123900 | Length = 193 Score = 43.5 bits (101), Expect = 1e-04 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAK-STVGGRDSFQCKDLITNFCNTRCT 330 CCD +CT+S PP C C D C AC +C + R F C+D T RCT Sbjct: 131 CCD-IAVCTKSLPPICHCSD-EVESCAAACGQCEMVDSWSWRPLFVCRDSFTGDPGPRCT 188
>AK104410:Os01g0123900 | Length = 193 Score = 43.5 bits (101), Expect = 1e-04 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAK-STVGGRDSFQCKDLITNFCNTRCT 330 CCD +CT+S PP C C D C AC +C + R F C+D T RCT Sbjct: 131 CCD-IAVCTKSLPPICHCSD-EVESCAAACGQCEMVDSWSWRPLFVCRDSFTGDPGPRCT 188
>AK070467:Os01g0123900 | Length = 193 Score = 43.5 bits (101), Expect = 1e-04 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAK-STVGGRDSFQCKDLITNFCNTRCT 330 CCD +CT+S PP C C D C AC +C + R F C+D T RCT Sbjct: 131 CCD-IAVCTKSLPPICHCSD-EVESCAAACGQCEMVDSWSWRPLFVCRDSFTGDPGPRCT 188
>AK065846:Os01g0124000 | Length = 186 Score = 41.2 bits (95), Expect = 5e-04 Identities = 18/33 (54%), Positives = 19/33 (57%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKC 252 CCDK CTRS PP C C D C ACK+C Sbjct: 129 CCDKA-FCTRSLPPICHCAD-EVASCAAACKEC 159
>AK099279:Os01g0124400 | Length = 185 Score = 40.8 bits (94), Expect = 7e-04 Identities = 21/58 (36%), Positives = 25/58 (43%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNTRC 327 CC CTRS PP CRC D C ACK C + + C+D T +C Sbjct: 124 CCTNT-TCTRSIPPICRCND-KVKKCAAACKDCKRVKSSKPPRYVCQDQFTGQPGPKC 179
>AK064050:Os01g0124400 | Length = 185 Score = 40.8 bits (94), Expect = 7e-04 Identities = 21/58 (36%), Positives = 25/58 (43%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNTRC 327 CC CTRS PP CRC D C ACK C + + C+D T +C Sbjct: 124 CCTNT-TCTRSIPPICRCND-KVKKCAAACKDCKRVKSSKPPRYVCQDQFTGQPGPKC 179
>AK062394:Os01g0124100 | Length = 259 Score = 40.8 bits (94), Expect = 7e-04 Identities = 26/62 (41%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKC---AKSTVGGRDSFQCKDLITNFCNTR 324 CCD CT+S PP C C D C ACK C A S+ R F CKD T + Sbjct: 197 CCDNT-TCTKSIPPICSCGD-KVAACDGACKDCQPVASSSEPPR--FVCKDQFTGQPGPK 252 Query: 325 CT 330 CT Sbjct: 253 CT 254 Score = 30.0 bits (66), Expect = 1.2 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 17/78 (21%) Frame = +1 Query: 154 CCDKCG-ICTRSFPPQCRCMD-VSPTGCIPACKKCAKSTVGGRDSFQCKDLITN-----F 312 CCD + R PP RC D + P C ACK C ++ C D+ F Sbjct: 129 CCDNIRRLPPRIHPPFWRCDDELKPGQCFAACKACREAPGPFPGPLICDDVYWGADPGPF 188 Query: 313 C----------NTRCTKA 336 C NT CTK+ Sbjct: 189 CTPRPWGDCCDNTTCTKS 206
>AK105455:Os01g0127600 | Length = 179 Score = 40.4 bits (93), Expect = 9e-04 Identities = 21/58 (36%), Positives = 25/58 (43%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNTRC 327 CCD +CTRS PP C C D C C KC + F+C D F +C Sbjct: 120 CCDDA-VCTRSMPPTCSCQD-KVKSCSGGCGKCVQ-VESQPPRFRCLDRYHGFPGPKC 174
>AK102138:Os01g0127600 | Length = 179 Score = 40.4 bits (93), Expect = 9e-04 Identities = 21/58 (36%), Positives = 25/58 (43%) Frame = +1 Query: 154 CCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNTRC 327 CCD +CTRS PP C C D C C KC + F+C D F +C Sbjct: 120 CCDDA-VCTRSMPPTCSCQD-KVKSCSGGCGKCVQ-VESQPPRFRCLDRYHGFPGPKC 174
>AK059239:Os01g0132000 | Length = 100 Score = 35.4 bits (80), Expect = 0.027 Identities = 20/62 (32%), Positives = 22/62 (35%) Frame = +1 Query: 142 GTTLCCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNT 321 G CC C SF C D+ C P CKKCA F+C D C Sbjct: 41 GQLKCCSNCNF---SFSGLYTCDDIVKK-CDPVCKKCAVVKTYPVKMFKCTDTFLGMCGP 96 Query: 322 RC 327 C Sbjct: 97 PC 98
>AB059238:Os01g0132000 | Length = 100 Score = 35.4 bits (80), Expect = 0.027 Identities = 20/62 (32%), Positives = 22/62 (35%) Frame = +1 Query: 142 GTTLCCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNT 321 G CC C SF C D+ C P CKKCA F+C D C Sbjct: 41 GQLKCCSNCNF---SFSGLYTCDDIVKK-CDPVCKKCAVVKTYPVKMFKCTDTFLGMCGP 96 Query: 322 RC 327 C Sbjct: 97 PC 98
>Os01g0131900:Os01g0131900 | Length = 101 Score = 35.0 bits (79), Expect = 0.036 Identities = 20/62 (32%), Positives = 21/62 (33%) Frame = +1 Query: 142 GTTLCCDKCGICTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFCNT 321 G CC C SF C DV C P CK CA F+C D C Sbjct: 42 GKLKCCSNCNF---SFSGLYTCEDVVKK-CDPVCKSCAVVKTHPVKKFKCTDTFLGMCGP 97 Query: 322 RC 327 C Sbjct: 98 PC 99
>AK101247:Os09g0441900 | Length = 444 Score = 30.0 bits (66), Expect = 1.2 Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 3/73 (4%) Frame = +1 Query: 157 CDKCGICTRSFPPQCRCMDVSPTGCI---PACKKCAKSTVGGRDSFQCKDLITNFCNTRC 327 C CG C P C C C P C C+ + CK C +C Sbjct: 276 CPSCG-CNGCGLPSCGCNGCGSCSCAQCKPDCGSCSTNCCS------CKPSCNGCCGEQC 328 Query: 328 TKAA*LYWTSCRR 366 + A + SC R Sbjct: 329 CRCADCFSCSCPR 341 Score = 28.1 bits (61), Expect = 4.3 Identities = 14/46 (30%), Positives = 19/46 (41%) Frame = -3 Query: 328 CSGCCRSW**DPCTGSCRGRRRWTWRTSCMPGCNRSERRPCICTAA 191 C+GCC S PCT C SC C + + C C ++ Sbjct: 353 CAGCCSSLCKCPCTTQC---------FSCQSSCCKRQPSCCKCQSS 389
>AK106893:Os08g0199100 | Length = 284 Score = 29.3 bits (64), Expect = 1.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 292 CTGSCRGRRRWTWRTSCMPGCNRS 221 CT SCR RR W C P C+R+ Sbjct: 150 CTTSCRSSRRGRW---CAPACSRA 170
>AK119210:Os02g0532300 | Length = 372 Score = 28.9 bits (63), Expect = 2.5 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -2 Query: 227 PVGETSMHLHCGGKDLVQMPHLSQHSV--VPWL 135 P GE ++HL G +DL+ LS+H +PW+ Sbjct: 309 PAGEAAVHLWHGAEDLIVPVQLSRHIAQRLPWV 341
>AK104452:Os02g0532300 | Length = 372 Score = 28.9 bits (63), Expect = 2.5 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -2 Query: 227 PVGETSMHLHCGGKDLVQMPHLSQHSV--VPWL 135 P GE ++HL G +DL+ LS+H +PW+ Sbjct: 309 PAGEAAVHLWHGAEDLIVPVQLSRHIAQRLPWV 341
>AK099017:Os02g0532300 | Length = 372 Score = 28.9 bits (63), Expect = 2.5 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -2 Query: 227 PVGETSMHLHCGGKDLVQMPHLSQHSV--VPWL 135 P GE ++HL G +DL+ LS+H +PW+ Sbjct: 309 PAGEAAVHLWHGAEDLIVPVQLSRHIAQRLPWV 341
>AK061527:Os02g0532300 | Length = 372 Score = 28.9 bits (63), Expect = 2.5 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -2 Query: 227 PVGETSMHLHCGGKDLVQMPHLSQHSV--VPWL 135 P GE ++HL G +DL+ LS+H +PW+ Sbjct: 309 PAGEAAVHLWHGAEDLIVPVQLSRHIAQRLPWV 341
>AK108563:Os02g0629900 | Length = 115 Score = 28.1 bits (61), Expect = 4.3 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 8/45 (17%) Frame = -3 Query: 295 PCTGSCRGR-RRW-TWRTSCMPGCNRS------ERRPCICTAAGK 185 P +G RGR W + RTS PGC RS RR C +A G+ Sbjct: 63 PGSGGARGRPAAWVSRRTSWWPGCRRSSSTSAPRRRRCYPSAGGR 107
>AK072143:Os06g0509100 | Length = 188 Score = 28.1 bits (61), Expect = 4.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 292 CTGSCRGRRRWTWRTSCMPGCNRSERRP 209 CT SC +WR +C PGC+ + P Sbjct: 5 CTPSC------SWRPTCSPGCSTTSATP 26
>AK122121:Os01g0957100 | Length = 923 Score = 27.7 bits (60), Expect = 5.7 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 Query: 374 MPISLCFSSFFSGFPVDSASLSG*MPRRNDSCSSFLLVS 490 MP LC + + +D SL+G +P +CSS L+S Sbjct: 380 MPSDLCEAGSLAVLQLDGNSLAGPIPDNIGNCSSLYLLS 418
>Os10g0117000:Os10g0117000 | Length = 339 Score = 27.3 bits (59), Expect = 7.4 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Frame = -2 Query: 446 STQIKMQSQPESLKRNWKSTS*WALLGRRQEVQYNHAALVQRVLQKLVMRSLHWKLSRPP 267 S ++ S+P SL S WA G R +V Y +A V + ++ L+R P Sbjct: 195 SMGVQFPSKPMSLYATIWDGSSWATSGGRYKVNYKYAPFVAEFSELMLHGCAMDTLTRAP 254 Query: 266 --TVDLAHFLHA 237 T D+A+ +A Sbjct: 255 MCTPDIANIHNA 266
>AK122179:Os04g0484900 | Length = 573 Score = 27.3 bits (59), Expect = 7.4 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 6/44 (13%) Frame = +3 Query: 165 VRHLHQVFPAAVQMHGRLSDRL-HPG-----MQEVRQVHRRRPR 278 VR LH V+ AV +HGR +D+L H G M+E ++ R+ R Sbjct: 498 VRELH-VYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARKEHR 540
>AK058424:Os06g0294600 | Length = 213 Score = 27.3 bits (59), Expect = 7.4 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +3 Query: 207 HGRLSDRLHPGMQEVRQVHRRRPRQ 281 HG DRLHPG + R V RRR R+ Sbjct: 66 HGAPRDRLHPG-RPARGVRRRRRRR 89
>Os01g0738500:Os01g0738500 | Length = 761 Score = 27.3 bits (59), Expect = 7.5 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = -1 Query: 579 FFFFFGSESILHSIPCIHEDFAEKNMLFISDTRRNDEQE 463 F F G + +LH + I E+ AE+N++ ++ E+E Sbjct: 568 FEFLHGFQDVLHDLGEIKENEAEQNIVHADQEAQHQEEE 606
>U77657:Os03g0661600 | Length = 232 Score = 26.9 bits (58), Expect = 9.7 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Frame = +1 Query: 142 GTTLCCDKCGI-CTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFC 315 G+ C K G C + PQC +P GC AC TV +D + C N C Sbjct: 138 GSGAGCPKGGPRCATAITPQCPSELRAPGGCNNAC------TVFRQDRYCCTGSAANSC 190
>AK058637:Os03g0661600 | Length = 232 Score = 26.9 bits (58), Expect = 9.7 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Frame = +1 Query: 142 GTTLCCDKCGI-CTRSFPPQCRCMDVSPTGCIPACKKCAKSTVGGRDSFQCKDLITNFC 315 G+ C K G C + PQC +P GC AC TV +D + C N C Sbjct: 138 GSGAGCPKGGPRCATAITPQCPSELRAPGGCNNAC------TVFRQDRYCCTGSAANSC 190 Database: orf_amino.fa.out Posted date: Jul 26, 2007 11:37 AM Number of letters in database: 15,399,855 Number of sequences in database: 40,041 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 40041 Number of Hits to DB: 14,363,276 Number of extensions: 309412 Number of successful extensions: 1042 Number of sequences better than 10.0: 31 Number of HSP's gapped: 1035 Number of HSP's successfully gapped: 35 Length of query: 193 Length of database: 15,399,855 Length adjustment: 95 Effective length of query: 98 Effective length of database: 11,595,960 Effective search space: 1136404080 Effective search space used: 1136404080 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
