ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf5f18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ272520.1| Streptomyces aculeolatus A gene locus, complete sequence Length = 50114 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 75 ggcgctgctcgccgccctggccgtcgtcgccg 106 ||||||||||| |||||||||||||| ||||| Sbjct: 48133 ggcgctgctcgacgccctggccgtcgccgccg 48164
>gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome Length = 2443540 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 84 cgccgccctggccgtcgtcgccgtcc 109 |||||||||||||| ||||||||||| Sbjct: 1756536 cgccgccctggccggcgtcgccgtcc 1756511
>emb|CT830759.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA046N22, full insert sequence Length = 777 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 204 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 263 Query: 213 cg 214 || Sbjct: 264 cg 265
>dbj|AK242402.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J080068M09, full insert sequence Length = 3143 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Minus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 1455 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 1396 Query: 213 cg 214 || Sbjct: 1395 cg 1394
>ref|NM_001058277.1| Oryza sativa (japonica cultivar-group) Os03g0823400 (Os03g0823400) mRNA, complete cds Length = 874 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 334 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 393 Query: 213 cg 214 || Sbjct: 394 cg 395
>gb|AY553363.1| Elaeis oleifera Bowman-Birk type proteinase inhibitor-like mRNA, partial sequence Length = 448 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtct 186 ||||||| |||||||||| |||||||||||||| Sbjct: 21 gtgctgcaacaagtgcggtgtctgcaccaggtct 54
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 ccgccctggccgtcgtcgccgt 107 |||||||||||||||||||||| Sbjct: 2737001 ccgccctggccgtcgtcgccgt 2736980
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 ctgctcgccgccctggccgtcg 100 |||||||||||||||||||||| Sbjct: 2659549 ctgctcgccgccctggccgtcg 2659528 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cgccgccctggccgtcgtcg 103 |||||||||||||||||||| Sbjct: 4314871 cgccgccctggccgtcgtcg 4314890
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Minus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 34354235 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 34354176 Query: 213 cg 214 || Sbjct: 34354175 cg 34354174
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccgtcctg 111 ||||||||||| ||||||| |||||||||| Sbjct: 541091 ctcgccgccctcgccgtcgccgccgtcctg 541120 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 gcgctgctcgccgccctggccg 97 |||||||||||||||||||||| Sbjct: 1719938 gcgctgctcgccgccctggccg 1719959
>gb|AF283254.1|AF283254 Mus musculus gap junction protein connexin45 (Gja6) gene, partial cds Length = 4591 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 400 tttcttttcaggctttccggtt 421 |||||||||||||||||||||| Sbjct: 3482 tttcttttcaggctttccggtt 3503
>gb|AC007403.4| Homo sapiens BAC clone RP11-547F18 from 2, complete sequence Length = 176321 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 530 atgcacggaatggaatgcaatatgga 555 ||||||| |||||||||||||||||| Sbjct: 143344 atgcacgcaatggaatgcaatatgga 143319
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 71235 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 71294 Query: 213 cg 214 || Sbjct: 71295 cg 71296
>dbj|AK120562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132J02, full insert sequence Length = 877 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Plus Query: 153 gtgctgcgacaagtgcggcatctgcaccaggtctttcccgccgcagtgcagatgcatgga 212 |||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||| Sbjct: 337 gtgctgcgacaactgcggcgggtgcaccaagtcgatcccgccgcagtgccagtgcatgga 396 Query: 213 cg 214 || Sbjct: 397 cg 398
>ref|XR_026966.1| PREDICTED: Gallus gallus similar to ligase I (LOC430516), mRNA Length = 3107 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 cctggcagcagctctgcccct 128 ||||||||||||||||||||| Sbjct: 61 cctggcagcagctctgcccct 81
>emb|CT833079.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204C02, full insert sequence Length = 2752 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 475 ctcgccgccatggccgtcgtcgccg 499
>emb|CT833078.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA202C07, full insert sequence Length = 2982 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 704 ctcgccgccatggccgtcgtcgccg 728
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 aggcgctgctcgccgccctgg 94 ||||||||||||||||||||| Sbjct: 2792592 aggcgctgctcgccgccctgg 2792612 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ggcgctgctcgccgccctggccgt 98 |||||||||||||||| ||||||| Sbjct: 2836237 ggcgctgctcgccgccgtggccgt 2836214
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 cgccgccctggccgtcgtcgc 104 ||||||||||||||||||||| Sbjct: 2127044 cgccgccctggccgtcgtcgc 2127024
>emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841 Length = 5057142 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 tcgccgccctggccgtcgtcg 103 ||||||||||||||||||||| Sbjct: 1190005 tcgccgccctggccgtcgtcg 1190025
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccgtcct 110 ||||||||||| |||||| |||||||||| Sbjct: 333220 ctcgccgccctcgccgtcctcgccgtcct 333248 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 75 ggcgctgctcgccgccctggccgtcgtcg 103 ||||||||||||||| ||||||| ||||| Sbjct: 2261022 ggcgctgctcgccgcgctggccgacgtcg 2261050
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 aggcgctgctcgccgccctgg 94 ||||||||||||||||||||| Sbjct: 2834754 aggcgctgctcgccgccctgg 2834734 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ggcgctgctcgccgccctggccgt 98 |||||||||||||||| ||||||| Sbjct: 2791135 ggcgctgctcgccgccgtggccgt 2791158
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 tggccgtcgtcgccgtcctgg 112 ||||||||||||||||||||| Sbjct: 2453981 tggccgtcgtcgccgtcctgg 2453961 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ggcgctgctcgccgccctgg 94 |||||||||||||||||||| Sbjct: 2305108 ggcgctgctcgccgccctgg 2305127 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cccaggcgctgctcgccgcc 90 |||||||||||||||||||| Sbjct: 3509667 cccaggcgctgctcgccgcc 3509648
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 tgggtagatgcctagaagaaa 459 ||||||||||||||||||||| Sbjct: 27352458 tgggtagatgcctagaagaaa 27352478
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 5630400 ctcgccgccatggccgtcgtcgccg 5630376
>gb|AC107364.1| Danio rerio, clone -10O19, complete sequence Length = 96880 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 tgcttttccagtttcttttca 409 ||||||||||||||||||||| Sbjct: 83479 tgcttttccagtttcttttca 83459
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ctggccgtcgtcgccgtcctg 111 ||||||||||||||||||||| Sbjct: 1831773 ctggccgtcgtcgccgtcctg 1831753
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtc 102 ||||||||||||||||||||| Sbjct: 2907 ctcgccgccctggccgtcgtc 2927
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 ccgccctggccgtcgtcgccg 106 ||||||||||||||||||||| Sbjct: 266362 ccgccctggccgtcgtcgccg 266382
>emb|AL645795.3| Zebrafish DNA sequence from clone BUSM1-31B14 in linkage group 6 Contains the hoxa10b, hoxa9b and hoxa2b genes for homeo box proteins, a novel gene for a protein similar to SRC-associated adaptor protein and a CpG island, complete sequence Length = 78000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 tgcttttccagtttcttttca 409 ||||||||||||||||||||| Sbjct: 65309 tgcttttccagtttcttttca 65329
>gb|AY026914.1| Pseudomonas putida strain P111 czrBA operon, partial sequence; ben operon and ant operon, complete sequence; and catRBCA operon, partial sequence; and unknown gene Length = 15769 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 aggcgctgctcgccgccctgg 94 ||||||||||||||||||||| Sbjct: 6442 aggcgctgctcgccgccctgg 6462
>gb|AY866383.1| Pectobacterium carotovorum subsp. carotovorum CasF (casF) and CasB (casB) genes, complete cds Length = 4873 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 299 tcatcaccaacttctgcaacacccgctgc 327 |||||| |||||||||| ||||||||||| Sbjct: 2029 tcatcatcaacttctgcgacacccgctgc 2057
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 58136 ctcgccgccatggccgtcgtcgccg 58112
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 tgggtagatgcctagaagaaa 459 ||||||||||||||||||||| Sbjct: 53985 tgggtagatgcctagaagaaa 54005
>dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J06, full insert sequence Length = 6528 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 700 ctcgccgccatggccgtcgtcgccg 724
>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full insert sequence Length = 2981 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgccg 106 ||||||||| ||||||||||||||| Sbjct: 703 ctcgccgccatggccgtcgtcgccg 727
>gb|CP000350.1| Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1, complete sequence Length = 3576473 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 tcttttcaggctttccggtt 421 |||||||||||||||||||| Sbjct: 1758649 tcttttcaggctttccggtt 1758630
>gb|CP000348.1| Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence Length = 3614446 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 tcttttcaggctttccggtt 421 |||||||||||||||||||| Sbjct: 2000189 tcttttcaggctttccggtt 2000170
>gb|CP000394.1| Granulibacter bethesdensis CGDNIH1, complete genome Length = 2708355 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 ctcgccgccctggccgtcgtcgcc 105 |||||||||||| ||||||||||| Sbjct: 185242 ctcgccgccctgaccgtcgtcgcc 185219
>emb|CT868720.9| Mouse DNA sequence from clone RP23-348G7 on chromosome 13, complete sequence Length = 148101 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cctggcagcagctctgcccc 127 |||||||||||||||||||| Sbjct: 69872 cctggcagcagctctgcccc 69853
>gb|AC124222.8| Rattus norvegicus BAC CH230-453H12 () complete sequence Length = 171087 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 99702 tagatgcctagaagaaatga 99683
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome Length = 4133097 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 gctcgccgccctggccgtcg 100 |||||||||||||||||||| Sbjct: 4014892 gctcgccgccctggccgtcg 4014873
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gctgctcgccgccctggccg 97 |||||||||||||||||||| Sbjct: 1175487 gctgctcgccgccctggccg 1175506
>gb|AC160121.2| Mus musculus BAC clone RP23-402P14 from chromosome 13, complete sequence Length = 183152 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctggcagcagctctgcccc 127 |||||||||||||||||||| Sbjct: 174586 cctggcagcagctctgcccc 174605
>gb|AY320035.2| Bacteriophage VWB, complete genome Length = 49220 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgcc 105 ||||||||||||||||| |||||| Sbjct: 19068 ctcgccgccctggccgtggtcgcc 19091
>gb|AC130138.9| Rattus norvegicus 2 BAC CH230-204B23 (Children's Hospital Oakland Research Institute) complete sequence Length = 189178 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 caaaatcttcatgtatgcac 535 |||||||||||||||||||| Sbjct: 54835 caaaatcttcatgtatgcac 54854
>gb|AC087067.3| Rattus norvegicus strain Brown Norway clone RP31-40H10, complete sequence Length = 178746 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 104290 tagatgcctagaagaaatga 104271
>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland Research Institute) complete sequence Length = 170859 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 29487 tagatgcctagaagaaatga 29506
>gb|AC097257.7| Rattus norvegicus X BAC CH230-180I13 (Children's Hospital Oakland Research Institute) complete sequence Length = 196137 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 180336 tagatgcctagaagaaatga 180355
>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland Research Institute) complete sequence Length = 211584 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tagatgcctagaagaaatga 462 |||||||||||||||||||| Sbjct: 42963 tagatgcctagaagaaatga 42944
>gb|AC087379.4| Homo sapiens chromosome 11, clone RP11-396O20, complete sequence Length = 167699 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cctggcagcagctctgcccc 127 |||||||||||||||||||| Sbjct: 56995 cctggcagcagctctgcccc 57014
>gb|AC108681.2| Homo sapiens 3q BAC RP11-30O15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 29347 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cttttccagtttcttttcag 410 |||||||||||||||||||| Sbjct: 26110 cttttccagtttcttttcag 26091
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 75 ggcgctgctcgccgccctggccgtcgtcgccg 106 |||| ||||||||| || |||||||||||||| Sbjct: 7877840 ggcggtgctcgccggccaggccgtcgtcgccg 7877809
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 aggccccaggcgctgctcgccgcc 90 |||||| ||||||||||||||||| Sbjct: 39947336 aggcccgaggcgctgctcgccgcc 39947359
>emb|AL645944.11| Human DNA sequence from clone RP11-179G8 on chromosome 1, complete sequence Length = 191247 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgattatattggacctcttg 359 |||||||||||||||||||| Sbjct: 53459 tgattatattggacctcttg 53478
>emb|AL645565.3| Human DNA sequence from clone RP11-397M22 on chromosome 9 Contains a CpG island, complete sequence Length = 146309 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 tctgggtagatgcctagaagaaat 460 |||| ||||||||||||||||||| Sbjct: 82389 tctgagtagatgcctagaagaaat 82366
>emb|AL591242.4| Human DNA sequence from clone RP11-446F17 on chromosome 6 Contains the 5' end of the CYP39A1 gene for cytochrome P450 subfamily XXXIX (oxysterol 7 alpha-hydroxylase) polypeptide 1, the gene for uncoupling protein 4 (UCP4), a novel gene, the 3' end of the PLA2G7 gene for phospholipase A2, group VII (platelet-activating factor acetylhydrolase plasma) (PAFAH LDL-PLA2) and two CpG islands, complete sequence Length = 95107 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tagaagaaatgattcttgct 470 |||||||||||||||||||| Sbjct: 66217 tagaagaaatgattcttgct 66236
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413C03 Length = 162161 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 aggccccaggcgctgctcgccgcc 90 |||||| ||||||||||||||||| Sbjct: 38787 aggcccgaggcgctgctcgccgcc 38810
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 caggcgctgctcgccgccct 92 |||||||||||||||||||| Sbjct: 6984417 caggcgctgctcgccgccct 6984436
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ctgcccctcgcccacagcca 140 |||||||||||||||||||| Sbjct: 1161645 ctgcccctcgcccacagcca 1161626
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gcatctttatctgggtagat 447 |||||||||||||||||||| Sbjct: 3165396 gcatctttatctgggtagat 3165377
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 aggccccaggcgctgctcgccgcc 90 |||||| ||||||||||||||||| Sbjct: 128044 aggcccgaggcgctgctcgccgcc 128067
>gb|AY211023.1| Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence Length = 96742 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 gctcgccgccctggccgtcg 100 |||||||||||||||||||| Sbjct: 68213 gctcgccgccctggccgtcg 68194
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 aggcgctgctcgccgccctggccg 97 ||||||||||||||||||| |||| Sbjct: 667740 aggcgctgctcgccgccctcgccg 667763
>dbj|AB088420.1| Pseudomonas resinovorans plasmid pCAR1, complete sequence Length = 199035 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 ctcgccgccctggccgtcgtcgcc 105 |||||||||||||||| ||||||| Sbjct: 196595 ctcgccgccctggccgccgtcgcc 196618
>emb|BX323027.8| Zebrafish DNA sequence from clone CH211-242D13, complete sequence Length = 139257 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 taatgcccattagcttgtgctttt 395 ||||| |||||||||||||||||| Sbjct: 85100 taatgtccattagcttgtgctttt 85077
>emb|BX255898.9| Zebrafish DNA sequence from clone CH211-248J19, complete sequence Length = 181912 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 taatgcccattagcttgtgctttt 395 ||||| |||||||||||||||||| Sbjct: 71073 taatgtccattagcttgtgctttt 71096
>dbj|AP003307.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-95J9, complete sequence Length = 168559 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgattatattggacctcttg 359 |||||||||||||||||||| Sbjct: 54404 tgattatattggacctcttg 54423
>emb|AL513502.3|HS123J20 Homo sapiens chromosome 9 BAC RP11-123j20, complete sequence Length = 174636 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 tctgggtagatgcctagaagaaat 460 |||| ||||||||||||||||||| Sbjct: 143775 tctgagtagatgcctagaagaaat 143798
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cccaggcgctgctcgccgcc 90 |||||||||||||||||||| Sbjct: 444470 cccaggcgctgctcgccgcc 444489
>emb|AL355101.2|CNS05TCK Human chromosome 14 DNA sequence BAC R-686H21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164380 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ttgtgcttttccagtttctt 405 |||||||||||||||||||| Sbjct: 129864 ttgtgcttttccagtttctt 129845
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 75 ggcgctgctcgccgccctggccgtcgtcgccg 106 |||| ||||||||| || |||||||||||||| Sbjct: 122330 ggcggtgctcgccggccaggccgtcgtcgccg 122361
>gb|AC004045.1|AC004045 Homo sapiens chromosome 4 clone B139M23 map 4q25, complete sequence Length = 106346 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tgattatattggacctcttg 359 |||||||||||||||||||| Sbjct: 67269 tgattatattggacctcttg 67250
>emb|AL731682.20| Mouse DNA sequence from clone RP23-123F7 on chromosome 2, complete sequence Length = 201290 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gtcctggcagcagctctgcc 125 |||||||||||||||||||| Sbjct: 52534 gtcctggcagcagctctgcc 52515 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 94,996,458 Number of extensions: 6286153 Number of successful extensions: 116179 Number of sequences better than 10.0: 74 Number of HSP's gapped: 116179 Number of HSP's successfully gapped: 81 Length of query: 579 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 557 Effective length of database: 18,508,616,841 Effective search space: 10309299580437 Effective search space used: 10309299580437 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
