ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf3e24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001069083.1| Oryza sativa (japonica cultivar-group) Os09g... 46 0.45
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.45
3dbj|AP006059.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.45
4dbj|AK072386.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.45
5gb|AC145030.3| Pongo pygmaeus clone CH253-494A6, complete sequence 44 1.8
6ref|XM_001075686.1| PREDICTED: Rattus norvegicus similar to RNA ... 44 1.8
7ref|XM_001066703.1| PREDICTED: Rattus norvegicus excision repair... 44 1.8
8ref|XM_001057427.1| PREDICTED: Rattus norvegicus similar to RNA ... 44 1.8
9ref|XM_214833.4| PREDICTED: Rattus norvegicus excision repair cr... 44 1.8
10gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 1.8
11ref|XM_568444.1| Cryptococcus neoformans var. neoformans JEC21 t... 44 1.8
12gb|AC145156.61| Medicago truncatula clone mth2-7h6, complete seq... 42 7.0
13ref|XM_001114088.1| PREDICTED: Macaca mulatta similar to apolipo... 42 7.0
14gb|AY262686.1| Glycine max cultivar Williams 82 BAC clone Gm_ISb... 42 7.0
15gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 7.0
16gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, com... 42 7.0
17gb|DQ151607.1| Corylus avellana clone 111 microsatellite CAC-C11... 42 7.0
18gb|AY374712.1| Uncultured delta proteobacterium clone PI_6TA05 1... 42 7.0
19gb|AC098720.2| Mus musculus BAC clone RP23-2N16 from 5, complete... 42 7.0
20gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, com... 42 7.0
21gb|AC068308.12| Homo sapiens 3 BAC RP11-275H4 (Roswell Park Canc... 42 7.0
22emb|AJ698944.1| Equus caballus csf1R gene, smf gene, tigd14 gene... 42 7.0
23emb|Z82203.1|HS360E18 Human DNA sequence from clone RP3-360E18 o... 42 7.0
24dbj|AB074455.1| Macaca fascicularis testis cDNA clone:QtsA-21565... 42 7.0
25emb|AJ297913.2|PPI297913 Plasmid pIPO2T, complete sequence 42 7.0
26gb|AC156995.6| Mus musculus chromosome 5, clone RP23-77E18, comp... 42 7.0
27emb|AL672150.19| Mouse DNA sequence from clone RP23-338A17 on ch... 42 7.0
28gb|AC116691.12| Mus musculus chromosome 1, clone RP24-312I13, co... 42 7.0
29emb|CT005243.3| Pan troglodytes chromosome X clone RP43-008I08 m... 42 7.0 
>ref|NM_001069083.1| Oryza sativa (japonica cultivar-group) Os09g0100800 (Os09g0100800)
           mRNA, complete cds
          Length = 2143
 Score = 46.1 bits (23), Expect = 0.45
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 507 cgacgaggtccagatactcgaggccctggtggcgtatcgccaggaacacggcaag 561
           |||||||||||  || || |||||| ||| |||| |||||||||| |||||||||
Sbjct: 453 cgacgaggtcctcatccttgaggccatggcggcgcatcgccaggagcacggcaag 507
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.45
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 507   cgacgaggtccagatactcgaggccctggtggcgtatcgccaggaacacggcaag 561
             |||||||||||  || || |||||| ||| |||| |||||||||| |||||||||
Sbjct: 99051 cgacgaggtcctcatccttgaggccatggcggcgcatcgccaggagcacggcaag 98997
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>dbj|AP006059.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0023E08
          Length = 127560

 Score = 46.1 bits (23), Expect = 0.45
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 507   cgacgaggtccagatactcgaggccctggtggcgtatcgccaggaacacggcaag 561
             |||||||||||  || || |||||| ||| |||| |||||||||| |||||||||
Sbjct: 99051 cgacgaggtcctcatccttgaggccatggcggcgcatcgccaggagcacggcaag 98997
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>dbj|AK072386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081P06, full
           insert sequence
          Length = 2145

 Score = 46.1 bits (23), Expect = 0.45
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 507 cgacgaggtccagatactcgaggccctggtggcgtatcgccaggaacacggcaag 561
           |||||||||||  || || |||||| ||| |||| |||||||||| |||||||||
Sbjct: 455 cgacgaggtcctcatccttgaggccatggcggcgcatcgccaggagcacggcaag 509
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>gb|AC145030.3| Pongo pygmaeus clone CH253-494A6, complete sequence
          Length = 144449

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1161  agaactaaaaccaagttcaaaa 1182
             ||||||||||||||||||||||
Sbjct: 47827 agaactaaaaccaagttcaaaa 47806
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>ref|XM_001075686.1| PREDICTED: Rattus norvegicus similar to RNA polymerase I-associated
            factor PAF49 (LOC686776), mRNA
          Length = 1731

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 715  aagtgcagcctctgtcacctct 736
            ||||||||||||||||||||||
Sbjct: 1228 aagtgcagcctctgtcacctct 1207
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>ref|XM_001066703.1| PREDICTED: Rattus norvegicus excision repair cross-complementing
            rodent repair deficiency, complementation group 1
            (predicted) (Ercc1_predicted), mRNA
          Length = 1901

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 715  aagtgcagcctctgtcacctct 736
            ||||||||||||||||||||||
Sbjct: 1417 aagtgcagcctctgtcacctct 1438
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>ref|XM_001057427.1| PREDICTED: Rattus norvegicus similar to RNA polymerase I-associated
            factor PAF49 (LOC680493), mRNA
          Length = 1731

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 715  aagtgcagcctctgtcacctct 736
            ||||||||||||||||||||||
Sbjct: 1228 aagtgcagcctctgtcacctct 1207
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>ref|XM_214833.4| PREDICTED: Rattus norvegicus excision repair cross-complementing
            rodent repair deficiency, complementation group 1
            (predicted) (Ercc1_predicted), mRNA
          Length = 1901

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 715  aagtgcagcctctgtcacctct 736
            ||||||||||||||||||||||
Sbjct: 1417 aagtgcagcctctgtcacctct 1438
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>gb|AE017353.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete
              sequence
          Length = 787999

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 909    cttggactttgatgataccaag 930
              ||||||||||||||||||||||
Sbjct: 447295 cttggactttgatgataccaag 447274
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>ref|XM_568444.1| Cryptococcus neoformans var. neoformans JEC21 transferase
           (CNM01530) partial mRNA
          Length = 696

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 909 cttggactttgatgataccaag 930
           ||||||||||||||||||||||
Sbjct: 526 cttggactttgatgataccaag 505
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>gb|AC145156.61| Medicago truncatula clone mth2-7h6, complete sequence
          Length = 138062

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1075   caaaatgaaaacatgcttttg 1095
              |||||||||||||||||||||
Sbjct: 125761 caaaatgaaaacatgcttttg 125781
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>ref|XM_001114088.1| PREDICTED: Macaca mulatta similar to apolipoprotein B mRNA editing
            enzyme, catalytic polypeptide-like 4 (putative)
            (LOC714993), mRNA
          Length = 2642

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 179  cgaagaagaagaaagggaaga 199
            |||||||||||||||||||||
Sbjct: 1347 cgaagaagaagaaagggaaga 1367
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>gb|AY262686.1| Glycine max cultivar Williams 82 BAC clone Gm_ISb001_104_J07, complete
             sequence
          Length = 103334

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1465  taaacggatgcttgttttctc 1485
             |||||||||||||||||||||
Sbjct: 63849 taaacggatgcttgttttctc 63869
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 429   cgacaagtcgagatcggcgccggcc 453
             ||||| |||||||||||||||||||
Sbjct: 65640 cgacaggtcgagatcggcgccggcc 65664
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>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1438   ttatgtgtgtacattctttgctttt 1462
              ||||||||||||||||||| |||||
Sbjct: 176188 ttatgtgtgtacattcttttctttt 176212
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>gb|DQ151607.1| Corylus avellana clone 111 microsatellite CAC-C111 sequence
          Length = 441

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 179 cgaagaagaagaaagggaagaccag 203
           |||||||||||||| ||||||||||
Sbjct: 122 cgaagaagaagaaaaggaagaccag 98
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>gb|AY374712.1| Uncultured delta proteobacterium clone PI_6TA05 16S ribosomal RNA
           gene, partial sequence
          Length = 473

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 25  atctgaccgacaatgccgcctacgc 49
           ||||||||||||| |||||||||||
Sbjct: 202 atctgaccgacaaggccgcctacgc 178
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>gb|AC098720.2| Mus musculus BAC clone RP23-2N16 from 5, complete sequence
          Length = 214995

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1449   cattctttgcttttattaaac 1469
              |||||||||||||||||||||
Sbjct: 110666 cattctttgcttttattaaac 110646
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>gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, complete sequence
          Length = 230585

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1449   cattctttgcttttattaaac 1469
              |||||||||||||||||||||
Sbjct: 217777 cattctttgcttttattaaac 217797
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>gb|AC068308.12| Homo sapiens 3 BAC RP11-275H4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154495

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1480  tttctcatgtgcatttagtga 1500
             |||||||||||||||||||||
Sbjct: 38459 tttctcatgtgcatttagtga 38439
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>emb|AJ698944.1| Equus caballus csf1R gene, smf gene, tigd14 gene, slc26a2 gene, ORF1
            and cGMP-alpha gene
          Length = 142625

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 621  gggcttcagcctgcaggacct 641
            |||||||||||||||||||||
Sbjct: 7590 gggcttcagcctgcaggacct 7570
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>emb|Z82203.1|HS360E18 Human DNA sequence from clone RP3-360E18 on chromosome Xq12-13 Contains
             part of the OPHN1 gene for oligophrenin 1 and three CpG
             islands, complete sequence
          Length = 131903

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1295  caagggaaattgcctcattgc 1315
             |||||||||||||||||||||
Sbjct: 44416 caagggaaattgcctcattgc 44436
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>dbj|AB074455.1| Macaca fascicularis testis cDNA clone:QtsA-21565, similar to human
            hypothetical protein MGC26594, mRNA, NM_203454
          Length = 1846

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 179  cgaagaagaagaaagggaaga 199
            |||||||||||||||||||||
Sbjct: 1342 cgaagaagaagaaagggaaga 1362
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>emb|AJ297913.2|PPI297913 Plasmid pIPO2T, complete sequence
          Length = 45319

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 445 gcgccggccgagccggagaag 465
           |||||||||||||||||||||
Sbjct: 451 gcgccggccgagccggagaag 471
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>gb|AC156995.6| Mus musculus chromosome 5, clone RP23-77E18, complete sequence
          Length = 138507

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1438  ttatgtgtgtacattctttgctttt 1462
             ||||||||||||||||||| |||||
Sbjct: 97834 ttatgtgtgtacattcttttctttt 97810
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>emb|AL672150.19| Mouse DNA sequence from clone RP23-338A17 on chromosome X, complete
            sequence
          Length = 196140

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1590 ggcaaaagggatgaacaagtg 1610
            |||||||||||||||||||||
Sbjct: 8786 ggcaaaagggatgaacaagtg 8766
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>gb|AC116691.12| Mus musculus chromosome 1, clone RP24-312I13, complete sequence
          Length = 154587

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1136  tgaaaagaattgaaagtggaa 1156
             |||||||||||||||||||||
Sbjct: 37464 tgaaaagaattgaaagtggaa 37444
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>emb|CT005243.3| Pan troglodytes chromosome X clone RP43-008I08 map Xq28, complete
              sequence
          Length = 180222

 Score = 42.1 bits (21), Expect = 7.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1295   caagggaaattgcctcattgc 1315
              |||||||||||||||||||||
Sbjct: 102906 caagggaaattgcctcattgc 102886


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 314,676,926
Number of extensions: 17395672
Number of successful extensions: 349234
Number of sequences better than 10.0: 29
Number of HSP's gapped: 349234
Number of HSP's successfully gapped: 29
Length of query: 1845
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1822
Effective length of database: 18,503,978,556
Effective search space: 33714248929032
Effective search space used: 33714248929032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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