ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf168j23 |
|---|---|
| Clone Library Name | barley_pub |
>Q4V899:TM165_RAT Transmembrane protein 165 - Rattus norvegicus (Rat)| Length = 323 Score = 159 bits (403), Expect = 1e-38 Identities = 89/223 (39%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Frame = +3 Query: 90 SLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNLISRKW 269 ++++ ++SE+GDKTFF AAI+AMR+ R VLAG + AL +MT LS G+ A +I R + Sbjct: 100 AISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVY 158 Query: 270 THHITTLLFFVFGIWSLWEGFKXXXXXXXXXXXXX-----KLDADFXXXXXXXXXXXXAT 434 T++++T LF +FGI L EG K K D +F Sbjct: 159 TYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETG 218 Query: 435 EDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVIAQA 614 T Q+ +L F SPIF++A ++TF EWGD+SQ+ TI LAA E+P+GV +GG + Sbjct: 219 TSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHC 277 Query: 615 LCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGIMSLLSGPE 743 LCT AV+GG+ +A +IS + V + G++FL F +L PE Sbjct: 278 LCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISPE 320
>P52875:TM165_MOUSE Transmembrane protein 165 - Mus musculus (Mouse)| Length = 323 Score = 159 bits (403), Expect = 1e-38 Identities = 89/223 (39%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Frame = +3 Query: 90 SLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNLISRKW 269 ++++ ++SE+GDKTFF AAI+AMR+ R VLAG + AL +MT LS G+ A +I R + Sbjct: 100 AISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATTVIPRVY 158 Query: 270 THHITTLLFFVFGIWSLWEGFKXXXXXXXXXXXXX-----KLDADFXXXXXXXXXXXXAT 434 T++++T LF +FGI L EG K K D +F Sbjct: 159 TYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETG 218 Query: 435 EDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVIAQA 614 T Q+ +L F SPIF++A ++TF EWGD+SQ+ TI LAA E+P+GV +GG + Sbjct: 219 TSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHC 277 Query: 615 LCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGIMSLLSGPE 743 LCT AV+GG+ +A +IS + V + G++FL F +L PE Sbjct: 278 LCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISPE 320
>Q9HC07:TM165_HUMAN Transmembrane protein 165 - Homo sapiens (Human)| Length = 324 Score = 157 bits (396), Expect = 1e-37 Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Frame = +3 Query: 90 SLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNLISRKW 269 ++++ ++SE+GDKTFF AAI+AMR+ R VLAG + AL +MT LS G+ A +I R + Sbjct: 100 AISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATTVIPRVY 158 Query: 270 THHITTLLFFVFGIWSLWEGFKXXXXXXXXXXXXX-----KLDADFXXXXXXXXXXXXAT 434 T++++T+LF +FGI L EG K K D +F T Sbjct: 159 TYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVET 218 Query: 435 EDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVIAQA 614 + + + F SPIF++A ++TF EWGD+SQ+ TI LAA E+P+GV +GG + Sbjct: 219 GTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHC 278 Query: 615 LCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGIMSLLSGPE 743 LCT AV+GG+ +A +IS + V + G++FL F +L P+ Sbjct: 279 LCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISPD 321
>Q10320:YD68_SCHPO UPF0016 protein C17G8.08c - Schizosaccharomyces pombe (Fission| yeast) Length = 287 Score = 134 bits (337), Expect = 7e-31 Identities = 86/239 (35%), Positives = 116/239 (48%), Gaps = 17/239 (7%) Frame = +3 Query: 72 LGGLTKSLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPN 251 L L S++M E+GDKTF AA+LA + R V AG SAL +MT L LG AP Sbjct: 47 LRSLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPL 106 Query: 252 LISRKWTHHITTLLFFVFGIWSLWEG-------------FKXXXXXXXXXXXXXKL---- 380 L RK T + +LF +FGI L E F+ +L Sbjct: 107 LFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEG 166 Query: 381 DADFXXXXXXXXXXXXATEDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGL 560 A K K R + FSP+FIKAF++TF EWGD+SQIATI + Sbjct: 167 AAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAM 226 Query: 561 AADENPFGVVIGGVIAQALCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGIMSLLSG 737 AA +N +GV +G + A CT AV+ GK ++++I V G+LF+ FG++ G Sbjct: 227 AASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYFYQG 285 Score = 40.8 bits (94), Expect = 0.010 Identities = 30/103 (29%), Positives = 45/103 (43%) Frame = +3 Query: 435 EDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVIAQA 614 E+ R FL I + S+ F E GDK+ I LA + + V G A Sbjct: 37 EEVHPTNRDFLRSL-----IFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALF 91 Query: 615 LCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGIMSLLSGPE 743 + T V+ G + K+ ++ GVLF++FGI L+ E Sbjct: 92 IMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKE 134
>P52876:Y615_SYNY3 UPF0016 protein sll0615 - Synechocystis sp. (strain PCC 6803)| Length = 206 Score = 132 bits (333), Expect = 2e-30 Identities = 81/219 (36%), Positives = 116/219 (52%) Frame = +3 Query: 69 LLGGLTKSLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAP 248 +L T L + +SE+GDKTFF A ILAMR+PR+ VL G + L MT LS +G + Sbjct: 1 MLTAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFT 60 Query: 249 NLISRKWTHHITTLLFFVFGIWSLWEGFKXXXXXXXXXXXXXKLDADFXXXXXXXXXXXX 428 L +R + ++ LF +FG LW+ ++ A Sbjct: 61 FLPTR-YINYAEVALFLIFGTKLLWDA--------------RRIKATANLEEMEDAEKAI 105 Query: 429 ATEDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVIA 608 A+ + K K P I +++F++TF EWGD++QIATI LAA N +GV G ++ Sbjct: 106 ASGEKKLKIVPRGWG----IVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILG 161 Query: 609 QALCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGIMS 725 +C AVMGGK +A +ISEK V L G+LF LF ++S Sbjct: 162 HTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVS 200 Score = 40.4 bits (93), Expect = 0.013 Identities = 26/83 (31%), Positives = 40/83 (48%) Frame = +3 Query: 75 GGLTKSLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNL 254 G + +S A+T ++E GD+T A LA + V AG + T+ ++ G Sbjct: 120 GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGR 179 Query: 255 ISRKWTHHITTLLFFVFGIWSLW 323 IS K I LLF++F + S W Sbjct: 180 ISEKTVTLIGGLLFYLFAVVSWW 202
>P38301:YB37_YEAST UPF0016 protein YBR187W - Saccharomyces cerevisiae (Baker's yeast)| Length = 280 Score = 120 bits (302), Expect = 8e-27 Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 15/226 (6%) Frame = +3 Query: 90 SLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNLISRKW 269 S++M LSE+GDKTF AA++AMRH R LV + ++L +MT LS +G A +S ++ Sbjct: 45 SVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERY 104 Query: 270 THHITTLLFFVFGIWSLWEGFKXXXXXXXXXXXXXKLDA----DFXXXXXXXXXXXXATE 437 T +LF VFG EG + + D Sbjct: 105 TAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAY 164 Query: 438 DTKKKQ-----------RPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFG 584 D + K R FSP++++ F + F GE GD+SQI+ I +A D + + Sbjct: 165 DKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWY 224 Query: 585 VVIGGVIAQALCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGIM 722 V+ G VI A+C+ AV+GGK LA++IS + + L+S +LF +F +M Sbjct: 225 VIAGAVIGHAICSGLAVVGGKLLATRISIRTITLASSLLFFIFALM 270 Score = 34.3 bits (77), Expect = 0.95 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = +3 Query: 489 FIKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVIAQALCTTAAVMGGKSLASQIS 668 F+ + S+ E GDK+ + +A V + A+ T + + G S + +S Sbjct: 42 FLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLS 101 Query: 669 EKMVELSSGVLFLLFGIMSLLSGPE 743 E+ +G+LFL+FG + G E Sbjct: 102 ERYTAFFAGILFLVFGYKLTMEGLE 126 Score = 32.7 bits (73), Expect = 2.8 Identities = 19/78 (24%), Positives = 38/78 (48%) Frame = +3 Query: 99 MTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVAPNLISRKWTHH 278 M L E+GD++ + +A V+AG + + + L+ G + IS + Sbjct: 199 MVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITL 258 Query: 279 ITTLLFFVFGIWSLWEGF 332 ++LLFF+F + +++ F Sbjct: 259 ASSLLFFIFALMYIYQAF 276
>P0AGF4:XYLE_ECOLI D-xylose-proton symporter - Escherichia coli| Length = 491 Score = 32.3 bits (72), Expect = 3.6 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Frame = +3 Query: 72 LGGLTKSLAMTVLSEVGDK--TFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVA 245 LGGL V+S + T F A +L C+++ + + +LG Sbjct: 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYC 78 Query: 246 PNLISRKWTHHITTLLFFVFGIWSLW 323 N R+ + I +LFF+ G+ S W Sbjct: 79 SNRFGRRDSLKIAAVLFFISGVGSAW 104
>P0AGF5:XYLE_ECO57 D-xylose-proton symporter - Escherichia coli O157:H7| Length = 491 Score = 32.3 bits (72), Expect = 3.6 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Frame = +3 Query: 72 LGGLTKSLAMTVLSEVGDK--TFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVA 245 LGGL V+S + T F A +L C+++ + + +LG Sbjct: 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYC 78 Query: 246 PNLISRKWTHHITTLLFFVFGIWSLW 323 N R+ + I +LFF+ G+ S W Sbjct: 79 SNRFGRRDSLKIAAVLFFISGVGSAW 104
>P13784:FLP_ZYGBI Recombinase Flp protein - Zygosaccharomyces bisporus| Length = 568 Score = 31.6 bits (70), Expect = 6.1 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = -2 Query: 848 FRRHHPSNKVSLVTTPVGHAGWRVLPKFLEKLQLPFWS*QQGHYAEQQEQHPARQFNHLL 669 FR+ S ++ P H G ++ FL K +L W+ G+++ Q Q R+ L Sbjct: 281 FRKFPASPIFAIKHGPKSHLGRHLMNSFLHKNELDSWANSLGNWSSSQNQ---RESGARL 337 Query: 668 GYLRG 654 GY G Sbjct: 338 GYTHG 342
>P01130:LDLR_HUMAN Low-density lipoprotein receptor precursor - Homo sapiens (Human)| Length = 860 Score = 31.2 bits (69), Expect = 8.0 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = -3 Query: 790 LAGECCRSSWRNYNCPSGPDNKD 722 L+GEC SSWR C GPD KD Sbjct: 205 LSGECIHSSWR---CDGGPDCKD 224
>Q9SVT8:AMT14_ARATH Ammonium transporter 1 member 4 - Arabidopsis thaliana (Mouse-ear| cress) Length = 504 Score = 31.2 bits (69), Expect = 8.0 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Frame = +3 Query: 498 AFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVIAQALCTTAAVMGGKSLASQISEKM 677 A+ I F G + +K IA I PFG+++GG GG+ LA+ + + + Sbjct: 388 AWGIIFTGLFAEKRYIAEIFGGDPNRPFGLLMGG-------------GGRLLAAHVVQIL 434 Query: 678 -----VELSSGVLFLLFGIMSLLSGP 740 V ++ G LF + + LL P Sbjct: 435 VITGWVSVTMGTLFFILHKLKLLRIP 460 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 177,107,986 Number of extensions: 3528469 Number of successful extensions: 9995 Number of sequences better than 10.0: 11 Number of HSP's gapped: 9983 Number of HSP's successfully gapped: 18 Length of query: 371 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 256 Effective length of database: 69,142,514 Effective search space: 17700483584 Effective search space used: 17700483584 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
