ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf155i20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829452.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN088E16, full insert sequence Length = 782 Score = 452 bits (228), Expect = e-124 Identities = 360/404 (89%) Strand = Plus / Plus Query: 173 gcggcgggccgccctggtcgtcctcgccaaggccaaggtgtccacgcccaatgccgaccg 232 |||||||||| | || |||||| | || |||| |||||||||||| ||| | |||||||| Sbjct: 167 gcggcgggcctctctcgtcgtcgttgcaaaggtcaaggtgtccactccccaggccgaccg 226 Query: 233 catcgcccgccacgaccgcctccgcaagaaggtgagcggcaccacggagaggccaagact 292 |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 227 catcgcccgccatgtccgcctccgcaagaaggttagcggcaccacggagaggccaagact 286 Query: 293 cagcgttttccgctcaaacaagcatctgtatgctcaggtgatcgacgacacaaagtcgtg 352 ||| ||||||||||||||||| ||| | |||||||| ||||| ||||| |||||||| || Sbjct: 287 cagtgttttccgctcaaacaaacatttatatgctcaagtgattgacgatacaaagtcatg 346 Query: 353 cactctggcttcagcctcaacaatgcacaaatctctttcaaaggagcttgagtactctgc 412 |||||||| |||||| || ||||||||||| |||||||||||||| | || ||||| || Sbjct: 347 cactctggtttcagcttccacaatgcacaagtctctttcaaaggacttggaatactcggc 406 Query: 413 tgggccaacaactgaagtggcacaaaagataggtgaagtgattgccaaatcttgcttgga 472 ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 407 ggggccaacagttgaagtggcacaaaagattggtgaagtgattgccaagtcttgcttgga 466 Query: 473 gaaaggaatcaccaaagtggtctttgaccgagggggtttcctctaccatggccgcatcaa 532 ||||||||| |||||||| || |||||||| || ||||||||||||||||| ||||| || Sbjct: 467 gaaaggaattaccaaagttgtttttgaccggggtggtttcctctaccatggtcgcattaa 526 Query: 533 agctctagctgatgctgctagagagaatgggcttgagttctgaa 576 |||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 527 agctctggctgatgctgctagagagaatgggcttgatttctgaa 570 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 agccatgctagcctcgccggcgctcgccggcgc 91 ||||||||| ||||||||||||||||||||||| Sbjct: 53 agccatgctcgcctcgccggcgctcgccggcgc 85
>emb|CT829451.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA030G03, full insert sequence Length = 778 Score = 452 bits (228), Expect = e-124 Identities = 360/404 (89%) Strand = Plus / Plus Query: 173 gcggcgggccgccctggtcgtcctcgccaaggccaaggtgtccacgcccaatgccgaccg 232 |||||||||| | || |||||| | || |||| |||||||||||| ||| | |||||||| Sbjct: 163 gcggcgggcctctctcgtcgtcgttgcaaaggtcaaggtgtccactccccaggccgaccg 222 Query: 233 catcgcccgccacgaccgcctccgcaagaaggtgagcggcaccacggagaggccaagact 292 |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 223 catcgcccgccatgtccgcctccgcaagaaggttagcggcaccacggagaggccaagact 282 Query: 293 cagcgttttccgctcaaacaagcatctgtatgctcaggtgatcgacgacacaaagtcgtg 352 ||| ||||||||||||||||| ||| | |||||||| ||||| ||||| |||||||| || Sbjct: 283 cagtgttttccgctcaaacaaacatttatatgctcaagtgattgacgatacaaagtcatg 342 Query: 353 cactctggcttcagcctcaacaatgcacaaatctctttcaaaggagcttgagtactctgc 412 |||||||| |||||| || ||||||||||| |||||||||||||| | || ||||| || Sbjct: 343 cactctggtttcagcttccacaatgcacaagtctctttcaaaggacttggaatactcggc 402 Query: 413 tgggccaacaactgaagtggcacaaaagataggtgaagtgattgccaaatcttgcttgga 472 ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 403 ggggccaacagttgaagtggcacaaaagattggtgaagtgattgccaagtcttgcttgga 462 Query: 473 gaaaggaatcaccaaagtggtctttgaccgagggggtttcctctaccatggccgcatcaa 532 ||||||||| |||||||| || |||||||| || ||||||||||||||||| ||||| || Sbjct: 463 gaaaggaattaccaaagttgtttttgaccggggtggtttcctctaccatggtcgcattaa 522 Query: 533 agctctagctgatgctgctagagagaatgggcttgagttctgaa 576 |||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 523 agctctggctgatgctgctagagagaatgggcttgatttctgaa 566 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 agccatgctagcctcgccggcgctcgccggcgc 91 ||||||||| ||||||||||||||||||||||| Sbjct: 49 agccatgctcgcctcgccggcgctcgccggcgc 81
>ref|NM_001058310.1| Oryza sativa (japonica cultivar-group) Os03g0828100 (Os03g0828100) mRNA, complete cds Length = 738 Score = 444 bits (224), Expect = e-121 Identities = 359/404 (88%) Strand = Plus / Plus Query: 173 gcggcgggccgccctggtcgtcctcgccaaggccaaggtgtccacgcccaatgccgaccg 232 |||||||||| | || |||||| | || |||| |||||||||||| ||| | |||||||| Sbjct: 164 gcggcgggcctctctcgtcgtcgttgcaaaggtcaaggtgtccactccccaggccgaccg 223 Query: 233 catcgcccgccacgaccgcctccgcaagaaggtgagcggcaccacggagaggccaagact 292 |||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 224 catcgcccgccatgtccgcctccgcaagaaggttagtggcaccacggagaggccaagact 283 Query: 293 cagcgttttccgctcaaacaagcatctgtatgctcaggtgatcgacgacacaaagtcgtg 352 ||| ||||||||||||||||| ||| | |||||||| ||||| ||||| |||||||| || Sbjct: 284 cagtgttttccgctcaaacaaacatttatatgctcaagtgattgacgatacaaagtcatg 343 Query: 353 cactctggcttcagcctcaacaatgcacaaatctctttcaaaggagcttgagtactctgc 412 |||||||| |||||| || ||||||||||| |||||||||||||| | || ||||| || Sbjct: 344 cactctggtttcagcttccacaatgcacaagtctctttcaaaggacttggaatactcggc 403 Query: 413 tgggccaacaactgaagtggcacaaaagataggtgaagtgattgccaaatcttgcttgga 472 ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 404 agggccaacagttgaagtggcacaaaagattggtgaagtgattgccaagtcttgcttgga 463 Query: 473 gaaaggaatcaccaaagtggtctttgaccgagggggtttcctctaccatggccgcatcaa 532 ||||||||| |||||||| || |||||||| || ||||||||||||||||| ||||| || Sbjct: 464 gaaaggaattaccaaagttgtttttgaccggggtggtttcctctaccatggtcgcattaa 523 Query: 533 agctctagctgatgctgctagagagaatgggcttgagttctgaa 576 |||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 524 agctctggctgatgctgctagagagaatgggcttgatttctgaa 567 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 agccatgctagcctcgccggcgctcgccggcgc 91 ||||||||| ||||||||||||||||||||||| Sbjct: 50 agccatgctcgcctcgccggcgctcgccggcgc 82
>dbj|AK099043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D01, full insert sequence Length = 741 Score = 444 bits (224), Expect = e-121 Identities = 359/404 (88%) Strand = Plus / Plus Query: 173 gcggcgggccgccctggtcgtcctcgccaaggccaaggtgtccacgcccaatgccgaccg 232 |||||||||| | || |||||| | || |||| |||||||||||| ||| | |||||||| Sbjct: 165 gcggcgggcctctctcgtcgtcgttgcaaaggtcaaggtgtccactccccaggccgaccg 224 Query: 233 catcgcccgccacgaccgcctccgcaagaaggtgagcggcaccacggagaggccaagact 292 |||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 225 catcgcccgccatgtccgcctccgcaagaaggttagtggcaccacggagaggccaagact 284 Query: 293 cagcgttttccgctcaaacaagcatctgtatgctcaggtgatcgacgacacaaagtcgtg 352 ||| ||||||||||||||||| ||| | |||||||| ||||| ||||| |||||||| || Sbjct: 285 cagtgttttccgctcaaacaaacatttatatgctcaagtgattgacgatacaaagtcatg 344 Query: 353 cactctggcttcagcctcaacaatgcacaaatctctttcaaaggagcttgagtactctgc 412 |||||||| |||||| || ||||||||||| |||||||||||||| | || ||||| || Sbjct: 345 cactctggtttcagcttccacaatgcacaagtctctttcaaaggacttggaatactcggc 404 Query: 413 tgggccaacaactgaagtggcacaaaagataggtgaagtgattgccaaatcttgcttgga 472 ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 405 agggccaacagttgaagtggcacaaaagattggtgaagtgattgccaagtcttgcttgga 464 Query: 473 gaaaggaatcaccaaagtggtctttgaccgagggggtttcctctaccatggccgcatcaa 532 ||||||||| |||||||| || |||||||| || ||||||||||||||||| ||||| || Sbjct: 465 gaaaggaattaccaaagttgtttttgaccggggtggtttcctctaccatggtcgcattaa 524 Query: 533 agctctagctgatgctgctagagagaatgggcttgagttctgaa 576 |||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 525 agctctggctgatgctgctagagagaatgggcttgatttctgaa 568 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 agccatgctagcctcgccggcgctcgccggcgc 91 ||||||||| ||||||||||||||||||||||| Sbjct: 51 agccatgctcgcctcgccggcgctcgccggcgc 83
>dbj|AK059132.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G10, full insert sequence Length = 684 Score = 444 bits (224), Expect = e-121 Identities = 359/404 (88%) Strand = Plus / Plus Query: 173 gcggcgggccgccctggtcgtcctcgccaaggccaaggtgtccacgcccaatgccgaccg 232 |||||||||| | || |||||| | || |||| |||||||||||| ||| | |||||||| Sbjct: 170 gcggcgggcctctctcgtcgtcgttgcaaaggtcaaggtgtccactccccaggccgaccg 229 Query: 233 catcgcccgccacgaccgcctccgcaagaaggtgagcggcaccacggagaggccaagact 292 |||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 230 catcgcccgccatgtccgcctccgcaagaaggttagtggcaccacggagaggccaagact 289 Query: 293 cagcgttttccgctcaaacaagcatctgtatgctcaggtgatcgacgacacaaagtcgtg 352 ||| ||||||||||||||||| ||| | |||||||| ||||| ||||| |||||||| || Sbjct: 290 cagtgttttccgctcaaacaaacatttatatgctcaagtgattgacgatacaaagtcatg 349 Query: 353 cactctggcttcagcctcaacaatgcacaaatctctttcaaaggagcttgagtactctgc 412 |||||||| |||||| || ||||||||||| |||||||||||||| | || ||||| || Sbjct: 350 cactctggtttcagcttccacaatgcacaagtctctttcaaaggacttggaatactcggc 409 Query: 413 tgggccaacaactgaagtggcacaaaagataggtgaagtgattgccaaatcttgcttgga 472 ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 410 agggccaacagttgaagtggcacaaaagattggtgaagtgattgccaagtcttgcttgga 469 Query: 473 gaaaggaatcaccaaagtggtctttgaccgagggggtttcctctaccatggccgcatcaa 532 ||||||||| |||||||| || |||||||| || ||||||||||||||||| ||||| || Sbjct: 470 gaaaggaattaccaaagttgtttttgaccggggcggtttcctctaccatggtcgcattaa 529 Query: 533 agctctagctgatgctgctagagagaatgggcttgagttctgaa 576 |||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 530 agctctggctgatgctgctagagagaatgggcttgatttctgaa 573 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 agccatgctagcctcgccggcgctcgccggcgc 91 ||||||||| ||||||||||||||||||||||| Sbjct: 56 agccatgctcgcctcgccggcgctcgccggcgc 88
>gb|AY107761.1| Zea mays PCO074536 mRNA sequence Length = 777 Score = 343 bits (173), Expect = 6e-91 Identities = 332/385 (86%) Strand = Plus / Plus Query: 191 cgtcctcgccaaggccaaggtgtccacgcccaatgccgaccgcatcgcccgccacgaccg 250 |||| ||||||||| ||||||| |||||||| | | |||||||||||||||||||| ||| Sbjct: 182 cgtcgtcgccaaggtcaaggtggccacgccccaggacgaccgcatcgcccgccacgtccg 241 Query: 251 cctccgcaagaaggtgagcggcaccacggagaggccaagactcagcgttttccgctcaaa 310 ||||||||||||||| || |||||||| |||||||| || | || |||||||||||||| Sbjct: 242 cctccgcaagaaggtaagtggcaccactgagaggccgaggttgagtgttttccgctcaaa 301 Query: 311 caagcatctgtatgctcaggtgatcgacgacacaaagtcgtgcactctggcttcagcctc 370 ||| |||||||| ||||| || ||||||||||||||| || |||||||||||||| || Sbjct: 302 caaacatctgtacgctcaagtcatcgacgacacaaagcaatgtactctggcttcagcttc 361 Query: 371 aacaatgcacaaatctctttcaaaggagcttgagtactctgctgggccaacaactgaagt 430 ||| |||||||||||||| || ||||| |||| ||||| ||||||||||| | ||| | Sbjct: 362 aaccatgcacaaatctctctccaaggaatttgaatactcggctgggccaacgatcgaaat 421 Query: 431 ggcacaaaagataggtgaagtgattgccaaatcttgcttggagaaaggaatcaccaaagt 490 ||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||| || Sbjct: 422 agcacaaaagatcggtgaggtgattgccaagtcttgtttggagaaagggatcaccaaggt 481 Query: 491 ggtctttgaccgagggggtttcctctaccatggccgcatcaaagctctagctgatgctgc 550 ||||| |||||||| ||||||||||||||||||||||| || ||||| |||||| |||| Sbjct: 482 tgtcttcgaccgaggtggtttcctctaccatggccgcataaaggctctcgctgattctgc 541 Query: 551 tagagagaatgggcttgagttctga 575 |||||| | |||||||| |||||| Sbjct: 542 cagagagcacgggcttgaattctga 566 Score = 54.0 bits (27), Expect = 7e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 58 gagccatgctagcctcgccggcgctcgccggcgcc 92 |||||||||| || ||||||||||||||||||||| Sbjct: 64 gagccatgctcgcgtcgccggcgctcgccggcgcc 98
>dbj|AK062799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C11, full insert sequence Length = 728 Score = 331 bits (167), Expect = 2e-87 Identities = 260/291 (89%) Strand = Plus / Plus Query: 286 caagactcagcgttttccgctcaaacaagcatctgtatgctcaggtgatcgacgacacaa 345 |||||||||| ||||||||||||||||| ||| | |||||||| ||||| ||||| |||| Sbjct: 254 caagactcagtgttttccgctcaaacaaacatttatatgctcaagtgattgacgatacaa 313 Query: 346 agtcgtgcactctggcttcagcctcaacaatgcacaaatctctttcaaaggagcttgagt 405 |||| |||||||||| |||||| || ||||||||||| |||||||||||||| | || | Sbjct: 314 agtcatgcactctggtttcagcttccacaatgcacaagtctctttcaaaggacttggaat 373 Query: 406 actctgctgggccaacaactgaagtggcacaaaagataggtgaagtgattgccaaatctt 465 |||| || ||||||||| |||||||||||||||||| ||||||||||||||||| |||| Sbjct: 374 actcggcagggccaacagttgaagtggcacaaaagattggtgaagtgattgccaagtctt 433 Query: 466 gcttggagaaaggaatcaccaaagtggtctttgaccgagggggtttcctctaccatggcc 525 |||||||||||||||| |||||||| || |||||||| || ||||||||||||||||| | Sbjct: 434 gcttggagaaaggaattaccaaagttgtttttgaccggggtggtttcctctaccatggtc 493 Query: 526 gcatcaaagctctagctgatgctgctagagagaatgggcttgagttctgaa 576 |||| |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 494 gcattaaagctctggctgatgctgctagagagaatgggcttgatttctgaa 544 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 173 gcggcgggccgccctggtcgtcctcgccaaggccaaggtgtccacgcccaatgccgaccg 232 |||||||||| | || |||||| | || |||| |||||||||||| ||| | |||||||| Sbjct: 170 gcggcgggcctctctcgtcgtcgttgcaaaggtcaaggtgtccactccccaggccgaccg 229 Query: 233 catcgcccgccacgaccgcctccgcaaga 261 |||||||||||| | |||||||||||||| Sbjct: 230 catcgcccgccatgtccgcctccgcaaga 258 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 agccatgctagcctcgccggcgctcgccggcgc 91 ||||||||| ||||||||||||||||||||||| Sbjct: 56 agccatgctcgcctcgccggcgctcgccggcgc 88
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 212 bits (107), Expect = 1e-51 Identities = 140/151 (92%) Strand = Plus / Plus Query: 426 gaagtggcacaaaagataggtgaagtgattgccaaatcttgcttggagaaaggaatcacc 485 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 34573097 gaagtggcacaaaagattggtgaagtgattgccaagtcttgcttggagaaaggaattacc 34573156 Query: 486 aaagtggtctttgaccgagggggtttcctctaccatggccgcatcaaagctctagctgat 545 ||||| || |||||||| || ||||||||||||||||| ||||| |||||||| |||||| Sbjct: 34573157 aaagttgtttttgaccggggtggtttcctctaccatggtcgcattaaagctctggctgat 34573216 Query: 546 gctgctagagagaatgggcttgagttctgaa 576 ||||||||||||||||||||||| ||||||| Sbjct: 34573217 gctgctagagagaatgggcttgatttctgaa 34573247 Score = 161 bits (81), Expect = 4e-36 Identities = 135/153 (88%) Strand = Plus / Plus Query: 270 ggcaccacggagaggccaagactcagcgttttccgctcaaacaagcatctgtatgctcag 329 |||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| Sbjct: 34572347 ggcaccacggagaggccaagactcagtgttttccgctcaaacaaacatttatatgctcaa 34572406 Query: 330 gtgatcgacgacacaaagtcgtgcactctggcttcagcctcaacaatgcacaaatctctt 389 ||||| ||||| |||||||| |||||||||| |||||| || ||||||||||| |||||| Sbjct: 34572407 gtgattgacgatacaaagtcatgcactctggtttcagcttccacaatgcacaagtctctt 34572466 Query: 390 tcaaaggagcttgagtactctgctgggccaaca 422 |||||||| | || ||||| || ||||||||| Sbjct: 34572467 tcaaaggacttggaatactcggcagggccaaca 34572499 Score = 89.7 bits (45), Expect = 1e-14 Identities = 81/93 (87%) Strand = Plus / Plus Query: 173 gcggcgggccgccctggtcgtcctcgccaaggccaaggtgtccacgcccaatgccgaccg 232 |||||||||| | || |||||| | || |||| |||||||||||| ||| | |||||||| Sbjct: 34571828 gcggcgggcctctctcgtcgtcgttgcaaaggtcaaggtgtccactccccaggccgaccg 34571887 Query: 233 catcgcccgccacgaccgcctccgcaagaaggt 265 |||||||||||| | |||||||||||||||||| Sbjct: 34571888 catcgcccgccatgtccgcctccgcaagaaggt 34571920 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 59 agccatgctagcctcgccggcgctcgccggcgc 91 ||||||||| ||||||||||||||||||||||| Sbjct: 34571714 agccatgctcgcctcgccggcgctcgccggcgc 34571746
>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence Length = 117505 Score = 212 bits (107), Expect = 1e-51 Identities = 140/151 (92%) Strand = Plus / Minus Query: 426 gaagtggcacaaaagataggtgaagtgattgccaaatcttgcttggagaaaggaatcacc 485 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 43142 gaagtggcacaaaagattggtgaagtgattgccaagtcttgcttggagaaaggaattacc 43083 Query: 486 aaagtggtctttgaccgagggggtttcctctaccatggccgcatcaaagctctagctgat 545 ||||| || |||||||| || ||||||||||||||||| ||||| |||||||| |||||| Sbjct: 43082 aaagttgtttttgaccggggtggtttcctctaccatggtcgcattaaagctctggctgat 43023 Query: 546 gctgctagagagaatgggcttgagttctgaa 576 ||||||||||||||||||||||| ||||||| Sbjct: 43022 gctgctagagagaatgggcttgatttctgaa 42992 Score = 161 bits (81), Expect = 4e-36 Identities = 135/153 (88%) Strand = Plus / Minus Query: 270 ggcaccacggagaggccaagactcagcgttttccgctcaaacaagcatctgtatgctcag 329 |||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| Sbjct: 43892 ggcaccacggagaggccaagactcagtgttttccgctcaaacaaacatttatatgctcaa 43833 Query: 330 gtgatcgacgacacaaagtcgtgcactctggcttcagcctcaacaatgcacaaatctctt 389 ||||| ||||| |||||||| |||||||||| |||||| || ||||||||||| |||||| Sbjct: 43832 gtgattgacgatacaaagtcatgcactctggtttcagcttccacaatgcacaagtctctt 43773 Query: 390 tcaaaggagcttgagtactctgctgggccaaca 422 |||||||| | || ||||| || ||||||||| Sbjct: 43772 tcaaaggacttggaatactcggcagggccaaca 43740 Score = 89.7 bits (45), Expect = 1e-14 Identities = 81/93 (87%) Strand = Plus / Minus Query: 173 gcggcgggccgccctggtcgtcctcgccaaggccaaggtgtccacgcccaatgccgaccg 232 |||||||||| | || |||||| | || |||| |||||||||||| ||| | |||||||| Sbjct: 44411 gcggcgggcctctctcgtcgtcgttgcaaaggtcaaggtgtccactccccaggccgaccg 44352 Query: 233 catcgcccgccacgaccgcctccgcaagaaggt 265 |||||||||||| | |||||||||||||||||| Sbjct: 44351 catcgcccgccatgtccgcctccgcaagaaggt 44319 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 59 agccatgctagcctcgccggcgctcgccggcgc 91 ||||||||| ||||||||||||||||||||||| Sbjct: 44525 agccatgctcgcctcgccggcgctcgccggcgc 44493
>gb|DQ245383.1| Zea mays clone 14950 mRNA sequence Length = 710 Score = 60.0 bits (30), Expect = 1e-05 Identities = 90/110 (81%) Strand = Plus / Plus Query: 442 taggtgaagtgattgccaaatcttgcttggagaaaggaatcaccaaagtggtctttgacc 501 |||| |||||||| || ||||| |||||||||||||| ||||| || |||| ||||||| Sbjct: 424 taggggaagtgatagcgaaatcatgcttggagaaagggatcacaaaggtggcatttgacc 483 Query: 502 gagggggtttcctctaccatggccgcatcaaagctctagctgatgctgct 551 | || |||| || |||||||| ||||| ||||||| || | ||||||| Sbjct: 484 gtggtggttacccttaccatgggcgcattgaagctcttgccgctgctgct 533 Score = 48.1 bits (24), Expect = 0.046 Identities = 60/72 (83%) Strand = Plus / Plus Query: 253 tccgcaagaaggtgagcggcaccacggagaggccaagactcagcgttttccgctcaaaca 312 |||| |||||||| | ||| || |||||||||||||| || |||| || ||||| |||| Sbjct: 235 tccgtaagaaggttaacggtacaacggagaggccaaggctgtgcgtgtttcgctcgaaca 294 Query: 313 agcatctgtatg 324 ||||||| |||| Sbjct: 295 agcatctttatg 306
>gb|DQ245381.1| Zea mays clone 14943 mRNA sequence Length = 710 Score = 60.0 bits (30), Expect = 1e-05 Identities = 90/110 (81%) Strand = Plus / Plus Query: 442 taggtgaagtgattgccaaatcttgcttggagaaaggaatcaccaaagtggtctttgacc 501 |||| |||||||| || ||||| |||||||||||||| ||||| || |||| ||||||| Sbjct: 424 taggggaagtgatagcgaaatcatgcttggagaaagggatcacaaaggtggcatttgacc 483 Query: 502 gagggggtttcctctaccatggccgcatcaaagctctagctgatgctgct 551 | || |||| || |||||||| ||||| ||||||| || | ||||||| Sbjct: 484 gtggtggttacccttaccatgggcgcattgaagctcttgccgctgctgct 533 Score = 48.1 bits (24), Expect = 0.046 Identities = 60/72 (83%) Strand = Plus / Plus Query: 253 tccgcaagaaggtgagcggcaccacggagaggccaagactcagcgttttccgctcaaaca 312 |||| |||||||| | ||| || |||||||||||||| || |||| || ||||| |||| Sbjct: 235 tccgtaagaaggttaacggtacaacggagaggccaaggctgtgcgtgtttcgctcgaaca 294 Query: 313 agcatctgtatg 324 ||||||| |||| Sbjct: 295 agcatctttatg 306
>dbj|AK226429.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL06-11-A01 Length = 678 Score = 58.0 bits (29), Expect = 5e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 447 gaagtgattgccaaatcttgcttggagaaaggaatcaccaaagtggtctttgaccgaggg 506 |||||||| || |||||||||||||||||||| ||||| || || | ||||||||| || Sbjct: 448 gaagtgatagcaaaatcttgcttggagaaaggtatcacaaaggtagcctttgaccgtggt 507 Query: 507 ggtttcctctaccatgg 523 |||| || |||||||| Sbjct: 508 ggttacccttaccatgg 524 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 276 acggagaggccaagactcagcgttttccgctcaaacaagcatctgtatgctcaggtgat 334 |||||||||||||| || | |||||||| |||||||||||||| |||| ||| ||||| Sbjct: 277 acggagaggccaaggctatgtgttttccgatcaaacaagcatctttatgttcaagtgat 335
>ref|NM_103731.3| Arabidopsis thaliana structural constituent of ribosome (AT1G48350) mRNA, complete cds Length = 701 Score = 58.0 bits (29), Expect = 5e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 447 gaagtgattgccaaatcttgcttggagaaaggaatcaccaaagtggtctttgaccgaggg 506 |||||||| || |||||||||||||||||||| ||||| || || | ||||||||| || Sbjct: 446 gaagtgatagcaaaatcttgcttggagaaaggtatcacaaaggtagcctttgaccgtggt 505 Query: 507 ggtttcctctaccatgg 523 |||| || |||||||| Sbjct: 506 ggttacccttaccatgg 522 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 276 acggagaggccaagactcagcgttttccgctcaaacaagcatctgtatgctcaggtgat 334 |||||||||||||| || | |||||||| |||||||||||||| |||| ||| ||||| Sbjct: 275 acggagaggccaaggctatgtgttttccgatcaaacaagcatctttatgttcaagtgat 333
>gb|AF336922.1| Arabidopsis thaliana clone C00230 (e) putative ribosomal protein L18 (At1g48350) mRNA, complete cds Length = 513 Score = 58.0 bits (29), Expect = 5e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 447 gaagtgattgccaaatcttgcttggagaaaggaatcaccaaagtggtctttgaccgaggg 506 |||||||| || |||||||||||||||||||| ||||| || || | ||||||||| || Sbjct: 385 gaagtgatagcaaaatcttgcttggagaaaggtatcacaaaggtagcctttgaccgtggt 444 Query: 507 ggtttcctctaccatgg 523 |||| || |||||||| Sbjct: 445 ggttacccttaccatgg 461 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 276 acggagaggccaagactcagcgttttccgctcaaacaagcatctgtatgctcaggtgat 334 |||||||||||||| || | |||||||| |||||||||||||| |||| ||| ||||| Sbjct: 214 acggagaggccaaggctatgtgttttccgatcaaacaagcatctttatgttcaagtgat 272
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete sequence Length = 102078 Score = 58.0 bits (29), Expect = 5e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 447 gaagtgattgccaaatcttgcttggagaaaggaatcaccaaagtggtctttgaccgaggg 506 |||||||| || |||||||||||||||||||| ||||| || || | ||||||||| || Sbjct: 35977 gaagtgatagcaaaatcttgcttggagaaaggtatcacaaaggtagcctttgaccgtggt 35918 Query: 507 ggtttcctctaccatgg 523 |||| || |||||||| Sbjct: 35917 ggttacccttaccatgg 35901 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 276 acggagaggccaagactcagcgttttccgctcaaacaagcatctgtatgctcaggtgat 334 |||||||||||||| || | |||||||| |||||||||||||| |||| ||| ||||| Sbjct: 36242 acggagaggccaaggctatgtgttttccgatcaaacaagcatctttatgttcaagtgat 36184
>emb|BX813652.1|CNS0ACAU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZH01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 661 Score = 58.0 bits (29), Expect = 5e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 447 gaagtgattgccaaatcttgcttggagaaaggaatcaccaaagtggtctttgaccgaggg 506 |||||||| || |||||||||||||||||||| ||||| || || | ||||||||| || Sbjct: 434 gaagtgatagcaaaatcttgcttggagaaaggtatcacaaaggtagcctttgaccgtggt 493 Query: 507 ggtttcctctaccatgg 523 |||| || |||||||| Sbjct: 494 ggttacccttaccatgg 510 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 276 acggagaggccaagactcagcgttttccgctcaaacaagcatctgtatgctcaggtgat 334 |||||||||||||| || | |||||||| |||||||||||||| |||| ||| ||||| Sbjct: 263 acggagaggccaaggctatgtgttttccgatcaaacaagcatctttatgttcaagtgat 321
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome Length = 1485148 Score = 50.1 bits (25), Expect = 0.012 Identities = 28/29 (96%) Strand = Plus / Plus Query: 531 aaagctctagctgatgctgctagagagaa 559 ||||||||||||||||| ||||||||||| Sbjct: 313641 aaagctctagctgatgcagctagagagaa 313669
>gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4g10, complete sequence Length = 148303 Score = 50.1 bits (25), Expect = 0.012 Identities = 85/105 (80%) Strand = Plus / Plus Query: 469 tggagaaaggaatcaccaaagtggtctttgaccgagggggtttcctctaccatggccgca 528 |||| ||||||||||| || || ||||||||| |||| |||| || ||||||||||| Sbjct: 45691 tggaaaaaggaatcacaaaggtagtctttgacagaggtggttacccataccatggccgtg 45750 Query: 529 tcaaagctctagctgatgctgctagagagaatgggcttgagttct 573 | |||||| | |||||||| ||| | || |||| |||||||||| Sbjct: 45751 ttaaagctattgctgatgcagctcgcgaacatggccttgagttct 45795
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 48.1 bits (24), Expect = 0.046 Identities = 33/36 (91%) Strand = Plus / Plus Query: 516 taccatggccgcatcaaagctctagctgatgctgct 551 |||||||||||| ||||||| || |||||||||||| Sbjct: 524058 taccatggccgcgtcaaagcgctggctgatgctgct 524093
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 48.1 bits (24), Expect = 0.046 Identities = 33/36 (91%) Strand = Plus / Plus Query: 516 taccatggccgcatcaaagctctagctgatgctgct 551 |||||||||||| ||||||| || |||||||||||| Sbjct: 558704 taccatggccgcgtcaaagcgctggctgatgctgct 558739
>gb|AC113006.9| Mus musculus chromosome 16, clone RP23-332O12, complete sequence Length = 195941 Score = 46.1 bits (23), Expect = 0.18 Identities = 29/31 (93%) Strand = Plus / Minus Query: 344 aaagtcgtgcactctggcttcagcctcaaca 374 ||||| |||||||||||| |||||||||||| Sbjct: 70845 aaagtggtgcactctggcctcagcctcaaca 70815
>dbj|AK233612.1| Sus scrofa mRNA, clone:LVRM10187D10, expressed in liver Length = 491 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 651 gctctgcagacacggctcctct 672 |||||||||||||||||||||| Sbjct: 150 gctctgcagacacggctcctct 129
>gb|DQ872407.1| Triticum aestivum fasciclin-like protein FLA34 mRNA, complete cds Length = 897 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 gcccgccacgaccgcctccgca 258 |||||||||||||||||||||| Sbjct: 87 gcccgccacgaccgcctccgca 108
>gb|AC170862.1| Mus musculus chromosome 19, clone wi1-593J16, complete sequence Length = 40693 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 463 cttgcttggagaaaggaatcac 484 |||||||||||||||||||||| Sbjct: 39427 cttgcttggagaaaggaatcac 39406
>gb|AC171175.1| Mus musculus chromosome 19, clone wi1-1715L8, complete sequence Length = 37475 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 463 cttgcttggagaaaggaatcac 484 |||||||||||||||||||||| Sbjct: 1810 cttgcttggagaaaggaatcac 1789
>dbj|AK110173.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-G08, full insert sequence Length = 3602 Score = 44.1 bits (22), Expect = 0.71 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 tgccgaccgcatcgcccgccac 245 |||||||||||||||||||||| Sbjct: 2278 tgccgaccgcatcgcccgccac 2257
>gb|CP000453.1| Alkalilimnicola ehrlichei MLHE-1, complete genome Length = 3275944 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 cgaaccccacgaccagaagcg 47 ||||||||||||||||||||| Sbjct: 1867444 cgaaccccacgaccagaagcg 1867464
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 cgccctcgcactcgccgtcgcggcg 178 ||||||||| ||||||||||||||| Sbjct: 6570907 cgccctcgccctcgccgtcgcggcg 6570931
>gb|AC189518.1| Brassica rapa subsp. pekinensis clone KBrB090M17, complete sequence Length = 104777 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 591 ttgtaatattctcttgttttc 611 ||||||||||||||||||||| Sbjct: 39560 ttgtaatattctcttgttttc 39580
>ref|XM_976117.1| PREDICTED: Mus musculus TSC22 domain family 2 (Tsc22d2), mRNA Length = 5423 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 gtcgggcagccgcagcatccacctcccgt 144 |||||||||||||||| |||||| ||||| Sbjct: 775 gtcgggcagccgcagcctccaccgcccgt 803
>ref|XM_485240.4| PREDICTED: Mus musculus TSC22 domain family 2, transcript variant 1 (Tsc22d2), mRNA Length = 8829 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 gtcgggcagccgcagcatccacctcccgt 144 |||||||||||||||| |||||| ||||| Sbjct: 775 gtcgggcagccgcagcctccaccgcccgt 803
>ref|XM_913779.2| PREDICTED: Mus musculus TSC22 domain family 2, transcript variant 1 (Tsc22d2), mRNA Length = 8830 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 gtcgggcagccgcagcatccacctcccgt 144 |||||||||||||||| |||||| ||||| Sbjct: 775 gtcgggcagccgcagcctccaccgcccgt 803
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome Length = 1111496 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 531 aaagctctagctgatgctgctagagagaa 559 |||||| |||||||||| ||||||||||| Sbjct: 820499 aaagctttagctgatgcagctagagagaa 820471
>gb|AE008651.1| Rickettsia conorii str. Malish 7, section 83 of 114 of the complete genome Length = 10098 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 531 aaagctctagctgatgctgctagagagaa 559 ||||| ||||||||||| ||||||||||| Sbjct: 7180 aaagcgctagctgatgcagctagagagaa 7152
>gb|AC121794.3| Mus musculus BAC clone RP23-413C3 from chromosome 3, complete sequence Length = 195453 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 116 gtcgggcagccgcagcatccacctcccgt 144 |||||||||||||||| |||||| ||||| Sbjct: 129317 gtcgggcagccgcagcctccaccgcccgt 129289
>gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, complete sequence Length = 218747 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 121 gcagccgcagcatccacctcccgtccgca 149 ||||||||||||||| |||||| |||||| Sbjct: 163900 gcagccgcagcatccccctcccctccgca 163872
>dbj|AK132430.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632423D15 product:hypothetical Proline-rich region profile containing protein, full insert sequence Length = 3024 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 gtcgggcagccgcagcatccacctcccgt 144 |||||||||||||||| |||||| ||||| Sbjct: 587 gtcgggcagccgcagcctccaccgcccgt 615
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 2.8 Identities = 39/45 (86%) Strand = Plus / Minus Query: 297 gttttccgctcaaacaagcatctgtatgctcaggtgatcgacgac 341 ||||||||||| ||||||||| |||| || ||| | ||||||||| Sbjct: 3100511 gttttccgctcgaacaagcatatgtacgcccagatcatcgacgac 3100467 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 229 accgcatcgcccgccacgaccgcct 253 |||||||||||||||||| |||||| Sbjct: 3210987 accgcatcgcccgccacgtccgcct 3210963
>dbj|AP006865.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT37H21, TM1032, complete sequence Length = 95067 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 ttgagttctgaattttcctgt 585 ||||||||||||||||||||| Sbjct: 36560 ttgagttctgaattttcctgt 36540
>emb|AJ235272.1|RPXX03 Rickettsia prowazekii strain Madrid E, complete genome; segment 3/4 Length = 279110 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 531 aaagctctagctgatgctgctagagagaa 559 |||||| |||||||||| ||||||||||| Sbjct: 217377 aaagctttagctgatgcagctagagagaa 217349
>gb|AC154840.2| Mus musculus BAC clone RP23-61I7 from chromosome 14, complete sequence Length = 195596 Score = 42.1 bits (21), Expect = 2.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 121 gcagccgcagcatccacctcccgtccgca 149 ||||||||||||||| |||||| |||||| Sbjct: 148692 gcagccgcagcatccccctcccctccgca 148720
>gb|AE005122.1| Halobacterium sp. NRC-1 section 153 of 170 of the complete genome Length = 10655 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gccgaccgcatcgcccgccac 245 ||||||||||||||||||||| Sbjct: 9031 gccgaccgcatcgcccgccac 9051 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 130,620,504 Number of extensions: 7522918 Number of successful extensions: 143591 Number of sequences better than 10.0: 42 Number of HSP's gapped: 143591 Number of HSP's successfully gapped: 64 Length of query: 752 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 730 Effective length of database: 18,508,616,841 Effective search space: 13511290293930 Effective search space used: 13511290293930 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
