>Q84WJ2:PRI2_ARATH Probable DNA primase large subunit - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 454
 Score =  624 bits (1608), Expect = e-178
 Identities = 297/454 (65%), Positives = 366/454 (80%), Gaps = 1/454 (0%)
 Frame = +2

Query: 158  MEIVRSQRQLXXXXXXXXXXXXXXXXLPTYRVAPQLEVRLEEFELFAIDRLRVLKGISDG 337
            ME++RSQ++                 LP Y  AP +EVRLEEFELFAIDRLRVLKG+SDG
Sbjct: 1    MEVIRSQKRTVSNDVVSTPT------LPLYLTAPHMEVRLEEFELFAIDRLRVLKGVSDG 54

Query: 338  LSRGKRPEEMEKLVSELWKAHMRHQDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMEN 517
            L+R + P EM+ LV  LWK HMR  + +E +NKDIISHFVLRLVYCR++EL+KWFLSME 
Sbjct: 55   LARARNPNEMDDLVETLWKEHMRLSNVSEMINKDIISHFVLRLVYCRSDELKKWFLSMET 114

Query: 518  TLFRYRFRLESPESQRLLMSEFQLPYKALPHSEFEAVKDKLSQVARSISQ-STSVESVFF 694
             LFR+RFRL+  E QR ++ EF LPYKA+  +E E++K++L  VARS  Q S+ VE++++
Sbjct: 115  ALFRHRFRLKKIEEQRAIVGEFGLPYKAVIGAELESLKERLGLVARSHGQISSDVENIYY 174

Query: 695  KVPFEEVPDLVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQ 874
            KVPFEEVPDLVA+RRV L KG+A+VA +Q+VSLVVTQFR ++SKAL+LTNRKWT TI+E+
Sbjct: 175  KVPFEEVPDLVASRRVLLQKGFAFVAGTQLVSLVVTQFRSHLSKALILTNRKWTTTIRER 234

Query: 875  EKDRLTPIVEALSNAYFGPDYSQKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHL 1054
            EKDRLTPIVEALS +Y GPDYSQ  + A+IS KDIDQ++++SFPLCMRH+ EKLRE+HHL
Sbjct: 235  EKDRLTPIVEALSTSYLGPDYSQSNEYADISLKDIDQVSKSSFPLCMRHLFEKLREDHHL 294

Query: 1055 KHGGRMQXXXXXXXXXXXXEDAVTFWRSEFSQKVGSERFDKEYAYGIRHNYGKEGKRTDY 1234
            KHGGRMQ            +DA+ FWR EF++KVGSERFDKEYAY IRHNYGKEGKRTDY
Sbjct: 295  KHGGRMQLGLFLKGVGLKLDDALAFWREEFTKKVGSERFDKEYAYAIRHNYGKEGKRTDY 354

Query: 1235 TPYSCQKIISATPGVGDHHGCPYRHFGEENLRAALNNMGVSGNALEGILDKVKNRHYQLA 1414
            TPY+C KII++ PG GDHHGCPYRHF E+NL+AAL+ MG+S   +E ++DKV+NRHYQLA
Sbjct: 355  TPYACSKIITSAPGAGDHHGCPYRHFSEDNLKAALSRMGLSSRGMEDVMDKVRNRHYQLA 414

Query: 1415 CTMTFEATHGVSCDTGINHPNQYFSESQKVLQAK 1516
            CT+TFEA +G SCDTGINHPNQYF ESQK+L++K
Sbjct: 415  CTLTFEAVYGTSCDTGINHPNQYFEESQKILKSK 448

>P33610:PRI2_MOUSE DNA primase large subunit - Mus musculus (Mouse)|
          Length = 505

 Score =  330 bits (845), Expect = 2e-89
 Identities = 176/433 (40%), Positives = 257/433 (59%), Gaps = 9/433 (2%)
 Frame = +2

Query: 236  LPTYRVAPQLEVRLEEFELFAIDRLRVLKGISD-GLSRGKRPEEME-KLVSELWKAHMRH 409
            L  Y   P   + L EFE  A DR+++LK I + G+S  K  E+ + KL +E+ K    +
Sbjct: 26   LQFYLQPPTENISLTEFENLAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFSY 85

Query: 410  ----QDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMS 577
                +D  E   +D ISHF+LRL YC++E+LR+WF+  E  L R+RF +   +  +  + 
Sbjct: 86   RENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFLK 145

Query: 578  EFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVANRRVFLSKG 757
            +  L ++A+   E    +  +   + S+S         +KVPF +  DL   R+V+L  G
Sbjct: 146  DSHLHFEAISDEEKTLREQDIMASSPSLSGIKLESESVYKVPFADALDLFRGRKVYLEDG 205

Query: 758  YAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEALSNAYFGPDY 937
            +AYV +  +V++++ +FR  +SKAL LT R   A    Q  +RL P++  LS++Y G DY
Sbjct: 206  FAYVPLKDIVAIILNEFRATLSKALALTARSLPAV---QSDERLQPLLNHLSHSYTGQDY 262

Query: 938  SQKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXXXXED 1117
            S + +  +IS   ID L+  SFP CMR + + LRENHHL+HGGRMQ            E 
Sbjct: 263  STQKNTGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQ 322

Query: 1118 AVTFWRSEFSQ-KVGSERFDKEYAYGIRHNYGKEGKRTDYTPYSCQKII-SATPGVGDHH 1291
            A+ FW+ EF + K+  ++FDK Y+Y IRH++GKEGKRTDYTP+SC KII +  PG GD+H
Sbjct: 323  ALQFWKQEFIRGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPGQGDYH 382

Query: 1292 GCPYRHFGEENLRAALNNMGVSGNALEGILDKVKNRHYQLACTMTFEATHGV-SCDTGIN 1468
            GCP+RH   E L+  + +  +  + +  ILD VK  HYQ+AC   FE TH V  C   +N
Sbjct: 383  GCPFRHSDAELLKQKMQSYKIPASGISQILDLVKGNHYQVACQKYFEMTHNVDDCGFSLN 442

Query: 1469 HPNQYFSESQKVL 1507
            HPNQ+F ESQ++L
Sbjct: 443  HPNQFFFESQRIL 455

>P49643:PRI2_HUMAN DNA primase large subunit - Homo sapiens (Human)|
          Length = 509

 Score =  330 bits (845), Expect = 2e-89
 Identities = 180/433 (41%), Positives = 258/433 (59%), Gaps = 9/433 (2%)
 Frame = +2

Query: 236  LPTYRVAPQLEVRLEEFELFAIDRLRVLKGISD-GLSRGKRPEEME-KLVSELWKAHMRH 409
            L  Y   P   + L EFE  AIDR+++LK + + G+S  K  E+ + KL SEL K    +
Sbjct: 26   LQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSY 85

Query: 410  ----QDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMS 577
                +D  E   +D ISHF+LRL YC++EELR+WF+  E  L R+RF +   +  +  + 
Sbjct: 86   RENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLK 145

Query: 578  EFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVANRRVFLSKG 757
            + QL ++A+   E    + ++   + S+S         +K+PF +  DL   R+V+L  G
Sbjct: 146  DSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDG 205

Query: 758  YAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEALSNAYFGPDY 937
            +AYV +  +V++++ +FR  +SKAL LT R   A    Q  +RL P++  LS++Y G DY
Sbjct: 206  FAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV---QSDERLQPLLNHLSHSYTGQDY 262

Query: 938  SQKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXXXXED 1117
            S + +  +IS   ID L+  SFP CMR + + LRENHHL+HGGRMQ            E 
Sbjct: 263  STQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQ 322

Query: 1118 AVTFWRSEFSQ-KVGSERFDKEYAYGIRHNYGKEGKRTDYTPYSCQKII-SATPGVGDHH 1291
            A+ FW+ EF + K+  ++FDK Y+Y IRH++GKEGKRTDYTP+SC KII S  P  GD+H
Sbjct: 323  ALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYH 382

Query: 1292 GCPYRHFGEENLRAALNNMGVSGNALEGILDKVKNRHYQLACTMTFEATHGV-SCDTGIN 1468
            GCP+RH   E L+  L +  +S   +  ILD VK  HYQ+AC   FE  H V  C   +N
Sbjct: 383  GCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLN 442

Query: 1469 HPNQYFSESQKVL 1507
            HPNQ+F ESQ++L
Sbjct: 443  HPNQFFCESQRIL 455

>O89044:PRI2_RAT DNA primase large subunit - Rattus norvegicus (Rat)|
          Length = 507

 Score =  325 bits (834), Expect = 3e-88
 Identities = 175/433 (40%), Positives = 253/433 (58%), Gaps = 9/433 (2%)
 Frame = +2

Query: 236  LPTYRVAPQLEVRLEEFELFAIDRLRVLKGISD-GLSRGKRPEEME-KLVSELWKAHMRH 409
            L  Y   P   + L EFE  A DR+++LK I + G+S  K  E+ + KL +E+ K    +
Sbjct: 26   LQFYLQPPTENISLTEFESLAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFSY 85

Query: 410  ----QDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMS 577
                +D  E   +D ISHF+LRL YC++E+LR+WF+  E  L R+RF +   +  +  + 
Sbjct: 86   RENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFLK 145

Query: 578  EFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVANRRVFLSKG 757
            +  L ++A+   E    +  +   + S+S         +KVPF +  DL   R+V+L  G
Sbjct: 146  DTHLHFEAISDEEKTLREQDIMASSPSLSGVRWESESVYKVPFADALDLFRGRKVYLEDG 205

Query: 758  YAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEALSNAYFGPDY 937
            +AYV +  +V++++ +FR  +SKAL LT R   A    Q  +RL P++  LS++Y G DY
Sbjct: 206  FAYVPLKDIVAIILNEFRATLSKALALTARSLPAV---QSDERLQPLLSHLSHSYTGQDY 262

Query: 938  SQKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXXXXED 1117
            S +    +IS   ID L+  SFP CMR + + LRENHHL+HGGRMQ            E 
Sbjct: 263  STQKSTGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQ 322

Query: 1118 AVTFWRSEFSQ-KVGSERFDKEYAYGIRHNYGKEGKRTDYTPYSCQKII-SATPGVGDHH 1291
            A+ FW+ EF + K+  ++FDK Y+Y IRH++GKEGKRTDYTP+SC KII +  P  GD H
Sbjct: 323  ALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPSQGDFH 382

Query: 1292 GCPYRHFGEENLRAALNNMGVSGNALEGILDKVKNRHYQLACTMTFEATHGV-SCDTGIN 1468
            GCP+RH   E L+  +    +  + +  ILD VK  HYQ+AC   FE TH V  C   +N
Sbjct: 383  GCPFRHSDAELLKQKMQTYKIPASGISQILDLVKGNHYQVACQKYFEMTHNVDDCGFSLN 442

Query: 1469 HPNQYFSESQKVL 1507
            HPNQ+F ESQ++L
Sbjct: 443  HPNQFFFESQRIL 455

>Q9VPH2:PRI2_DROME DNA primase large subunit - Drosophila melanogaster (Fruit fly)|
          Length = 533

 Score =  300 bits (769), Expect = 1e-80
 Identities = 166/437 (37%), Positives = 254/437 (58%), Gaps = 19/437 (4%)
 Frame = +2

Query: 245  YRVAPQLEVRLEEFELFAIDRLRVLKGISDGLSRGKR--PEEMEKLVS-----ELWKAHM 403
            Y   P  +V ++EFE  A++RLR+L+ +    +R  R   +E +++VS     E  ++++
Sbjct: 31   YHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVLSDEWKEIVSADLTREGLRSYL 90

Query: 404  R---------HQDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPE 556
            R         H+   +T  +D +SHF+LRL YCR+E+L +WF++ E  LFRY+F   S  
Sbjct: 91   RLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFAALSSF 150

Query: 557  SQRLLMSEFQLPYKALPHSEFEAVKDKL--SQVARSISQSTSVESVFFKVPFEEVPDLVA 730
              +  +         L  ++ + VKD L  S V +S+++   ++  F+KVPF +V DLV 
Sbjct: 151  EVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIELLD--FYKVPFTQVLDLVR 208

Query: 731  NRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKD-RLTPIVEA 907
             RR FL  GYAYV    +VSLV T+ +  I + L          +++ E D R++  ++A
Sbjct: 209  GRRCFLKAGYAYVNTHDLVSLVGTKQQDEIEQGLQAAK----TMVEDVEADERISRTLKA 264

Query: 908  LSNAYFGPDYSQKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXX 1087
            L N+Y G DY+   DAA +  + +DQL++TS PLCMR   E +R NHH+KH GRMQ    
Sbjct: 265  LHNSYTGRDYTVCRDAA-VPIESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYGLF 323

Query: 1088 XXXXXXXXEDAVTFWRSEFSQKVGSERFDKEYAYGIRHNYGKEGKRTDYTPYSCQKIISA 1267
                    ED++ FWR EF++K+ +++F + Y Y I HNYGK+G   +YTPYSC KII  
Sbjct: 324  LKGIGVALEDSLRFWREEFTKKMDADKFTRSYEYNIYHNYGKKGSMVNYTPYSCAKIIKD 383

Query: 1268 TPGVGDHHGCPYRHFGEENLRAALNNMGVSGNALEGILDKVKNRHYQLACTMTFEATHGV 1447
              G GD HGCPY++  + +L+  L++ G+S +A++ ++  V   HYQ+ C   F+ TH  
Sbjct: 384  VAGPGDCHGCPYKNMDQGSLKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNS 443

Query: 1448 SCDTGINHPNQYFSESQ 1498
              +  INHPN YF ESQ
Sbjct: 444  PVEPSINHPNNYFEESQ 460

>O74761:PRI2_SCHPO DNA primase large subunit - Schizosaccharomyces pombe (Fission yeast)|
          Length = 459

 Score =  271 bits (694), Expect = 5e-72
 Identities = 162/433 (37%), Positives = 237/433 (54%), Gaps = 16/433 (3%)
 Frame = +2

Query: 245  YRVAPQLEVRLEEFELFAIDRLRVLKGISDGLSRGKRPEEMEKLVSELWKAHM------- 403
            Y+  P  E+ +EEFE +AIDRL VL  I   + R K   E+  ++ ++    +       
Sbjct: 33   YKKPPVSEISIEEFETWAIDRLVVLGEIESAMLRNKTKNELNGIIKKILDKRLPMSSNMA 92

Query: 404  ---RHQDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLM 574
               +     E   KD  SHF+LRL + R++ELR  FL  E+TLFR+RF  E    ++  +
Sbjct: 93   RTVKGNSLDEERRKDHYSHFILRLAFSRSDELRIRFLRAESTLFRFRFVNEETRERQAFI 152

Query: 575  SEFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVANRRVFLSK 754
                  ++++   E +   +KL    ++ SQ       FFKVPF +VPDLV  R VF+ K
Sbjct: 153  DSLDFQWESVSQEEKDVFYEKL----QASSQRNIENESFFKVPFFKVPDLVERRAVFVHK 208

Query: 755  GYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEALSNAYFGPD 934
            GYAYV  S+ VSLVV +F  N+ KAL  T +   +  +  E DRL PI+  LS  +  P+
Sbjct: 209  GYAYVPFSEQVSLVVEEFEENLKKALESTAK---SLPRLDEDDRLLPILNHLSKGFVAPE 265

Query: 935  YS-QKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXXXX 1111
             S     +  I+   +D    + FPLC +H+ E L+ + HL+H GR+Q            
Sbjct: 266  SSIVAPKSGAITAGQVDSFV-SHFPLCAKHLHEVLKRDKHLRHFGRLQYGLFLKDIGLSV 324

Query: 1112 EDAVTFWRSEFSQKVGSERFDKEYAYGIRHNYGKEGKRTDYTPYSCQKIISATP-GVGDH 1288
            ++A+ FWR  F+  V  ++F+KEY Y IRH YG EG R +Y  Y+CQ+I++    G GD 
Sbjct: 325  DEALVFWRKSFT-NVTEDKFNKEYRYNIRHTYGLEGNRKNYKGYNCQQILTGPQLGPGDA 383

Query: 1289 HGCPYRHFGEENLRAALNNMGVSGNA--LEGILDKVKNRHYQLACTMTFEATHG--VSCD 1456
            HGCPYR +   NL +AL +MG++ ++     +++ VK RHY +ACT  FE TH    S +
Sbjct: 384  HGCPYRTYSVNNLVSALASMGIAPDSAGCREVVEAVKARHYHIACTRVFELTHPNVGSLE 443

Query: 1457 TGINHPNQYFSES 1495
              I+HP QYF  S
Sbjct: 444  ESIHHPLQYFQLS 456

>P20457:PRI2_YEAST DNA primase large subunit - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 528

 Score =  259 bits (661), Expect = 4e-68
 Identities = 159/469 (33%), Positives = 249/469 (53%), Gaps = 35/469 (7%)
 Frame = +2

Query: 236  LPTYRVAPQLEVRLEEFELFAIDRLRVLKGISDGLSRGKRPEEMEKLVS-ELWKAHMRHQ 412
            L  Y + PQ E+ LE+FE++AIDRL++L  I   LSR K  +E+E ++  +  K    + 
Sbjct: 59   LSFYDLPPQGEITLEQFEIWAIDRLKILLEIESCLSRNKSIKEIETIIKPQFQKLLPFNT 118

Query: 413  DPAETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMSEFQLP 592
            +  E   KD  SHF+LRL +CR++ELR+ F+  E  LF+ RF + +   Q   +    LP
Sbjct: 119  ESLEDRKKDYYSHFILRLCFCRSKELREKFVRAETFLFKIRFNMLTSTDQTKFVQSLDLP 178

Query: 593  YKALPHSEFEAVKDKLSQVARSISQSTSVE---------------SVFFKVPFEEVPDLV 727
                  +E +A  +   Q+ +++S S   +                 F K+PFE V +LV
Sbjct: 179  LLQFISNEEKA--ELSHQLYQTVSASLQFQLNLNEEHQRKQYFQQEKFIKLPFENVIELV 236

Query: 728  ANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEA 907
             NR VFL  GYAY+   Q ++L+  +F   +++ L+ T   +    +  E DRL PI+  
Sbjct: 237  GNRLVFLKDGYAYLPQFQQLNLLSNEFASKLNQELIKT---YQYLPRLNEDDRLLPILNH 293

Query: 908  LSNAYFGPDYSQKTDAAEISPKDIDQLARTS---------FPLCMRHMLEKLRENHHLKH 1060
            LS+ Y   D++Q+  A + S    D++   S         +PLC+++++E L++NHHL++
Sbjct: 294  LSSGYTIADFNQQK-ANQFSENVDDEINAQSVWSEEISSNYPLCIKNLMEGLKKNHHLRY 352

Query: 1061 GGRMQXXXXXXXXXXXXEDAVTFWRSEFSQK--VGSERFDKEYAYGIRHNYGKEGKRTDY 1234
             GR Q            ++A+ FW   F++   +  E+F+KEY Y  RHNYG EG R +Y
Sbjct: 353  YGRQQLSLFLKGIGLSADEALKFWSEAFTRNGNMTMEKFNKEYRYSFRHNYGLEGNRINY 412

Query: 1235 TPYSCQKIISAT-PGVGDHHGCPYRHFGEENLRAALNNMGVSGNALEGILDKVKNRHYQL 1411
             P+ C  I+S   PG GD+HGCP+R +  E L A L +M ++   +  +LD  +   Y +
Sbjct: 413  KPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYTI 472

Query: 1412 ACTMTFEATHG-------VSCDTGINHPNQYFSESQKVLQAKNQTVQSQ 1537
            ACT  FE TH        +   T I HPN YF  S++ LQ K Q ++ +
Sbjct: 473  ACTKVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQ-LQKKQQKLEKE 520

>Q8NIZ4:PRI2_NEUCR Probable DNA primase large subunit - Neurospora crassa|
          Length = 513

 Score =  235 bits (600), Expect = 4e-61
 Identities = 155/460 (33%), Positives = 227/460 (49%), Gaps = 43/460 (9%)
 Frame = +2

Query: 245  YRVAPQLEVRLEEFELFAIDRLRVLKGISDGLSRGKRPEE----MEKLVSELWKAHMRHQ 412
            Y   P  ++ +E+FE +AIDRLR+L  +     R K P E    M+ L+ +         
Sbjct: 41   YSTPPTADITIEQFEQWAIDRLRILAELEACSFRNKTPAETASHMKPLLDKYLPLDTNSS 100

Query: 413  DPAETL---NKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQRLLMSEF 583
              ++      KD  SHF+LRL +  TE+LR+ F  +E  LFR R   +    +   ++  
Sbjct: 101  SSSQLFAQRQKDHYSHFILRLAFASTEDLRRRFTRVETMLFRMRLNADDGRERAAFINSL 160

Query: 584  QLPYKALPHSEFEAVKDKLSQVA---------RSISQSTSVESVFFKVPFEEVPDLVANR 736
             L ++ +   E   +  +L+  A         +   Q    +  + KV +  VP+LV  R
Sbjct: 161  NLDWETVSDEEKRELAAELAATASFGGYKKGQQQQQQYEEDQQTWCKVSWLRVPELVEQR 220

Query: 737  RVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEALSN 916
            RVFL +GYAYV   +  ++VV++F   + + L LT R   A  +  E DRLTPI+  LS 
Sbjct: 221  RVFLRQGYAYVPAREQQAMVVSEFSSRLERQLELTAR---ALPRLDEDDRLTPILAHLSK 277

Query: 917  AYFGPD-----YSQKTDAAEISPKDIDQLART-SFPLCMRHMLEKLRENHHLKHGGRMQX 1078
             +  PD      S    +A+IS ++ID L     FP CM H+   LR + HLKH GR+Q 
Sbjct: 278  NFITPDASYVGTSSAISSADISARNIDTLVNNHHFPACMSHLHRTLRRDAHLKHYGRLQY 337

Query: 1079 XXXXXXXXXXXEDAVTFWRSEFSQKVGSERFDKEYAYGIRHNYGKEGKRTD-----YTPY 1243
                       E+ + FWR  F+ K+  + F+KEY Y +RH YG  G  ++     Y+PY
Sbjct: 338  TLFLKGIGLNLEECLLFWRQSFN-KITDDTFNKEYRYNVRHTYGDVGGDSNRRGGGYSPY 396

Query: 1244 SCQKIISA-TPGVGDHHGCPYRHFGEENLRAAL-NNMGVSG-NALEGILDKVKNRHYQLA 1414
            SCQKI++   PG G+ HGCPYRHF  ENL+  L   MGV+    L G+ +  + + + +A
Sbjct: 397  SCQKILTEHPPGPGEAHGCPYRHFNMENLQTLLQQGMGVTDRGVLNGVKEDKEKQKFHMA 456

Query: 1415 CTMTFEATHGVSC----DTGIN---------HPNQYFSES 1495
            C   FE  H        D GI          HPN+YF  S
Sbjct: 457  CNRVFEHLHKEELKKAKDEGIMTAAQLETIVHPNEYFKRS 496

>O02334:PRI2_CAEEL DNA primase large subunit - Caenorhabditis elegans|
          Length = 503

 Score =  219 bits (559), Expect = 2e-56
 Identities = 142/443 (32%), Positives = 221/443 (49%), Gaps = 19/443 (4%)
 Frame = +2

Query: 236  LPTYRVAPQLEVRLEEFELFAIDRLRVLKGISD-----GLSRGKRPEEMEKLVSELWKAH 400
            L  Y+  P  ++ L EF+  A++RL++LK   +      L   +  ++  KL        
Sbjct: 41   LQLYQTPPGDDISLTEFDDIAMERLKLLKSFENLKDSVSLYNDEFKDKFRKLCDGTKLIV 100

Query: 401  MRHQDPA------ETLNKDIISHFVLRLVYCRTEELRKWFLSMENTLFRYRFRLESPESQ 562
               Q P       E   +D I HF+LRL +CRT E +KW   +E    R+R R E  +  
Sbjct: 101  FPDQKPPHQEEVYELWRRDNIGHFILRLAFCRTPENQKWLTQIEGDFLRFRLRQEREQVL 160

Query: 563  RLLMSEFQLPYKALPHSEFEAVKDKLSQVARSISQSTSVESVFFKVPFEEVPDLVANRRV 742
               ++      + L ++E +A+ + L + A   +   +    F+KV F +  +L+    V
Sbjct: 161  DSALANVNFTIEKLGYTEKQAMIEDL-EAACQFNLFEAPNKTFYKVDFIDAIELIRRGSV 219

Query: 743  FLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEALSN-A 919
             L KG+AY     +V+++VT+ + N+  A+    R +      +E+ RL P +  LSN A
Sbjct: 220  HLKKGFAYFPFDDLVTILVTKMKNNMMAAMA---RSFKHLAILEEEGRLLPRLSLLSNNA 276

Query: 920  YFGPDYS--QKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXXXX 1093
            Y G DY+  Q   +  ++   ID+L+R SF  CM+ M   LR NHHLK+G R Q      
Sbjct: 277  YSGKDYNGEQPDGSIIVTRHMIDKLSRRSFAPCMKQMHNHLRVNHHLKYGARRQYGLFLK 336

Query: 1094 XXXXXXEDAVTFWRSEFSQKVGSERFDKEYAYGIRHNYGKEGKRTDYTPYSCQKIISAT- 1270
                  ++A+   R EF++K+ S++FDKEY Y IR+ YGKEG+R   T  SC  II    
Sbjct: 337  GIGLSLDEAIAMMRDEFTKKITSDKFDKEYGYNIRYMYGKEGRRVAQTAMSCATIILRNP 396

Query: 1271 PGVGDHHGCPYRHFGEENLRAALNNMGV-SGNALEGILDKVKNRHYQLACTMTFEATHGV 1447
            P   D HGCP+RH  ++ L+  L +  +     +E I +  +   Y  ACT  FE  H +
Sbjct: 397  PSAVDCHGCPFRHSEKQVLKQKLGSDAILKKEQIERIAELAELNQYDKACTRYFEFMHNL 456

Query: 1448 ---SCDTGINHPNQYFSESQKVL 1507
                    I HPNQ++ ESQK++
Sbjct: 457  EEGGLGQLITHPNQFYEESQKIV 479

>O29911:PRIL_ARCFU Probable DNA primase large subunit - Archaeoglobus fulgidus|
          Length = 370

 Score = 42.0 bits (97), Expect = 0.009
 Identities = 35/155 (22%), Positives = 66/155 (42%)
 Frame = +2

Query: 821  SKALVLTNRKWTATIKEQEKDRLTPIVEALSNAYFGPDYSQKTDAAEISPKDIDQLARTS 1000
            +KA VL   +    +K  EK    P+ EA+S A        K ++ + +  D+ ++    
Sbjct: 209  TKAEVLRGLEELLRMKLFEK---VPVSEAVSEAVRELSRKAKRESEKFA-MDLGEVDLNC 264

Query: 1001 FPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXXXXEDAVTFWRSEFSQKVGSERFDKE 1180
             P CMR +L +L+   ++ H  R              ++ +  ++S        +  D++
Sbjct: 265  LPPCMREILSELQRGMNIPHTARFAITSFLLNIGMTVDEIIALFKS------APDFDDEK 318

Query: 1181 YAYGIRHNYGKEGKRTDYTPYSCQKIISATPGVGD 1285
              Y + H  G+ GK  +YT  SC  + + +  V D
Sbjct: 319  TRYQVEHIAGERGKGAEYTSPSCDTMRTYSNCVAD 353

>Q9HN47:PRIL_HALSA Probable DNA primase large subunit - Halobacterium salinarium|
            (Halobacterium halobium)
          Length = 360

 Score = 37.0 bits (84), Expect = 0.30
 Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 2/170 (1%)
 Frame = +2

Query: 746  LSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEALSNAYF 925
            L  G   V  +++ +L+    R  ++  L L+       + +Q  D L   V A+ +A  
Sbjct: 166  LDDGRVPVTDAELDTLIREAIRERVADGLPLS-------VPDQIADALDEPVAAIQDALA 218

Query: 926  GPDYSQKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXX 1105
              D +          ++ID +    FP CM+H+L++++   HL H  R            
Sbjct: 219  DLDLT----------REIDTVVPELFPPCMKHLLDQVQRGDHLPHHARFAITSFLSNVGL 268

Query: 1106 XXEDAVTFWRSEFSQKVGSE--RFDKEYAYGIRHNYGKEGKRTDYTPYSC 1249
              ++ V  +  E +   G E  R+  ++  G       +   T+YT  SC
Sbjct: 269  STDEIVDIY--EVNPGFGEEMTRYQTDHIQG-------DSSPTEYTAPSC 309

>A2SS72:FTHS_METLZ Formate--tetrahydrofolate ligase - Methanocorpusculum labreanum|
            (strain ATCC 43576 / DSM 4855 / Z)
          Length = 560

 Score = 34.7 bits (78), Expect = 1.5
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 890  TPIVE---ALSNAYFGPDYSQKTDAAEISPKDIDQLARTSFPLCM 1015
            TPI E   AL+   +G D    + AA+ + KDID L R++ P+CM
Sbjct: 446  TPIKEKINALATRIYGADGVVYSPAADAAIKDIDALGRSNLPICM 490

>Q8TVJ5:PRIL_METKA Probable DNA primase large subunit - Methanopyrus kandleri|
          Length = 406

 Score = 34.3 bits (77), Expect = 1.9
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +2

Query: 977  IDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXXXXEDAVTFWRSEFSQKV 1156
            +++ A   FP C+R +L + +E  +L H  R              +  V  + +      
Sbjct: 291  VEKGAGGRFPPCIRELLRRAQEGENLPHEARFALAAFLVNVGWDVDRVVEVFSN------ 344

Query: 1157 GSERFDKEYA-YGIRHNYGKEGKRTDYTPYSCQKI 1258
                FD+E   Y +RH  G+ G  T Y P +C K+
Sbjct: 345  -LPDFDEERTQYQVRHIAGEVGGGTRYLPPNCDKM 378

>Q97BA1:PRIL_THEVO Probable DNA primase large subunit - Thermoplasma volcanium|
          Length = 327

 Score = 33.9 bits (76), Expect = 2.5
 Identities = 33/172 (19%), Positives = 71/172 (41%), Gaps = 1/172 (0%)
 Frame = +2

Query: 752  KGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIKEQEKDRLTPIVEALSNAYFGP 931
            KG  Y      + ++   F  N+ K +   ++   + +   + D +  + E         
Sbjct: 145  KGIVYCQKDVAIKILRESFVSNMFKVIDSIDQTTASPVLSDQTDSINELRE--------- 195

Query: 932  DYSQKTDAAEISPKDIDQLARTSFPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXXXX 1111
             + +K+  A+++   I +    +FP CM+ ++  L E  ++ H GR+             
Sbjct: 196  -FYKKSVYAKLT---IGRGNTKAFPPCMKEIIRNLHEGINVPHMGRLAIASFLHKVGYTE 251

Query: 1112 EDAVTFWRSEFSQKVGSERFDKEYA-YGIRHNYGKEGKRTDYTPYSCQKIIS 1264
            ++ V ++R+       +  FD+    Y I+H  G E    +Y+P  C+ + S
Sbjct: 252  DEIVEYFRN-------APDFDESITRYQIKHLSG-EISGVEYSPPKCETMRS 295

>Q9HJD1:PRIL_THEAC Probable DNA primase large subunit - Thermoplasma acidophilum|
          Length = 340

 Score = 33.9 bits (76), Expect = 2.5
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +2

Query: 1001 FPLCMRHMLEKLRENHHLKHGGRMQXXXXXXXXXXXXEDAVTFWRSEFSQKVGSERFDKE 1180
            FP CM+ +++ L    ++ H GR+             ++ V ++R+       +  FD+ 
Sbjct: 226  FPPCMKEIIKNLESGVNVSHMGRLALASFLHKAGYSEDEIVPYFRN-------APDFDEN 278

Query: 1181 YA-YGIRHNYGKEGKRTDYTPYSCQKIIS 1264
               Y I+H  G E   T+YTP  C+ + S
Sbjct: 279  ITRYQIKHISG-EISGTEYTPPKCETMRS 306

>P57491:PYRG_BUCAI CTP synthase - Buchnera aphidicola subsp. Acyrthosiphon pisum|
           (Acyrthosiphon pisum symbiotic bacterium)
          Length = 545

 Score = 33.5 bits (75), Expect = 3.3
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 582 NSLIRSLCDSGLS-RRKRYRNSVFSMERNHLRNSSVLQYTRRSTK*DIMSLFKVSAGSWC 406
           NSL R L +  +   R R+R  V ++    +  +  LQ T RS K +++ + ++S   W 
Sbjct: 452 NSLSRKLYNQEIIIERHRHRYEVNNLLFKKIEAAG-LQVTGRSQKNNVVEIIELSNHPWF 510

Query: 405 LICAFHNSLTS 373
           L C FH   TS
Sbjct: 511 LACQFHPEFTS 521

>P33515:POLG_MCFA Genome polyprotein [Contains: Capsid protein C - Mosquito cell fusing|
            agent (CFA flavivirus)
          Length = 3341

 Score = 33.5 bits (75), Expect = 3.3
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +2

Query: 704  FEEVPDLVANRRVFLSKGYAYVAMSQVVSLVVTQFRCNISKALVLTNRKWTATIK----- 868
            F+E+P      R  L  G+A VA++ + S+VV      +  A++    KW AT K     
Sbjct: 2288 FDEIPF-----RAVLPSGFAIVAIASLPSVVVGLLAAGVFMAIMYCQNKWNATPKILTAL 2342

Query: 869  ---EQEKDRLTPI 898
               +Q  DR T I
Sbjct: 2343 DARDQRHDRPTEI 2355

>Q5F4B2:SWP70_CHICK Switch-associated protein 70 - Gallus gallus (Chicken)|
          Length = 586

 Score = 32.7 bits (73), Expect = 5.6
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
 Frame = +2

Query: 338 LSRGKRPEEMEKLVSELWKAHMRHQDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMEN 517
           L R +  EEM K + E  +   + +   ET+ K  +   +L     +  EL KW L  + 
Sbjct: 416 LQRVRELEEMYKQLQEALEVEKQARQDEETVRK--LQARLLEEESAKRAELEKWHLQQQQ 473

Query: 518 TLFRYRFRLESPESQRLLMSE-FQLPYKALPHSE---------FEAVKDKLSQVARS 658
           T+       +  E+QR++  +  Q+  + L   E         +E VK KL   A +
Sbjct: 474 TIQMTEAEKQELENQRMIKEQALQVAMQQLEQLELERKEALEQYEEVKKKLETAANN 530

>P07974:HEMA_INCTA Hemagglutinin-esterase-fusion glycoprotein precursor - Influenza C|
            virus (strain C/Taylor/1233/1947)
          Length = 642

 Score = 32.0 bits (71), Expect = 9.6
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +2

Query: 1652 RSNLLMFSLICVPLGFGEFQLPIHGVASCTTISNRRETYLLSYNSCQNQSESRLIWFLVI 1831
            + NL  F+L   P  FG ++  +H VASC  I + +E Y  +   C N       +F VI
Sbjct: 199  KENLAFFTL---PTQFGTYECKLHLVASCYFIYDSKEVY--NKRGCDN-------YFQVI 246

Query: 1832 L*SSG 1846
              SSG
Sbjct: 247  YDSSG 251

>P07970:HEMA_INCMI Hemagglutinin-esterase-fusion glycoprotein precursor - Influenza C|
            virus (strain C/Mississippi/1980)
          Length = 641

 Score = 32.0 bits (71), Expect = 9.6
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +2

Query: 1652 RSNLLMFSLICVPLGFGEFQLPIHGVASCTTISNRRETYLLSYNSCQNQSESRLIWFLVI 1831
            + NL  F+L   P  FG ++  +H VASC  I + +E Y  +   C N       +F VI
Sbjct: 198  KENLAFFTL---PTQFGTYECKLHLVASCYFIYDSKEVY--NKRGCDN-------YFQVI 245

Query: 1832 L*SSG 1846
              SSG
Sbjct: 246  YDSSG 250

>P68762:HEMA_INCAA Hemagglutinin-esterase-fusion glycoprotein precursor - Influenza C|
            virus (strain C/Ann Arbor/1/1950)
          Length = 655

 Score = 32.0 bits (71), Expect = 9.6
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +2

Query: 1652 RSNLLMFSLICVPLGFGEFQLPIHGVASCTTISNRRETYLLSYNSCQNQSESRLIWFLVI 1831
            + NL  F+L   P  FG ++  +H VASC  I + +E Y  +   C N       +F VI
Sbjct: 212  KENLAFFTL---PTQFGTYECKLHLVASCYFIYDSKEVY--NKRGCDN-------YFQVI 259

Query: 1832 L*SSG 1846
              SSG
Sbjct: 260  YDSSG 264


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 330,477,201
Number of extensions: 7077802
Number of successful extensions: 18051
Number of sequences better than 10.0: 21
Number of HSP's gapped: 17998
Number of HSP's successfully gapped: 21
Length of query: 649
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 529
Effective length of database: 67,771,039
Effective search space: 35850879631
Effective search space used: 35850879631
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)