>Q8L6Y4:EMF2_ARATH Polycomb protein EMBRYONIC FLOWER 2 - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 631
 Score =  472 bits (1215), Expect(2) = e-139
 Identities = 265/589 (44%), Positives = 346/589 (58%), Gaps = 18/589 (3%)
 Frame = +3

Query: 438  YNIIQRRAIRNPAFLQRCLHYKIHASRKKRIQITVSLSRGTNTELPEQNVFPLYVLLATP 617
            YNIIQRRAIRNP FLQRCLHYKI A  K+RIQ+TV LS   +  +  Q +FPLY+LLA  
Sbjct: 52   YNIIQRRAIRNPLFLQRCLHYKIEAKHKRRIQMTVFLSGAIDAGVQTQKLFPLYILLARL 111

Query: 618  TTNISLEGHSPIYRFSRACLLTSFSECGSKGRTKATFTIPDIKNLST-SRACNLNIILIS 794
             +   +  +S +YRFSRAC+LT         + +A F +PD+  L+  +++ +L I+ IS
Sbjct: 112  VSPKPVAEYSAVYRFSRACILTGGLGVDGVSQAQANFLLPDMNRLALEAKSGSLAILFIS 171

Query: 795  CVSEGQVEENVGEHNCSVNHVEGSALQKLEGKCFWGKIPIDLLGSSLENCVTLNLGHTVE 974
                   +  +        ++ G         C W KIP+  L +S +    ++LG  V+
Sbjct: 172  FAGAQNSQFGIDSGKIHSGNIGGH--------CLWSKIPLQSLYASWQKSPNMDLGQRVD 223

Query: 975  LASAVSMSPSFLEPKFMEQDSCLTFC--SHKVDATGSYQLQVGISAQEAGARDMXXXXXX 1148
              S V M P F++ K M ++ C++    S+ + ++   Q+QV ISA+E G+ +       
Sbjct: 224  TVSLVEMQPCFIKLKSMSEEKCVSIQVPSNPLTSSSPQQVQVTISAEEVGSTEKSPYSSF 283

Query: 1149 XXXXXXXXXXXLPHIIRLRAGNVLFNFKYYNNTMQKTEVTEDFACPFCLVKCGSYKGLGC 1328
                       L  IIRLR GNV+FN++YYNN +QKTEVTEDF+CPFCLVKC S+KGL  
Sbjct: 284  SYNDISSSS--LLQIIRLRTGNVVFNYRYYNNKLQKTEVTEDFSCPFCLVKCASFKGLRY 341

Query: 1329 HLNSSHDLFHFEFWISEECQAVNVSLKTDVWRTELVAEGVDPRHQTFSYXXXXXXXXXXG 1508
            HL S+HDL +FEFW++EE QAVNVSLKT+   +++  + VDP+ QTF +           
Sbjct: 342  HLPSTHDLLNFEFWVTEEFQAVNVSLKTETMISKVNEDDVDPKQQTFFFSSKKFRRRRQK 401

Query: 1509 MLGTTAEKISHVHPHIMDSDSPEDAQAVSE-------GDFVQR----EEDDISAPRASVD 1655
                ++ +  H+       D  +DA +V         G   +R    E      P  S  
Sbjct: 402  SQVRSSRQGPHLGLGCEVLDKTDDAHSVRSEKSRIPPGKHYERIGGAESGQRVPPGTSPA 461

Query: 1656 PAQSLHD----SNLSPPTVLQFGKTRKLSAERADPRNRQLLQKRQFFHSHRAQPMALEQV 1823
              QS  D     +++  T+LQF KTRK+S ER+D RNR LLQKRQFFHSHRAQPMALEQV
Sbjct: 462  DVQSCGDPDYVQSIAGSTMLQFAKTRKISIERSDLRNRSLLQKRQFFHSHRAQPMALEQV 521

Query: 1824 FSXXXXXXXXXXXXXXXXXXXMLDDFVDVTNDEKLIMHMWNSFVRKQRVLADGHIPWACE 2003
             S                   MLDDFVDVT DEK +MHMWNSFVRKQRVLADGHIPWACE
Sbjct: 522  LSDRDSEDEVDDDVADFEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACE 581

Query: 2004 AFSRLHGKHLVQNPPLLWSWRFLMIKLWNHSLLDARAMNVCGTILQGYQ 2150
            AFSRLHG  +V+ P L+W WR  M+KLWNH LLDAR MN C T L+  Q
Sbjct: 582  AFSRLHGPIMVRTPHLIWCWRVFMVKLWNHGLLDARTMNNCNTFLEQLQ 630



 Score = 45.4 bits (106), Expect(2) = e-139
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +2

Query: 323 SYPQSADQMRQQQLRARLSPDEQLAAEESFALYCKPVEL 439
           S  +S +QM  +  R R+S +E++AAEES A YCKPVEL
Sbjct: 13  SCSRSTEQMCHEDSRLRISEEEEIAAEESLAAYCKPVEL 51

>Q8W5B1:VRN2_ARATH Polycomb group protein VERNALIZATION 2 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 440

 Score =  255 bits (652), Expect = 5e-67
 Identities = 151/341 (44%), Positives = 186/341 (54%), Gaps = 19/341 (5%)
 Frame = +3

Query: 1209 GNVLFNFKYYNNTMQKTEVTEDFACPFCLVKCGSYKGLGCHLNSSHDLFHFEFWISEECQ 1388
            G V+FN+K  NNT+Q+TEV ED +CPFC + CGS+KGL  HLNSSHDLF FEF + EE Q
Sbjct: 66   GMVVFNYKDCNNTLQRTEVREDCSCPFCSMLCGSFKGLQFHLNSSHDLFEFEFKLLEEYQ 125

Query: 1389 AVNVSLKTDVWRTELVAEGVDP-RHQTFSYXXXXXXXXXXGMLGTTAEKISHVHPHIMDS 1565
             VNVS+K + +  E   EG D  + + FS           G    T      +    +  
Sbjct: 126  TVNVSVKLNSFIFE--EEGSDDDKFEPFSLCSKPRKRRQRGGRNNTRR----LKVCFLPL 179

Query: 1566 DSPEDAQAVSEGDFVQREED-DISAPRASVDPAQSLHDSNLSPP---------------- 1694
            DSP  A     G  +  + +  +  P A+    Q    SN+ P                 
Sbjct: 180  DSPSLANGTENGIALLNDGNRGLGYPEATELAGQFEMTSNIPPAIAHSSLDAGAKVILTT 239

Query: 1695 -TVLQFGKTRKLSAERADPRNRQLLQKRQFFHSHRAQPMALEQVFSXXXXXXXXXXXXXX 1871
              V+   KTRKLSAER++ R+  LLQKRQF+HSHR QPMALEQV S              
Sbjct: 240  EAVVPATKTRKLSAERSEARSHLLLQKRQFYHSHRVQPMALEQVMSDRDSEDEVDDDVAD 299

Query: 1872 XXXXXMLDDFVDVTNDEKLIMHMWNSFVRKQRVLADGHIPWACEAFSRLHGKHLVQNPPL 2051
                 MLDDFVDV  DEK  MH+WNSFVRKQRV+ADGHI WACE FSR + K L     L
Sbjct: 300  FEDRQMLDDFVDVNKDEKQFMHLWNSFVRKQRVIADGHISWACEVFSRFYEKELHCYSSL 359

Query: 2052 LWSWRFLMIKLWNHSLLDARAMNVCGTILQGYQNESSDPKN 2174
             W WR  +IKLWNH L+D+  +N C TIL+  +N S    N
Sbjct: 360  FWCWRLFLIKLWNHGLVDSATINNCNTILENCRNTSVTNNN 400



 Score = 42.7 bits (99), Expect(2) = 1e-07
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +3

Query: 417 CTASRLSYNIIQRRAIRNPAFLQRCLHYKIHASRKKRIQIT 539
           C   RL YNI   R++ NP+FL RCL+YKI A RK++ + T
Sbjct: 26  CKPVRL-YNIFHLRSLGNPSFLPRCLNYKIGAKRKRKSRST 65



 Score = 35.4 bits (80), Expect(2) = 1e-07
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 347 MRQQQLRARLSPDEQLAAEESFALYCKPVEL 439
           M +Q  RA+ SP+E ++ +E+  +YCKPV L
Sbjct: 1   MCRQNCRAKSSPEEVISTDENLLIYCKPVRL 31

>Q9ZNT9:FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 - Arabidopsis|
            thaliana (Mouse-ear cress)
          Length = 632

 Score =  129 bits (324), Expect = 6e-29
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 14/228 (6%)
 Frame = +3

Query: 1518 TTAEKISHVHPHIMDSD--SPEDAQAVSEGDFVQREEDDISAPR------------ASVD 1655
            T AE       H+ D +  S   A +  +    ++ +D+I +P             A+  
Sbjct: 388  TIAESSEPKVRHVNDDNVSSTPRAHSSKKNKSTRKNDDNIPSPPKTRSSKKTSNILATTQ 447

Query: 1656 PAQSLHDSNLSPPTVLQFGKTRKLSAERADPRNRQLLQKRQFFHSHRAQPMALEQVFSXX 1835
            PA++      S P V +  + ++L AER + +  + L+ RQF+HS   QP+  EQV S  
Sbjct: 448  PAKA----EPSEPKVTRVSRRKELHAERCEAKRLERLKGRQFYHSQTMQPITFEQVMSNE 503

Query: 1836 XXXXXXXXXXXXXXXXXMLDDFVDVTNDEKLIMHMWNSFVRKQRVLADGHIPWACEAFSR 2015
                              L+  V V+ +EK  M++WN FVRKQRV+ADGH+PWACE F++
Sbjct: 504  DSENETDDYALDISERLRLERLVGVSKEEKRYMYLWNIFVRKQRVIADGHVPWACEEFAK 563

Query: 2016 LHGKHLVQNPPLLWSWRFLMIKLWNHSLLDARAMNVCGTILQGYQNES 2159
            LH + +  +    W WR   IKLWN+ L+ A+  + C TIL    +E+
Sbjct: 564  LHKEEMKNSSSFDWWWRMFRIKLWNNGLICAKTFHKCTTILLSNSDEA 611



 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
 Frame = +3

Query: 1254 KTEVTEDFACPFCLVKCGSYKGLGCHLNSSHDLFHFEFWISEECQA--VNVSLKTDVWRT 1427
            K EV E+F+CPFCL+ CG ++GL  HL SSHD F FEF+ +E+     V+VS+K+D  + 
Sbjct: 4    KAEVVENFSCPFCLIPCGGHEGLQLHLKSSHDAFKFEFYRAEKDHGPEVDVSVKSDTIKF 63

Query: 1428 ELVAEGV-DPRHQTFSYXXXXXXXXXXGMLGTTAEKISHVHPHIMDSDSPEDAQAVSEGD 1604
             ++ + V +P+    ++                 +K++ +   +M+ D  +D    +E D
Sbjct: 64   GVLKDDVGNPQLSPLTFCSKNRNQRRQRDDSNNVKKLNVL---LMELDL-DDLPRGTEND 119

Query: 1605 FVQREEDDISAP 1640
                 +D++S+P
Sbjct: 120  STHVNDDNVSSP 131

>Q80U70:SUZ12_MOUSE Polycomb protein Suz12 - Mus musculus (Mouse)|
          Length = 741

 Score = 47.0 bits (110), Expect = 4e-04
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +3

Query: 1215 VLFNFKYYNNTMQKTEVTEDFACPFCLVKCGSYKGLGCHLNSSHDLFHFEFWISEECQAV 1394
            + + F Y NNT Q+TE  +D  CP+C + C     L  HL   H  F F +    +   +
Sbjct: 430  IFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARI 489

Query: 1395 NVSL 1406
            +VS+
Sbjct: 490  DVSI 493



 Score = 41.2 bits (95), Expect = 0.021
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
 Frame = +3

Query: 1890 LDDFVDVTNDEKLIMHMWNSFVRKQRVLADGHIPWACEAFSRLHGKHLVQNPPLLWSWRF 2069
            +++F DV   EK +M +WN  V K   +AD  +  AC  F   +G+ +++   L  ++  
Sbjct: 602  IEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIKK-NLCRNFML 660

Query: 2070 LMIKLWNHSLLDARAMNVCGTILQGYQ-----NESSDPKN 2174
             ++ + + +L+   +++   T L+  Q      ES+ P N
Sbjct: 661  HLVSMHDFNLISIMSIDKAVTKLREMQQKLEKGESATPSN 700

>Q15022:SUZ12_HUMAN Polycomb protein SUZ12 - Homo sapiens (Human)|
          Length = 739

 Score = 47.0 bits (110), Expect = 4e-04
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +3

Query: 1215 VLFNFKYYNNTMQKTEVTEDFACPFCLVKCGSYKGLGCHLNSSHDLFHFEFWISEECQAV 1394
            + + F Y NNT Q+TE  +D  CP+C + C     L  HL   H  F F +    +   +
Sbjct: 428  IFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARI 487

Query: 1395 NVSL 1406
            +VS+
Sbjct: 488  DVSI 491



 Score = 41.2 bits (95), Expect = 0.021
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
 Frame = +3

Query: 1890 LDDFVDVTNDEKLIMHMWNSFVRKQRVLADGHIPWACEAFSRLHGKHLVQNPPLLWSWRF 2069
            +++F DV   EK +M +WN  V K   +AD  +  AC  F   +G+ +++   L  ++  
Sbjct: 600  IEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIKK-NLCRNFML 658

Query: 2070 LMIKLWNHSLLDARAMNVCGTILQGYQ-----NESSDPKN 2174
             ++ + + +L+   +++   T L+  Q      ES+ P N
Sbjct: 659  HLVSMHDFNLISIMSIDKAVTKLREMQQKLEKGESASPAN 698

>Q9NJG9:SUZ12_DROME Polycomb protein Su(z)12 - Drosophila melanogaster (Fruit fly)|
          Length = 900

 Score = 46.6 bits (109), Expect = 5e-04
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +3

Query: 1215 VLFNFKYYNNTMQKTEVTEDFACPFCLVKCGSYKGLGCHLNSSHDLFHFEF 1367
            +++NF Y NNT Q+TE T++  CP+C + C     L  HL   H  F+F +
Sbjct: 391  IVYNFMYSNNTRQQTEYTQELNCPWCGLDCLRLYALLKHLKLCHARFNFTY 441



 Score = 44.7 bits (104), Expect = 0.002
 Identities = 27/86 (31%), Positives = 43/86 (50%)
 Frame = +3

Query: 1887 MLDDFVDVTNDEKLIMHMWNSFVRKQRVLADGHIPWACEAFSRLHGKHLVQNPPLLWSWR 2066
            M+D+F DV   EK +M +WN  V +   + D  +P ACE F    G  +V+   L  ++ 
Sbjct: 563  MIDEFSDVNEGEKELMKLWNLHVMRHGFVGDCQLPIACEMFLDAKGTEIVRK-NLYRNFI 621

Query: 2067 FLMIKLWNHSLLDARAMNVCGTILQG 2144
              M  L+++ L+ A  +      LQG
Sbjct: 622  LHMCSLFDYGLIAAETVYKTVQKLQG 647

>Q9BRD0:BUD13_HUMAN BUD13 homolog - Homo sapiens (Human)|
          Length = 619

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 1584 QAVSEGDFVQREEDDISAPRASVDPAQSLHDSNLSPPTVLQFGKTRKLSAERADPRNRQ 1760
            Q  S+GD  +  + D+S+PR    P     DS+LSPP      + R   ++ + PR RQ
Sbjct: 341  QLDSKGDCQKATDSDLSSPRHKQSPGHQDSDSDLSPPR--NRPRHRSSDSDLSPPRRRQ 397

>O95551:TTRAP_HUMAN TRAF and TNF receptor-associated protein - Homo sapiens (Human)|
          Length = 362

 Score = 33.9 bits (76), Expect = 3.4
 Identities = 27/93 (29%), Positives = 49/93 (52%)
 Frame = +1

Query: 1768 RNVSFSILTGHSQWHWNKFSRIVIVKMKLMMTSQILKIDGCLMILLMSRMMRNLLCICGI 1947
            R+ ++ I+TGH + +   F+ I++ K ++ + SQ +      +    ++MMRNLLC+  +
Sbjct: 164  RSSNYEIITGHEEGY---FTAIMLKKSRVKLKSQEI------IPFPSTKMMRNLLCV-HV 213

Query: 1948 HLFGNKGC*LMVIFLGPVRHSPGFMENILYRIL 2046
            ++ GN+ C LM   L   R       N L  +L
Sbjct: 214  NVSGNELC-LMTSHLESTRGHAAERMNQLKMVL 245

>Q08296:PPOF_SOLLC Polyphenol oxidase F, chloroplast precursor - Solanum lycopersicum|
            (Tomato) (Lycopersicon esculentum)
          Length = 585

 Score = 33.5 bits (75), Expect = 4.4
 Identities = 23/95 (24%), Positives = 34/95 (35%)
 Frame = +3

Query: 1521 TAEKISHVHPHIMDSDSPEDAQAVSEGDFVQREEDDISAPRASVDPAQSLHDSNLSPPTV 1700
            T E I H   HI   DSP        G+F            A +DP    H +N+     
Sbjct: 320  TIENIPHTPVHIWTGDSPRQGHGEDMGNFYS----------AGLDPLFYCHHANVD---- 365

Query: 1701 LQFGKTRKLSAERADPRNRQLLQKRQFFHSHRAQP 1805
              + + + +  +R D  N+  L    FF+     P
Sbjct: 366  RMWNEWKLIGGKRRDLSNKDWLNSEFFFYDENRNP 400

>Q8BW70:UBP38_MOUSE Ubiquitin carboxyl-terminal hydrolase 38 - Mus musculus (Mouse)|
          Length = 1042

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 22/87 (25%), Positives = 35/87 (40%)
 Frame = +3

Query: 468 NPAFLQRCLHYKIHASRKKRIQITVSLSRGTNTELPEQNVFPLYVLLATPTTNISLEGHS 647
           N  F+   L    H+  +K + I   +  G    +   +V  L+ LL      +  E   
Sbjct: 81  NKTFVLGLLQQGYHSVDRKDVAILDYIHNGLKLIMSCPSVLDLFSLLQVEVLRMVCERPE 140

Query: 648 PIYRFSRACLLTSFSECGSKGRTKATF 728
           P+     + LLT F +C  KG+   TF
Sbjct: 141 PVLCARLSDLLTDFVQCVPKGKLSVTF 167

>Q8NB14:UBP38_HUMAN Ubiquitin carboxyl-terminal hydrolase 38 - Homo sapiens (Human)|
          Length = 1042

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 23/87 (26%), Positives = 35/87 (40%)
 Frame = +3

Query: 468 NPAFLQRCLHYKIHASRKKRIQITVSLSRGTNTELPEQNVFPLYVLLATPTTNISLEGHS 647
           N  F+   LH   H+  +K + I   +  G    +   +V  L+ LL      +  E   
Sbjct: 81  NKTFVLGLLHQGYHSLDRKDVAILDYIHNGLKLIMSCPSVLDLFSLLQVEVLRMVCERPE 140

Query: 648 PIYRFSRACLLTSFSECGSKGRTKATF 728
           P      + LLT F +C  KG+   TF
Sbjct: 141 PQLCARLSDLLTDFVQCIPKGKLSITF 167

>Q06355:PPOB_SOLTU Catechol oxidase B, chloroplast precursor - Solanum tuberosum|
            (Potato)
          Length = 588

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 23/95 (24%), Positives = 35/95 (36%)
 Frame = +3

Query: 1521 TAEKISHVHPHIMDSDSPEDAQAVSEGDFVQREEDDISAPRASVDPAQSLHDSNLSPPTV 1700
            T E I H   HI   DSP      + G+F            A +DP    H +N+     
Sbjct: 323  TIENIPHTPVHIWTGDSPRQKNGENMGNFYS----------AGLDPIFYCHHANVD---- 368

Query: 1701 LQFGKTRKLSAERADPRNRQLLQKRQFFHSHRAQP 1805
              + + + +  +R D  N+  L    FF+     P
Sbjct: 369  RMWDEWKLIGGKRRDLSNKDWLNSEFFFYDENRNP 403

>P79703:JUNB_CYPCA Transcription factor jun-B - Cyprinus carpio (Common carp)|
          Length = 308

 Score = 32.7 bits (73), Expect = 7.5
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 1533 ISHVHPHIMDSDSPEDAQAVS-EGDFVQREEDDISAPRASVDPAQSLHDSNLSPPT-VLQ 1706
            IS++ PH+  S  PE+       G   QR       P+   D    +H S+ SPPT  + 
Sbjct: 168  ISYLPPHVQQSQHPENTHGFQHSGVLPQRYVPLKEEPQTVPD----MHSSDCSPPTSPID 223

Query: 1707 FGKTRKLSAERADPRNR 1757
                 ++ AER   RNR
Sbjct: 224  MENQERIKAERKRLRNR 240

>O74137:EPD2_CANMA Protein EPD2 precursor - Candida maltosa (Yeast)|
          Length = 549

 Score = 32.3 bits (72), Expect = 9.8
 Identities = 23/63 (36%), Positives = 28/63 (44%)
 Frame = -1

Query: 1762 SCRFLGSARSADSFLVFPNCSTVGGERLLSCNDWAGSTEARGAEISSSSLCTKSPSDTAW 1583
            +C F GSA   D+     +CS  GG  L S      S+  RG   SS S  + S S T  
Sbjct: 455  ACDFAGSASINDNASASTSCSAAGGRGLQS---GRRSSTTRGGSSSSRSSSSSSSSSTGS 511

Query: 1582 ASS 1574
             SS
Sbjct: 512  GSS 514


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 428,937,152
Number of extensions: 9254878
Number of successful extensions: 23889
Number of sequences better than 10.0: 14
Number of HSP's gapped: 23839
Number of HSP's successfully gapped: 21
Length of query: 837
Length of database: 100,686,439
Length adjustment: 122
Effective length of query: 715
Effective length of database: 67,222,449
Effective search space: 48064051035
Effective search space used: 48064051035
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)