| Clone Name | FLbaf71n16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 188 bits (95), Expect = 4e-44 Identities = 244/293 (83%), Gaps = 3/293 (1%) Strand = Plus / Plus Query: 836 gtgaaacctatactgaagaggaaggaggagcaagccgattcaaaaccaaggaagcgtgtg 895 |||||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||| Sbjct: 19620431 gtgaaacctatactgaagcggaaggaggagcaaggcgattcaaagccaaggaaacgtgtc 19620490 Query: 896 aggtttaatgctgatgttaaagaacaaccagtggagcttcttgaacgtgatgaagattct 955 | |||| |||||||||||| || ||| | | ||||| | ||||| |||||||||||| Sbjct: 19620491 aagtttgctgctgatgttaaggaccaatcggcagagctgcctgaacaggatgaagattct 19620550 Query: 956 cccatggttcctcagtccatggatgtggtcacaacaaagggcaactcctccacgcgatct 1015 |||||||||||||| ||||||||| |||||| | |||| |||| ||||| | |||| Sbjct: 19620551 cccatggttcctcaatccatggatttggtcatagggaagg---actcatccactccatct 19620607 Query: 1016 gaggctcgtggggttccagactatgttaggaacccttcaaagtacacatgttacactcta 1075 ||| ||| ||||||||| |||||||||| ||||||| ||||||| ||| |||||||||| Sbjct: 19620608 gagtctcctggggttcctgactatgttaagaaccctgcaaagtatacacgttacactctg 19620667 Query: 1076 gagacaccagagagtactgatgaatctaataggagagctcttgcagacttgca 1128 || || ||||| ||| |||||| |||| ||||||||| |||| ||| |||| Sbjct: 19620668 gacactccagaatgtaacgatgaaactaacaggagagcttttgccgacctgca 19620720 Score = 129 bits (65), Expect = 3e-26 Identities = 116/133 (87%) Strand = Plus / Plus Query: 531 aggaagaggaggacaaatatgatagagcggcatttggcagagaggatgctgcagatcgtg 590 ||||||| |||||||| ||||| |||| ||||||||| |||||||||||| || |||| Sbjct: 19620126 aggaagaagaggacaagtatgacagagaggcatttggtagagaggatgcttttgaccgtg 19620185 Query: 591 tgtacatgagtgaaatcatggatgatggcatgaatatgagtatcaatactgtagtgcctg 650 | ||||||| ||||||||||||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 19620186 tatacatgaatgaaatcatggatgatggcattaacatgagcatcaacactgtggtgcctg 19620245 Query: 651 acctccttgatga 663 || |||||||||| Sbjct: 19620246 acatccttgatga 19620258 Score = 111 bits (56), Expect = 8e-21 Identities = 134/160 (83%) Strand = Plus / Plus Query: 140 ggggaggggttcgaagagcgggtgaagcggctcttcgggtcgcatctcttcggcgacgtc 199 |||||||||||||| ||||||||||||||||| ||||||||| || |||| |||||| Sbjct: 19619107 ggggaggggttcgaggagcgggtgaagcggctgttcgggtcgaggctgttcgacgacgtg 19619166 Query: 200 ccgagctcctccttcccggcagcttcctggtccgtcgccgccggagatgttgagcgccag 259 ||| | || ||||||||||| || || ||||| || || ||||| || || ||||| | | Sbjct: 19619167 ccggggtcgtccttcccggcggcgtcgtggtcggtggcggccggggacgtggagcggcgg 19619226 Query: 260 cgctgggcgcgtccgtcggaggcccgcgacgaggaggagg 299 || |||||| |||||||||||||||||||||||||||| Sbjct: 19619227 cggtgggcgaagccgtcggaggcccgcgacgaggaggagg 19619266 Score = 60.0 bits (30), Expect = 3e-05 Identities = 139/173 (80%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 1180 tgagattcctagttcagtcacattcatccctaggaagaagtcagttgatgccatggtggt 1239 |||||| |||| |||||| || |||||||| |||||||| || | ||||| ||| || Sbjct: 19620766 tgagatacctacttcagttacgttcatcccacggaagaagacaatcgatgcaatgacagt 19620825 Query: 1240 ggatgagggccccaaatttagtgacgcaaacccatctctcattagtgcagcagcagcagt 1299 |||||||| ||||||| | ||| |||||| ||||||||||| || || |||| || Sbjct: 19620826 agatgagggtcccaaatccaatgatgcaaactcatctctcattggtctggcggcag--gt 19620883 Query: 1300 agcctctgacggaactgaccaatgtgagatggatgaagatgaccctaaagcat 1352 |||||||| | |||||| ||||| || |||||||||||||| |||||||||| Sbjct: 19620884 -gcctctgatgaaactgagcaatgcgaaatggatgaagatgatcctaaagcat 19620935 Score = 58.0 bits (29), Expect = 1e-04 Identities = 35/37 (94%) Strand = Plus / Plus Query: 497 gtttcgatcggcctcgacccgactctggatcgggagg 533 ||||| |||||||||||||||||||||||||| |||| Sbjct: 19619497 gtttccatcggcctcgacccgactctggatcgagagg 19619533 Score = 44.1 bits (22), Expect = 1.6 Identities = 31/34 (91%) Strand = Plus / Plus Query: 338 tccgcgttttacgatgccaacgggtgcctccgcg 371 |||||||| ||||| | ||||||||||||||||| Sbjct: 19619314 tccgcgttctacgacgacaacgggtgcctccgcg 19619347
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 188 bits (95), Expect = 4e-44 Identities = 244/293 (83%), Gaps = 3/293 (1%) Strand = Plus / Plus Query: 836 gtgaaacctatactgaagaggaaggaggagcaagccgattcaaaaccaaggaagcgtgtg 895 |||||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||| Sbjct: 71157 gtgaaacctatactgaagcggaaggaggagcaaggcgattcaaagccaaggaaacgtgtc 71216 Query: 896 aggtttaatgctgatgttaaagaacaaccagtggagcttcttgaacgtgatgaagattct 955 | |||| |||||||||||| || ||| | | ||||| | ||||| |||||||||||| Sbjct: 71217 aagtttgctgctgatgttaaggaccaatcggcagagctgcctgaacaggatgaagattct 71276 Query: 956 cccatggttcctcagtccatggatgtggtcacaacaaagggcaactcctccacgcgatct 1015 |||||||||||||| ||||||||| |||||| | |||| |||| ||||| | |||| Sbjct: 71277 cccatggttcctcaatccatggatttggtcatagggaagg---actcatccactccatct 71333 Query: 1016 gaggctcgtggggttccagactatgttaggaacccttcaaagtacacatgttacactcta 1075 ||| ||| ||||||||| |||||||||| ||||||| ||||||| ||| |||||||||| Sbjct: 71334 gagtctcctggggttcctgactatgttaagaaccctgcaaagtatacacgttacactctg 71393 Query: 1076 gagacaccagagagtactgatgaatctaataggagagctcttgcagacttgca 1128 || || ||||| ||| |||||| |||| ||||||||| |||| ||| |||| Sbjct: 71394 gacactccagaatgtaacgatgaaactaacaggagagcttttgccgacctgca 71446 Score = 129 bits (65), Expect = 3e-26 Identities = 116/133 (87%) Strand = Plus / Plus Query: 531 aggaagaggaggacaaatatgatagagcggcatttggcagagaggatgctgcagatcgtg 590 ||||||| |||||||| ||||| |||| ||||||||| |||||||||||| || |||| Sbjct: 70852 aggaagaagaggacaagtatgacagagaggcatttggtagagaggatgcttttgaccgtg 70911 Query: 591 tgtacatgagtgaaatcatggatgatggcatgaatatgagtatcaatactgtagtgcctg 650 | ||||||| ||||||||||||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 70912 tatacatgaatgaaatcatggatgatggcattaacatgagcatcaacactgtggtgcctg 70971 Query: 651 acctccttgatga 663 || |||||||||| Sbjct: 70972 acatccttgatga 70984 Score = 111 bits (56), Expect = 8e-21 Identities = 134/160 (83%) Strand = Plus / Plus Query: 140 ggggaggggttcgaagagcgggtgaagcggctcttcgggtcgcatctcttcggcgacgtc 199 |||||||||||||| ||||||||||||||||| ||||||||| || |||| |||||| Sbjct: 69833 ggggaggggttcgaggagcgggtgaagcggctgttcgggtcgaggctgttcgacgacgtg 69892 Query: 200 ccgagctcctccttcccggcagcttcctggtccgtcgccgccggagatgttgagcgccag 259 ||| | || ||||||||||| || || ||||| || || ||||| || || ||||| | | Sbjct: 69893 ccggggtcgtccttcccggcggcgtcgtggtcggtggcggccggggacgtggagcggcgg 69952 Query: 260 cgctgggcgcgtccgtcggaggcccgcgacgaggaggagg 299 || |||||| |||||||||||||||||||||||||||| Sbjct: 69953 cggtgggcgaagccgtcggaggcccgcgacgaggaggagg 69992 Score = 60.0 bits (30), Expect = 3e-05 Identities = 139/173 (80%), Gaps = 3/173 (1%) Strand = Plus / Plus Query: 1180 tgagattcctagttcagtcacattcatccctaggaagaagtcagttgatgccatggtggt 1239 |||||| |||| |||||| || |||||||| |||||||| || | ||||| ||| || Sbjct: 71492 tgagatacctacttcagttacgttcatcccacggaagaagacaatcgatgcaatgacagt 71551 Query: 1240 ggatgagggccccaaatttagtgacgcaaacccatctctcattagtgcagcagcagcagt 1299 |||||||| ||||||| | ||| |||||| ||||||||||| || || |||| || Sbjct: 71552 agatgagggtcccaaatccaatgatgcaaactcatctctcattggtctggcggcag--gt 71609 Query: 1300 agcctctgacggaactgaccaatgtgagatggatgaagatgaccctaaagcat 1352 |||||||| | |||||| ||||| || |||||||||||||| |||||||||| Sbjct: 71610 -gcctctgatgaaactgagcaatgcgaaatggatgaagatgatcctaaagcat 71661 Score = 58.0 bits (29), Expect = 1e-04 Identities = 35/37 (94%) Strand = Plus / Plus Query: 497 gtttcgatcggcctcgacccgactctggatcgggagg 533 ||||| |||||||||||||||||||||||||| |||| Sbjct: 70223 gtttccatcggcctcgacccgactctggatcgagagg 70259 Score = 44.1 bits (22), Expect = 1.6 Identities = 31/34 (91%) Strand = Plus / Plus Query: 338 tccgcgttttacgatgccaacgggtgcctccgcg 371 |||||||| ||||| | ||||||||||||||||| Sbjct: 70040 tccgcgttctacgacgacaacgggtgcctccgcg 70073
>gb|AY109153.1| Zea mays PCO142755 mRNA sequence Length = 723 Score = 119 bits (60), Expect = 3e-23 Identities = 174/212 (82%) Strand = Plus / Plus Query: 1034 gactatgttaggaacccttcaaagtacacatgttacactctagagacaccagagagtact 1093 |||||||| |||||||||||||||||||| ||||||| || || ||||||| || | Sbjct: 293 gactatgtaaggaacccttcaaagtacacccgttacaccctggatgtaccagagtctaat 352 Query: 1094 gatgaatctaataggagagctcttgcagacttgcacaatctgttaggcagatcagatccc 1153 ||||| || || |||| |||||||| ||| |||| |||||||||| |||||||| | Sbjct: 353 gatgactcgaacaggacggctcttgctgacctgcatgatctgttagggagatcagaccaa 412 Query: 1154 aacaagatgcagcctgagacacctgctgagattcctagttcagtcacattcatccctagg 1213 |||| ||| || ||||||| ||| |||||||||||| |||||||||||||||||| | Sbjct: 413 aacaggatacattctgagactgctgttgagattcctagctcagtcacattcatccctcgc 472 Query: 1214 aagaagtcagttgatgccatggtggtggatga 1245 || |||||||| |||||||||| |||||||| Sbjct: 473 aaaaagtcagtggatgccatggcagtggatga 504 Score = 89.7 bits (45), Expect = 3e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 839 aaacctatactgaagaggaaggaggagcaagccgattcaaaaccaaggaagcgtgtgagg 898 |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| || Sbjct: 98 aaacctatactgaagaggaaggaggagcaagcggatttgaaaccaaggaaacgtgtccgg 157 Query: 899 tttaatgctgatgttaa 915 ||| ||||| ||||||| Sbjct: 158 tttgatgctaatgttaa 174 Score = 73.8 bits (37), Expect = 2e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 936 ttgaacgtgatgaagattctcccatggttcctcagtccatggatgtggtcaca 988 |||||||||||||||||||||| ||||||||||| |||||||| || |||||| Sbjct: 195 ttgaacgtgatgaagattctccaatggttcctcaatccatggaagtagtcaca 247 Score = 44.1 bits (22), Expect = 1.6 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1301 gcctctgacggaactgaccaatgtgagatggatgaagatgac 1342 |||||||| | | |||| ||||| |||||||||||||||||| Sbjct: 557 gcctctgatgaacctgatcaatgcgagatggatgaagatgac 598
>gb|AY107661.1| Zea mays PCO103158 mRNA sequence Length = 474 Score = 101 bits (51), Expect = 8e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 1167 ctgagacacctgctgagattcctagttcagtcacattcatccctaggaagaagtcagttg 1226 ||||||| |||| |||||||||||| |||||||||||||||||| | ||||||||||| | Sbjct: 68 ctgagacgcctgttgagattcctagctcagtcacattcatccctcgcaagaagtcagtgg 127 Query: 1227 atgccatggtggtggatgagggcccca 1253 || |||||| |||||||||||||||| Sbjct: 128 ataccatggcagtggatgagggcccca 154 Score = 50.1 bits (25), Expect = 0.026 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1314 ctgaccaatgtgagatggatgaagatgac 1342 |||| |||||||||||||||||||||||| Sbjct: 212 ctgatcaatgtgagatggatgaagatgac 240
>ref|NM_001059201.1| Oryza sativa (japonica cultivar-group) Os04g0397400 (Os04g0397400) mRNA, partial cds Length = 352 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1312 aactgaccaatgtgagatggatgaagatgaccctaaagcat 1352 |||||| ||||| || |||||||||||||| |||||||||| Sbjct: 2 aactgagcaatgcgaaatggatgaagatgatcctaaagcat 42
>dbj|AK059476.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E10, full insert sequence Length = 367 Score = 50.1 bits (25), Expect = 0.026 Identities = 37/41 (90%) Strand = Plus / Plus Query: 1312 aactgaccaatgtgagatggatgaagatgaccctaaagcat 1352 |||||| ||||| || |||||||||||||| |||||||||| Sbjct: 17 aactgagcaatgcgaaatggatgaagatgatcctaaagcat 57
>emb|AL954363.27| Zebrafish DNA sequence from clone CH211-175L6 in linkage group 3, complete sequence Length = 160599 Score = 48.1 bits (24), Expect = 0.10 Identities = 33/36 (91%) Strand = Plus / Minus Query: 276 cggaggcccgcgacgaggaggaggagctcgccgcgg 311 ||||||||| ||||||||||||||||| ||||||| Sbjct: 95563 cggaggccccggacgaggaggaggagctggccgcgg 95528
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 46.1 bits (23), Expect = 0.40 Identities = 29/31 (93%) Strand = Plus / Plus Query: 293 gaggaggagctcgccgcggccgagcgcgccg 323 ||||| ||||||||||||| ||||||||||| Sbjct: 3312553 gaggacgagctcgccgcggtcgagcgcgccg 3312583
>emb|CR727069.2|CNS0GNYB Tetraodon nigroviridis full-length cDNA Length = 1661 Score = 46.1 bits (23), Expect = 0.40 Identities = 23/23 (100%) Strand = Plus / Plus Query: 521 ctggatcgggaggaagaggagga 543 ||||||||||||||||||||||| Sbjct: 891 ctggatcgggaggaagaggagga 913
>emb|CR726519.2|CNS0GNJ1 Tetraodon nigroviridis full-length cDNA Length = 1502 Score = 46.1 bits (23), Expect = 0.40 Identities = 23/23 (100%) Strand = Plus / Plus Query: 521 ctggatcgggaggaagaggagga 543 ||||||||||||||||||||||| Sbjct: 865 ctggatcgggaggaagaggagga 887
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.40 Identities = 23/23 (100%) Strand = Plus / Plus Query: 301 gctcgccgcggccgagcgcgccg 323 ||||||||||||||||||||||| Sbjct: 3598893 gctcgccgcggccgagcgcgccg 3598915 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 cgccgcggccgagcgcgccga 324 ||||||||||||||||||||| Sbjct: 1554737 cgccgcggccgagcgcgccga 1554757
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 44.1 bits (22), Expect = 1.6 Identities = 28/30 (93%) Strand = Plus / Plus Query: 278 gaggcccgcgacgaggaggaggagctcgcc 307 |||||||||||||||| |||||||||||| Sbjct: 791493 gaggcccgcgacgaggtcgaggagctcgcc 791522 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 agctcgccgcggccgagcgcg 320 ||||||||||||||||||||| Sbjct: 858572 agctcgccgcggccgagcgcg 858592
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 161 gtgaagcggctcttcgggtcgc 182 |||||||||||||||||||||| Sbjct: 1229370 gtgaagcggctcttcgggtcgc 1229391
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 161 gtgaagcggctcttcgggtcgc 182 |||||||||||||||||||||| Sbjct: 2276019 gtgaagcggctcttcgggtcgc 2275998
>gb|AY211520.1| Xenopus laevis negatively regulating zinc finger protein (NZFP) mRNA, complete cds Length = 2197 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 223 catccctaggaagaagtcagatgatg 248
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 Length = 2356219 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1093 tgatgaatctaataggagagctcttg 1118 |||||||||||||||||||| ||||| Sbjct: 1974210 tgatgaatctaataggagagttcttg 1974235
>gb|BC099055.1| Xenopus laevis hypothetical protein MGC115682, mRNA (cDNA clone MGC:115682 IMAGE:6325209), complete cds Length = 2913 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 240 catccctaggaagaagtcagatgatg 265
>gb|S57883.1| finger associated box-zinc finger {FAX elements A, C, and D, clone XFG 48-2} [Xenopus laevis, Genomic, 537 nt] Length = 537 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 202 catccctaggaagaagtcagatgatg 227
>gb|S57882.1| finger associated box-zinc finger {FAX elements A to F, clone XFG 66-1} [Xenopus laevis, Genomic, 587 nt] Length = 587 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 253 catccctaggaagaagtcagatgatg 278
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 161 gtgaagcggctcttcgggtcgc 182 |||||||||||||||||||||| Sbjct: 2098688 gtgaagcggctcttcgggtcgc 2098709
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 294 aggaggagctcgccgcggccgagcgc 319 ||||| |||||||||||||||||||| Sbjct: 1184163 aggagaagctcgccgcggccgagcgc 1184138
>gb|M25873.1|XELZNF8 Xenopus laevis zinc finger protein mRNA, clone XLcGF66.1 Length = 917 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 182 catccctaggaagaagtcagatgatg 207
>gb|M25872.1|XELZNF7 Xenopus laevis zinc finger protein mRNA, clone XLcGF53.1 Length = 1061 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 212 catccctaggaagaagtcagatgatg 237
>gb|M25871.1|XELZNF6 Xenopus laevis zinc finger protein mRNA, clone XLcGF48.2 Length = 1030 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 112 catccctaggaagaagtcagatgatg 137
>gb|M25868.1|XELZNF3 Xenopus laevis zinc finger protein mRNA, clone XLcOF8.4 Length = 816 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 57 catccctaggaagaagtcagatgatg 82
>gb|M25866.1|XELZNF1 Xenopus laevis zinc finger protein mRNA, clone XLcOF7.1 Length = 1076 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1204 catccctaggaagaagtcagttgatg 1229 |||||||||||||||||||| ||||| Sbjct: 287 catccctaggaagaagtcagatgatg 312
>gb|AC153157.3| Ornithorhynchus anatinus BAC clone OABb-358D20 from chromosome unknown, complete sequence Length = 140241 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 tccttcccggcagcttcctgg 229 ||||||||||||||||||||| Sbjct: 85755 tccttcccggcagcttcctgg 85775
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 990 caaagggcaactcctccacgcgatc 1014 ||||||||||||||| ||||||||| Sbjct: 6901847 caaagggcaactcctgcacgcgatc 6901823
>gb|EF015632.1| Schizochytrium sp. ATCC 20888 type I fatty acid synthase gene, complete cds Length = 12411 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 gaggaggagctcgccgcggcc 313 ||||||||||||||||||||| Sbjct: 6187 gaggaggagctcgccgcggcc 6207
>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence Length = 3556545 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 tcgccgcggccgagcgcgccg 323 ||||||||||||||||||||| Sbjct: 1378152 tcgccgcggccgagcgcgccg 1378132
>emb|CR938721.5| Platypus DNA sequence from clone CLM1-231M12, complete sequence Length = 171880 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 tccttcccggcagcttcctgg 229 ||||||||||||||||||||| Sbjct: 85851 tccttcccggcagcttcctgg 85871
>gb|AC187574.2| Rhesus macaque BAC clone CH250-33H12 from chromosome unknown, complete sequence Length = 209629 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 655 ccttgatgacaccattgatga 675 ||||||||||||||||||||| Sbjct: 195353 ccttgatgacaccattgatga 195333
>ref|XM_001085608.1| PREDICTED: Macaca mulatta similar to poly(A) binding protein, cytoplasmic 4 (inducible form) (LOC695433), mRNA Length = 4706 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 655 ccttgatgacaccattgatga 675 ||||||||||||||||||||| Sbjct: 924 ccttgatgacaccattgatga 944
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 tcgccgcggccgagcgcgccg 323 ||||||||||||||||||||| Sbjct: 5517899 tcgccgcggccgagcgcgccg 5517919
>gb|AC158767.3| Mus musculus chromosome 1, clone RP24-128E5, complete sequence Length = 188758 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 944 gatgaagattctcccatggttcctcagtc 972 ||||| |||||||||| |||||||||||| Sbjct: 44438 gatgaggattctcccagggttcctcagtc 44410
>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11, complete sequence Length = 146677 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 gcccgcgacgaggaggaggagctcgccgc 309 |||| ||||||||||||||||| |||||| Sbjct: 101713 gcccacgacgaggaggaggagcccgccgc 101685
>gb|AC102545.9| Mus musculus chromosome 9, clone RP23-118J13, complete sequence Length = 241789 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1282 tagtgcagcagcagcagtagc 1302 ||||||||||||||||||||| Sbjct: 84064 tagtgcagcagcagcagtagc 84044
>gb|AC093673.4| Homo sapiens BAC clone RP11-563K23 from 7, complete sequence Length = 33449 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 aacccccatctcaaacccaca 26 ||||||||||||||||||||| Sbjct: 2060 aacccccatctcaaacccaca 2040
>gb|AC135806.4| Mus musculus BAC clone RP24-289M10 from chromosome 18, complete sequence Length = 179327 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1072 tctagagacaccagagagtac 1092 ||||||||||||||||||||| Sbjct: 134545 tctagagacaccagagagtac 134525
>gb|AC131111.4| Mus musculus BAC clone RP23-449N4 from chromosome 7, complete sequence Length = 179068 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1154 aacaagatgcagcctgagaca 1174 ||||||||||||||||||||| Sbjct: 160440 aacaagatgcagcctgagaca 160420
>gb|AC124548.5| Mus musculus BAC clone RP23-276P11 from 18, complete sequence Length = 173805 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1072 tctagagacaccagagagtac 1092 ||||||||||||||||||||| Sbjct: 63390 tctagagacaccagagagtac 63370
>gb|AC145982.2| Pan troglodytes BAC clone RP43-13J3 from 7, complete sequence Length = 141213 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 aacccccatctcaaacccaca 26 ||||||||||||||||||||| Sbjct: 111825 aacccccatctcaaacccaca 111805
>gb|BC078728.1| Rattus norvegicus spermatogenesis associated 7, mRNA (cDNA clone MGC:93176 IMAGE:7114267), complete cds Length = 1615 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1378 gatgcagaccaactctaagatgaactcca 1406 |||||||||||| ||||||||||| |||| Sbjct: 392 gatgcagaccaattctaagatgaattcca 420
>emb|BX284640.7| Zebrafish DNA sequence from clone CH211-286B5 in linkage group 2, complete sequence Length = 158537 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1162 gcagcctgagacacctgctgagatt 1186 |||||||||||||||||| |||||| Sbjct: 127361 gcagcctgagacacctgcagagatt 127337
>gb|AY965681.1| Eptatretus stoutii nonfunctional variable lymphocyte receptor B (VLRB) gene, complete sequence Length = 76730 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 530 gaggaagaggaggacaaatat 550 ||||||||||||||||||||| Sbjct: 42154 gaggaagaggaggacaaatat 42174
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 gaggaggaggagctcgccgcg 310 ||||||||||||||||||||| Sbjct: 9863881 gaggaggaggagctcgccgcg 9863861
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 gcccgcgacgaggaggaggagctcgccgc 309 |||| ||||||||||||||||| |||||| Sbjct: 9329768 gcccacgacgaggaggaggagcccgccgc 9329740
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 823 tcaggatatcggtgtgaaacc 843 ||||||||||||||||||||| Sbjct: 21563832 tcaggatatcggtgtgaaacc 21563852 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 gcccgcgacgaggaggaggagctcgccgc 309 |||| ||||||||||||||||| |||||| Sbjct: 31982130 gcccacgacgaggaggaggagcccgccgc 31982102
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 gcccgcgacgaggaggaggagctcgccgc 309 |||| ||||||||||||||||| |||||| Sbjct: 40598807 gcccacgacgaggaggaggagcccgccgc 40598779
>emb|AL035689.26|HS187J11 Human DNA sequence from clone RP1-187J11 on chromosome 6q11.1-22.33 Contains the 3' part of the gene for endoplasmic reticulum associated protein 140 kDa (ERAP140) (similar to nucleolar protein C7B), the gene for a novel protein similar to protein kinase C inhibitors, the gene for MDS024 protein and two putative CpG islands, complete sequence Length = 144364 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1472 tttaagaaactttacaagttt 1492 ||||||||||||||||||||| Sbjct: 68159 tttaagaaactttacaagttt 68179
>emb|AL035670.29|HS347E1 Human DNA sequence from clone RP3-347E1 on chromosome 6p11.2-21.1 Contains the 3' end of the CYP39A1 gene for cytochrome P450 subfamily XXXIX (oxysterol 7 alpha-hydroxylase) polypeptide 1 and a novel gene, complete sequence Length = 96618 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1472 tttaagaaactttacaagttt 1492 ||||||||||||||||||||| Sbjct: 60324 tttaagaaactttacaagttt 60344
>gb|AY054120.1|AY054120 Mycobacterium smegmatis cosmid cTra12, partial sequence Length = 30277 Score = 42.1 bits (21), Expect = 6.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 990 caaagggcaactcctccacgcgatc 1014 ||||||||||||||| ||||||||| Sbjct: 16820 caaagggcaactcctgcacgcgatc 16844
>gb|AY129333.1| Mycobacterium phage Che9c, complete sequence Length = 57050 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1236 tggtggatgagggccccaaat 1256 ||||||||||||||||||||| Sbjct: 27393 tggtggatgagggccccaaat 27413
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 gcccgcgacgaggaggaggagctcgccgc 309 |||| ||||||||||||||||| |||||| Sbjct: 40785 gcccacgacgaggaggaggagcccgccgc 40757
>emb|BX569792.15| Zebrafish DNA sequence from clone CH211-197I17 in linkage group 16, complete sequence Length = 234579 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1280 attagtgcagcagcagcagta 1300 ||||||||||||||||||||| Sbjct: 137495 attagtgcagcagcagcagta 137475
>emb|BX537249.8| Zebrafish DNA sequence from clone DKEY-77B17 in linkage group 20, complete sequence Length = 92426 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1068 acactctagagacaccagaga 1088 ||||||||||||||||||||| Sbjct: 33919 acactctagagacaccagaga 33899
>emb|BX323887.10| Zebrafish DNA sequence from clone CH211-274C22 in linkage group 13, complete sequence Length = 134841 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1068 acactctagagacaccagaga 1088 ||||||||||||||||||||| Sbjct: 127795 acactctagagacaccagaga 127775
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 823 tcaggatatcggtgtgaaacc 843 ||||||||||||||||||||| Sbjct: 52782 tcaggatatcggtgtgaaacc 52802
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 823 tcaggatatcggtgtgaaacc 843 ||||||||||||||||||||| Sbjct: 158759 tcaggatatcggtgtgaaacc 158779
>emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 in linkage group 22, complete sequence Length = 195552 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1068 acactctagagacaccagaga 1088 ||||||||||||||||||||| Sbjct: 17219 acactctagagacaccagaga 17199
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 gcccgcgacgaggaggaggagctcgccgc 309 |||| ||||||||||||||||| |||||| Sbjct: 143131 gcccacgacgaggaggaggagcccgccgc 143103
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 gcccgcgacgaggaggaggagctcgccgc 309 |||| ||||||||||||||||| |||||| Sbjct: 2505 gcccacgacgaggaggaggagcccgccgc 2477
>gb|AC087557.20| Mus musculus strain C57BL/6J chromosome 9 clone rp23-184f1, complete sequence Length = 186745 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1282 tagtgcagcagcagcagtagc 1302 ||||||||||||||||||||| Sbjct: 171224 tagtgcagcagcagcagtagc 171204
>gb|AC010287.9| Homo sapiens chromosome 16 clone CTA-331F8, complete sequence Length = 198949 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 ctccttcccggcagcttcctg 228 ||||||||||||||||||||| Sbjct: 172083 ctccttcccggcagcttcctg 172063
>emb|CR522984.1| Gallus gallus finished cDNA, clone ChEST525o7 Length = 850 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 gcgacgaggaggaggagctcg 305 ||||||||||||||||||||| Sbjct: 564 gcgacgaggaggaggagctcg 584
>gb|AC012183.9| Homo sapiens chromosome 16 clone RP11-451N19, complete sequence Length = 220173 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 ctccttcccggcagcttcctg 228 ||||||||||||||||||||| Sbjct: 164698 ctccttcccggcagcttcctg 164718
>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5, complete sequence Length = 178961 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 663 acaccattgatgagatctgcg 683 ||||||||||||||||||||| Sbjct: 16951 acaccattgatgagatctgcg 16931
>ref|NM_138862.1| Rattus norvegicus spermatogenesis associated 7 (Spata7), mRNA gb|AF094609.1|AF094609 Rattus norvegicus fertility related protein WMP1 mRNA, complete cds Length = 2228 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1378 gatgcagaccaactctaagatgaactcca 1406 |||||||||||| ||||||||||| |||| Sbjct: 687 gatgcagaccaattctaagatgaattcca 715
>gb|AC117771.17| Mus musculus chromosome 1, clone RP24-512A5, complete sequence Length = 161292 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 944 gatgaagattctcccatggttcctcagtc 972 ||||| |||||||||| |||||||||||| Sbjct: 153409 gatgaggattctcccagggttcctcagtc 153437
>emb|AL953847.13| Zebrafish DNA sequence from clone CH211-255A4 in linkage group 3, complete sequence Length = 144933 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1068 acactctagagacaccagaga 1088 ||||||||||||||||||||| Sbjct: 59229 acactctagagacaccagaga 59249
>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140806 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 gaggaggaggagctcgccgcg 310 ||||||||||||||||||||| Sbjct: 68589 gaggaggaggagctcgccgcg 68609
>gb|AF021791.1|AF021791 Mus musculus repeat element upstream of the Rasgrf1/Cdc25Mm gene Length = 2017 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1282 tagtgcagcagcagcagtagc 1302 ||||||||||||||||||||| Sbjct: 147 tagtgcagcagcagcagtagc 127
>gb|AC147232.4| Mus musculus BAC clone RP23-311C15 from 7, complete sequence Length = 191521 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1154 aacaagatgcagcctgagaca 1174 ||||||||||||||||||||| Sbjct: 28467 aacaagatgcagcctgagaca 28447
>dbj|AB037674.1| Paralichthys olivaceus VDRa mRNA for vitamin D receptor a, complete cds Length = 2429 Score = 42.1 bits (21), Expect = 6.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 845 atactgaagaggaaggaggag 865 ||||||||||||||||||||| Sbjct: 587 atactgaagaggaaggaggag 607
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482D04 Length = 144583 Score = 42.1 bits (21), Expect = 6.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 gcccgcgacgaggaggaggagctcgccgc 309 |||| ||||||||||||||||| |||||| Sbjct: 78822 gcccacgacgaggaggaggagcccgccgc 78794 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 257,213,884 Number of extensions: 14849420 Number of successful extensions: 382014 Number of sequences better than 10.0: 75 Number of HSP's gapped: 382011 Number of HSP's successfully gapped: 94 Length of query: 1632 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1609 Effective length of database: 18,503,978,556 Effective search space: 29772901496604 Effective search space used: 29772901496604 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)