ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf67k17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9NZW0:GOG8A_HUMAN Golgin subfamily A member 8A/B - Homo sapiens... 35 1.6
2P27884:CAC1A_RABIT Voltage-dependent P/Q-type calcium channel su... 34 2.1
3Q5NDE7:AGO61_XENLA Uncharacterized glycosyltransferase AGO61 pre... 34 2.1
4Q5NDE6:AGO61_XENTR Uncharacterized glycosyltransferase AGO61 pre... 33 3.6
5P10569:MYSC_ACACA Myosin IC heavy chain - Acanthamoeba castellan... 33 6.2

>Q9NZW0:GOG8A_HUMAN Golgin subfamily A member 8A/B - Homo sapiens (Human)|
          Length = 460
 Score = 34.7 bits (78), Expect = 1.6
 Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
 Frame = +3

Query: 816  ARRGGGDREVGPVPGGRAAVHEEAPRAGGGVLR----GRVHGQLLPRQHGRADPAVPDGV 983
            A  GGG  + GP  GG     E A  AG GV         HG+ L      A    P   
Sbjct: 324  ASPGGGHHQAGPGQGGEEG--EAAGAAGDGVAACGSYNEGHGKFLAAAQNPAAEPSPGAP 381

Query: 984  APQGRGAAADH 1016
            APQ  GAA  H
Sbjct: 382  APQELGAADKH 392



to top

>P27884:CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A -|
            Oryctolagus cuniculus (Rabbit)
          Length = 2424

 Score = 34.3 bits (77), Expect = 2.1
 Identities = 23/67 (34%), Positives = 30/67 (44%)
 Frame = +3

Query: 798  QGRLPPARRGGGDREVGPVPGGRAAVHEEAPRAGGGVLRGRVHGQLLPRQHGRADPAVPD 977
            Q R P  RRGGG R +   PG R  + +++P  G  V   R      P+   R  P    
Sbjct: 2289 QRRRPRRRRGGGGRALRRAPGPREPLAQDSPGRGPSVCLARAARPAGPQ---RLLPGPRT 2345

Query: 978  GVAPQGR 998
            G AP+ R
Sbjct: 2346 GQAPRAR 2352



to top

>Q5NDE7:AGO61_XENLA Uncharacterized glycosyltransferase AGO61 precursor - Xenopus laevis|
            (African clawed frog)
          Length = 578

 Score = 34.3 bits (77), Expect = 2.1
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 1456 HGAGLTNQIFLPTQAVVLQIVPWG-NMDWMATNFYGQPAREMQLRYVEYYVDEEETSL 1626
            HGA L   +FLP  AVV+++ P+G N +             M+L+YV +   EEE ++
Sbjct: 343  HGAQLVTSLFLPKGAVVVELFPYGINPEHYTPYKTLSTLPGMELQYVAWQNTEEENTI 400



to top

>Q5NDE6:AGO61_XENTR Uncharacterized glycosyltransferase AGO61 precursor - Xenopus|
            tropicalis (Western clawed frog) (Silurana tropicalis)
          Length = 576

 Score = 33.5 bits (75), Expect = 3.6
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 1456 HGAGLTNQIFLPTQAVVLQIVPWG-NMDWMATNFYGQPAREMQLRYVEYYVDEEETSL 1626
            HGA L   +FLP  A+V+++ P+G N +             M+L+YV +   EEE ++
Sbjct: 343  HGAQLITSLFLPKGAIVVELFPYGVNPEHYTPYKTLSTLPGMELQYVAWQNTEEENTI 400



to top

>P10569:MYSC_ACACA Myosin IC heavy chain - Acanthamoeba castellanii (Amoeba)|
          Length = 1168

 Score = 32.7 bits (73), Expect = 6.2
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 798  QGRLPPARRG--GGDREVGPVPGGRAAVHEEAPRAGGGVLRGRVHGQLLPRQHGRADPAV 971
            +G  PP   G  GG R   P PGG        P   GG+ RG   G + PR  GRA P  
Sbjct: 1111 RGAPPPGAGGPPGGGRGGAPPPGGMRGRGGPGPAPPGGMARG---GMMPPR--GRAGPPP 1165

Query: 972  P 974
            P
Sbjct: 1166 P 1166



 Score = 32.3 bits (72), Expect = 8.0
 Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
 Frame = +3

Query: 813  PARRGGGDREVGPVPGGRAAVHEEAPRAGGGVLRGRV--------HGQLLPRQHGRADPA 968
            PA    G     P PGG++     AP  G G +RGR          G   P   GRA P 
Sbjct: 1039 PAPGPSGGPRPAP-PGGKSG--RAAPMGGPGPMRGRGGPAPGGPGRGGAPPPGAGRAGPP 1095

Query: 969  ------VPDGVAPQGRGA 1004
                   P G AP+GRGA
Sbjct: 1096 GGRGMPAPGGAAPRGRGA 1113


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 224,660,098
Number of extensions: 4142226
Number of successful extensions: 14733
Number of sequences better than 10.0: 5
Number of HSP's gapped: 14671
Number of HSP's successfully gapped: 6
Length of query: 702
Length of database: 100,686,439
Length adjustment: 120
Effective length of query: 582
Effective length of database: 67,771,039
Effective search space: 39442744698
Effective search space used: 39442744698
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top