ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf64l19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001048691.1| Oryza sativa (japonica cultivar-group) Os01g0173000 (Os01g0173000) mRNA, complete cds Length = 585 Score = 280 bits (141), Expect = 7e-72 Identities = 303/357 (84%) Strand = Plus / Plus Query: 211 acgccgagttcttccagccctccgacaccaggcccatcatgctcttcgacggcgtatgca 270 ||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |||| Sbjct: 185 acgccgagttcttccagacctccgacacaaggcccatcatgctcttcgacggtgtgtgca 244 Query: 271 acctctgcaacggcggcgtccggttcgtgcgggagcacgaccccggcaggagcatcaggt 330 |||||||||||||||||||||||||||| | |||||| |||||| ||| |||||||||| Sbjct: 245 acctctgcaacggcggcgtccggttcgtccaggagcatgaccccaacagaagcatcaggt 304 Query: 331 acatccccctccagagcgactccgggaggaagctcctgcgccggtccggcagaagccccg 390 | ||||| | |||||||| ||||||||||||||||| | |||| || ||| ||| | Sbjct: 305 atatcccgttgcagagcgaatccgggaggaagctccttcagaggtcagggagagcccctg 364 Query: 391 acgacatctccagcgttgtcctcgtcgagaaagacaggtcatacatcaagtctgatgccg 450 | |||||||| || || || || |||||||| |||||||| |||||||||||||| || | Sbjct: 365 atgacatctcgagtgtggttcttgtcgagaaggacaggtcctacatcaagtctgaagcag 424 Query: 451 tgctgaggataatggagtacctcaacctgccgttcccgcagctcgccgcgctcctcaaaa 510 ||||||||||||||| ||| ||||||||||| || || ||||| ||| | ||||||| Sbjct: 425 tgctgaggataatggggtatctcaacctgccttttcctcagctagccaccttcctcaact 484 Query: 511 tcgcccccctgtttgtgagggacttcgcctacgacaacgtcgcggacaaccggtacg 567 | | ||| ||||| ||||||||||||| |||||||| || || ||||||||||||| Sbjct: 485 ttgtccctctgttcctgagggacttcgcgtacgacaatgttgcagacaaccggtacg 541
>gb|AY107248.1| Zea mays PCO140096 mRNA sequence Length = 859 Score = 236 bits (119), Expect = 9e-59 Identities = 218/251 (86%) Strand = Plus / Plus Query: 317 caggagcatcaggtacatccccctccagagcgactccgggaggaagctcctgcgccggtc 376 |||||||||||||||| | || || |||||||| ||||||||||||||||||| |||| Sbjct: 412 caggagcatcaggtacgtgccgctgcagagcgagtccgggaggaagctcctgcagaggtc 471 Query: 377 cggcagaagccccgacgacatctccagcgttgtcctcgtcgagaaagacaggtcatacat 436 || || ||| |||||||||||||||||||| |||||||||||||||||||| | ||| Sbjct: 472 agggaggtcccctgacgacatctccagcgttgttctcgtcgagaaagacaggtctttcat 531 Query: 437 caagtctgatgccgtgctgaggataatggagtacctcaacctgccgttcccgcagctcgc 496 ||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 532 caagtctgaagcggtgctgaggataatggagtacctcaacctgcccttcccgcagctcgc 591 Query: 497 cgcgctcctcaaaatcgcccccctgtttgtgagggacttcgcctacgacaacgtcgcgga 556 || ||||||| ||| ||| ||||| ||||||||||||| ||||||||||| ||| | Sbjct: 592 cgtcttcctcaagttcgtccctctgttcctgagggacttcgcgtacgacaacgttgcgaa 651 Query: 557 caaccggtacg 567 |||| |||||| Sbjct: 652 caacaggtacg 662 Score = 174 bits (88), Expect = 3e-40 Identities = 100/104 (96%) Strand = Plus / Plus Query: 211 acgccgagttcttccagccctccgacaccaggcccatcatgctcttcgacggcgtatgca 270 ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct: 276 acgccgagttcttccagccttccgacaccaggccaatcatgctcttcgacggcgtctgca 335 Query: 271 acctctgcaacggcggcgtccggttcgtgcgggagcacgacccc 314 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 336 acctctgcaacggcggcgtccgcttcgtgcgggagcacgacccc 379
>dbj|AB108227.1| Phleum pratense DNA, SSR, microsatellite A11-C07 Length = 387 Score = 105 bits (53), Expect = 2e-19 Identities = 68/73 (93%) Strand = Plus / Plus Query: 425 caggtcatacatcaagtctgatgccgtgctgaggataatggagtacctcaacctgccgtt 484 |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct: 32 caggtcctacatcaagtctgaagccgtgctgaggatcatggagtacctcaacctgccctt 91 Query: 485 cccgcagctcgcc 497 ||| ||||||||| Sbjct: 92 cccccagctcgcc 104 Score = 81.8 bits (41), Expect = 3e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 521 gtttgtgagggacttcgcctacgacaacgtcgcggacaaccggtacgtggttttcggccg 580 |||||||||||||||||| ||||||||||| || ||||||||||| |||| ||||| || Sbjct: 289 gtttgtgagggacttcgcgtacgacaacgttgcaaacaaccggtacctggtgttcggacg 348 Query: 581 gtcagagacagaatcgtgcgagatactctgaat 613 |||||| | ||| | || |||||||||||||| Sbjct: 349 ctcagagtcggaagcatgtgagatactctgaat 381
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 87.7 bits (44), Expect = 5e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 211 acgccgagttcttccagccctccgacaccaggcccatcatgctcttcgacgg 262 ||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 3740828 acgccgagttcttccagacctccgacacaaggcccatcatgctcttcgacgg 3740777 Score = 73.8 bits (37), Expect = 8e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 425 caggtcatacatcaagtctgatgccgtgctgaggataatggagtacctcaacctgcc 481 |||||| |||||||||||||| || |||||||||||||||| ||| ||||||||||| Sbjct: 3740215 caggtcctacatcaagtctgaagcagtgctgaggataatggggtatctcaacctgcc 3740159 Score = 71.9 bits (36), Expect = 3e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 267 tgcaacctctgcaacggcggcgtccggttcgtgcgggagcacgacccc 314 |||||||||||||||||||||||||||||||| | |||||| |||||| Sbjct: 3740611 tgcaacctctgcaacggcggcgtccggttcgtccaggagcatgacccc 3740564 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 321 agcatcaggtacatccccctccagagcgactccgggaggaagctcct 367 ||||||||||| ||||| | |||||||| ||||||||||||||||| Sbjct: 3740452 agcatcaggtatatcccgttgcagagcgaatccgggaggaagctcct 3740406 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 tgagggacttcgcctacgacaacgtcgcggacaaccggtacg 567 ||||||||||||| |||||||| || || ||||||||||||| Sbjct: 3739928 tgagggacttcgcgtacgacaatgttgcagacaaccggtacg 3739887
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 87.7 bits (44), Expect = 5e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 211 acgccgagttcttccagccctccgacaccaggcccatcatgctcttcgacgg 262 ||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 14370 acgccgagttcttccagacctccgacacaaggcccatcatgctcttcgacgg 14319 Score = 73.8 bits (37), Expect = 8e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 425 caggtcatacatcaagtctgatgccgtgctgaggataatggagtacctcaacctgcc 481 |||||| |||||||||||||| || |||||||||||||||| ||| ||||||||||| Sbjct: 13757 caggtcctacatcaagtctgaagcagtgctgaggataatggggtatctcaacctgcc 13701 Score = 71.9 bits (36), Expect = 3e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 267 tgcaacctctgcaacggcggcgtccggttcgtgcgggagcacgacccc 314 |||||||||||||||||||||||||||||||| | |||||| |||||| Sbjct: 14153 tgcaacctctgcaacggcggcgtccggttcgtccaggagcatgacccc 14106 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 321 agcatcaggtacatccccctccagagcgactccgggaggaagctcct 367 ||||||||||| ||||| | |||||||| ||||||||||||||||| Sbjct: 13994 agcatcaggtatatcccgttgcagagcgaatccgggaggaagctcct 13948 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 526 tgagggacttcgcctacgacaacgtcgcggacaaccggtacg 567 ||||||||||||| |||||||| || || ||||||||||||| Sbjct: 13470 tgagggacttcgcgtacgacaatgttgcagacaaccggtacg 13429
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 50.1 bits (25), Expect = 0.012 Identities = 31/33 (93%) Strand = Plus / Plus Query: 252 ctcttcgacggcgtatgcaacctctgcaacggc 284 |||||||||||||| |||||||| ||||||||| Sbjct: 6247987 ctcttcgacggcgtgtgcaacctgtgcaacggc 6248019
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Plus Query: 479 gccgttcccgcagctcgccgcg 500 |||||||||||||||||||||| Sbjct: 1891779 gccgttcccgcagctcgccgcg 1891800
>gb|CP000449.1| Maricaulis maris MCS10, complete genome Length = 3368780 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 cgttcccgcagctcgccgcgc 501 ||||||||||||||||||||| Sbjct: 1062085 cgttcccgcagctcgccgcgc 1062105 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 88,904,064 Number of extensions: 4483351 Number of successful extensions: 76912 Number of sequences better than 10.0: 8 Number of HSP's gapped: 76910 Number of HSP's successfully gapped: 19 Length of query: 766 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 744 Effective length of database: 18,508,616,841 Effective search space: 13770410929704 Effective search space used: 13770410929704 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
