| Clone Name | FLbaf52k15 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT831834.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN059I20, full insert sequence Length = 721 Score = 365 bits (184), Expect = 2e-97 Identities = 315/359 (87%), Gaps = 6/359 (1%) Strand = Plus / Plus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 160 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 219 Query: 237 tccgacgacacgtc------ggcgagcggcgatgagatcatcgaggacctcaaggggaag 290 ||||||||||| || ||| |||||||| ||| || ||| |||||||||| ||| Sbjct: 220 tccgacgacacctccacctcggccagcggcgacgagctcgtcgccgacctcaaggcaaag 279 Query: 291 tgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcgcg 350 ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 280 tgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcgcc 339 Query: 351 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtcccgttgctccccaagctc 410 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || Sbjct: 340 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtgccgctgctccccaagatc 399 Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| || || ||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 400 ctggagctcgtcggcctcggctacaccggctggttcgtctaccgctacctcctcttcaag 459 Query: 471 gaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaac 529 || ||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| Sbjct: 460 gagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaac 518 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 64 gccacggcgtacaccgtggcgctcctcggcg 94
>emb|CT831614.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN007B07, full insert sequence Length = 766 Score = 365 bits (184), Expect = 2e-97 Identities = 315/359 (87%), Gaps = 6/359 (1%) Strand = Plus / Plus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 205 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 264 Query: 237 tccgacgacacgtc------ggcgagcggcgatgagatcatcgaggacctcaaggggaag 290 ||||||||||| || ||| |||||||| ||| || ||| |||||||||| ||| Sbjct: 265 tccgacgacacctccacctcggccagcggcgacgagctcgtcgccgacctcaaggcaaag 324 Query: 291 tgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcgcg 350 ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 325 tgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcgcc 384 Query: 351 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtcccgttgctccccaagctc 410 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || Sbjct: 385 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtgccgctgctccccaagatc 444 Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| || || ||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 445 ctggagctcgtcggcctcggctacaccggctggttcgtctaccgctacctcctcttcaag 504 Query: 471 gaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaac 529 || ||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| Sbjct: 505 gagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaac 563 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 109 gccacggcgtacaccgtggcgctcctcggcg 139
>ref|NM_001063873.1| Oryza sativa (japonica cultivar-group) Os06g0264800 (Os06g0264800) mRNA, complete cds Length = 908 Score = 365 bits (184), Expect = 2e-97 Identities = 315/359 (87%), Gaps = 6/359 (1%) Strand = Plus / Plus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 208 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 267 Query: 237 tccgacgacacgtc------ggcgagcggcgatgagatcatcgaggacctcaaggggaag 290 ||||||||||| || ||| |||||||| ||| || ||| |||||||||| ||| Sbjct: 268 tccgacgacacctccacctcggccagcggcgacgagctcgtcgccgacctcaaggcaaag 327 Query: 291 tgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcgcg 350 ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 328 tgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcgcc 387 Query: 351 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtcccgttgctccccaagctc 410 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || Sbjct: 388 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtgccgctgctccccaagatc 447 Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| || || ||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 448 ctggagctcgtcggcctcggctacaccggctggttcgtctaccgctacctcctcttcaag 507 Query: 471 gaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaac 529 || ||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| Sbjct: 508 gagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaac 566 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 112 gccacggcgtacaccgtggcgctcctcggcg 142
>dbj|AK105959.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D11, full insert sequence Length = 908 Score = 365 bits (184), Expect = 2e-97 Identities = 315/359 (87%), Gaps = 6/359 (1%) Strand = Plus / Plus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 208 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 267 Query: 237 tccgacgacacgtc------ggcgagcggcgatgagatcatcgaggacctcaaggggaag 290 ||||||||||| || ||| |||||||| ||| || ||| |||||||||| ||| Sbjct: 268 tccgacgacacctccacctcggccagcggcgacgagctcgtcgccgacctcaaggcaaag 327 Query: 291 tgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcgcg 350 ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 328 tgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcgcc 387 Query: 351 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtcccgttgctccccaagctc 410 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || Sbjct: 388 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtgccgctgctccccaagatc 447 Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| || || ||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 448 ctggagctcgtcggcctcggctacaccggctggttcgtctaccgctacctcctcttcaag 507 Query: 471 gaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaac 529 || ||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| Sbjct: 508 gagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaac 566 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 112 gccacggcgtacaccgtggcgctcctcggcg 142
>dbj|AK099532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031L04, full insert sequence Length = 854 Score = 365 bits (184), Expect = 2e-97 Identities = 315/359 (87%), Gaps = 6/359 (1%) Strand = Plus / Plus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 213 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 272 Query: 237 tccgacgacacgtc------ggcgagcggcgatgagatcatcgaggacctcaaggggaag 290 ||||||||||| || ||| |||||||| ||| || ||| |||||||||| ||| Sbjct: 273 tccgacgacacctccacctcggccagcggcgacgagctcgtcgccgacctcaaggcaaag 332 Query: 291 tgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcgcg 350 ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 333 tgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcgcc 392 Query: 351 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtcccgttgctccccaagctc 410 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || Sbjct: 393 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtgccgctgctccccaagatc 452 Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| || || ||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 453 ctggagctcgtcggcctcggctacaccggctggttcgtctaccgctacctcctcttcaag 512 Query: 471 gaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaac 529 || ||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| Sbjct: 513 gagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaac 571 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 117 gccacggcgtacaccgtggcgctcctcggcg 147
>dbj|AK066637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I08, full insert sequence Length = 767 Score = 365 bits (184), Expect = 2e-97 Identities = 315/359 (87%), Gaps = 6/359 (1%) Strand = Plus / Plus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 209 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 268 Query: 237 tccgacgacacgtc------ggcgagcggcgatgagatcatcgaggacctcaaggggaag 290 ||||||||||| || ||| |||||||| ||| || ||| |||||||||| ||| Sbjct: 269 tccgacgacacctccacctcggccagcggcgacgagctcgtcgccgacctcaaggcaaag 328 Query: 291 tgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcgcg 350 ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 329 tgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcgcc 388 Query: 351 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtcccgttgctccccaagctc 410 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || Sbjct: 389 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtgccgctgctccccaagatc 448 Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| || || ||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 449 ctggagctcgtcggcctcggctacaccggctggttcgtctaccgctacctcctcttcaag 508 Query: 471 gaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaac 529 || ||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| Sbjct: 509 gagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaac 567 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 113 gccacggcgtacaccgtggcgctcctcggcg 143
>dbj|AK060455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-A05, full insert sequence Length = 901 Score = 365 bits (184), Expect = 2e-97 Identities = 315/359 (87%), Gaps = 6/359 (1%) Strand = Plus / Plus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 215 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 274 Query: 237 tccgacgacacgtc------ggcgagcggcgatgagatcatcgaggacctcaaggggaag 290 ||||||||||| || ||| |||||||| ||| || ||| |||||||||| ||| Sbjct: 275 tccgacgacacctccacctcggccagcggcgacgagctcgtcgccgacctcaaggcaaag 334 Query: 291 tgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcgcg 350 ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 335 tgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcgcc 394 Query: 351 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtcccgttgctccccaagctc 410 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| || Sbjct: 395 ctctggctcaccaccgtcgtcgtcggcgccatcaactccgtgccgctgctccccaagatc 454 Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| || || ||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 455 ctggagctcgtcggcctcggctacaccggctggttcgtctaccgctacctcctcttcaag 514 Query: 471 gaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaac 529 || ||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| Sbjct: 515 gagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaac 573 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Plus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 119 gccacggcgtacaccgtggcgctcctcggcg 149
>gb|DQ244277.1| Zea mays clone 4115 mRNA sequence Length = 763 Score = 305 bits (154), Expect = 1e-79 Identities = 298/346 (86%) Strand = Plus / Plus Query: 193 tccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcctccgacgacacgtcgg 252 |||||||||| ||||||| ||||||||||| | |||||| || ||||| ||||| |||| Sbjct: 127 tccaagatgcaccgaggctctccctgctccgtgcgaaggccgcttccgaggacacatcgg 186 Query: 253 cgagcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgattgaggacaagc 312 | |||||| ||| | |||||||||||||| | ||||||||| || |||||||||||| Sbjct: 187 cctccggcgacgagttgatcgaggacctcaaagcgaagtgggacgccgttgaggacaagc 246 Query: 313 ccaccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcaccaccgtcgtcg 372 ||||| ||||| | ||| |||||||||| |||||||| |||||||| || |||| |||| Sbjct: 247 ccaccgtcctcttgtacggcggcggcgccgtcgtcgccctctggctgacgtccgtggtcg 306 Query: 373 tcggcgccatcaactccgtcccgttgctccccaagctcctggagctggttgggctcgggt 432 | |||||||||||| |||| ||| ||||||||||| |||||||||| ||||||||||| | Sbjct: 307 tgggcgccatcaacgccgtgccgctgctccccaagatcctggagctcgttgggctcggct 366 Query: 433 acaccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaagagttggcca 492 ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 367 acaccggctggttcgtgtaccgttaccttctcttcaaggaaagcaggaaagagttggccg 426 Query: 493 ccgacatcgagagcttcaagaagaagatcgcaggaacagaataaac 538 ||||||| |||| ||| ||||| || || || |||||||||||||| Sbjct: 427 ccgacattgagaccttgaagaaaaaaatagctggaacagaataaac 472 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Plus Query: 72 atggctgccacggcgtactccgtggccctcctcggcgg 109 ||||| |||||||||||||||| ||| ||||||||||| Sbjct: 24 atggcggccacggcgtactccggggcgctcctcggcgg 61
>gb|AY107335.1| Zea mays PCO136292 mRNA sequence Length = 683 Score = 297 bits (150), Expect = 3e-77 Identities = 297/346 (85%) Strand = Plus / Plus Query: 193 tccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcctccgacgacacgtcgg 252 |||||||||| ||||||| ||||||||||| | |||||| || ||||| ||||| |||| Sbjct: 183 tccaagatgcaccgaggctctccctgctccgtgcgaaggccgcttccgaggacacatcgg 242 Query: 253 cgagcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgattgaggacaagc 312 | |||||| ||| | |||||||||||||| | ||||||||| || |||||||||||| Sbjct: 243 cctccggcgacgagttgatcgaggacctcaaagcgaagtgggacgccgttgaggacaagc 302 Query: 313 ccaccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcaccaccgtcgtcg 372 ||||| ||||| | ||| |||||||||| |||||||| || ||||| || |||| |||| Sbjct: 303 ccaccgtcctcttgtacggcggcggcgccgtcgtcgccctatggctgacgtccgtggtcg 362 Query: 373 tcggcgccatcaactccgtcccgttgctccccaagctcctggagctggttgggctcgggt 432 | |||||||||||| |||| ||| ||||||||||| |||||||||| ||||||||||| | Sbjct: 363 tgggcgccatcaacgccgtgccgctgctccccaagatcctggagctcgttgggctcggct 422 Query: 433 acaccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaagagttggcca 492 ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 423 acaccggctggttcgtgtaccgctaccttctctttaaggaaagcaggaaagagttggccg 482 Query: 493 ccgacatcgagagcttcaagaagaagatcgcaggaacagaataaac 538 ||||||| |||| ||| ||||| || || || |||||||||||||| Sbjct: 483 ccgacattgagaccttgaagaaaaaaatagctggaacagaataaac 528 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 72 atggctgccacggcgtactccgtggccctcctcggcgg 109 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 80 atggcggccacggcgtactccgtggcgctcctcggcgg 117
>gb|AY106444.1| Zea mays PCO136291 mRNA sequence Length = 767 Score = 242 bits (122), Expect = 2e-60 Identities = 236/274 (86%) Strand = Plus / Plus Query: 256 gcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgattgaggacaagccca 315 ||||||| ||| ||||||| |||||||||| |||||||| || ||||||||||||||| Sbjct: 284 gcggcgacgagctcatcgaagacctcaaggcaaagtgggacgccgttgaggacaagccca 343 Query: 316 ccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcaccaccgtcgtcgtcg 375 || ||||||| ||| |||||||||| ||||||||||| ||| | || |||| ||||||| Sbjct: 344 ccgtcctcctgtacggcggcggcgccgtcgtcgcgctatggttgacgtccgttgtcgtcg 403 Query: 376 gcgccatcaactccgtcccgttgctccccaagctcctggagctggttgggctcgggtaca 435 ||||||||||| |||| ||| ||||||||||| |||||||||| ||||| ||||| |||| Sbjct: 404 gcgccatcaacgccgtgccgctgctccccaagatcctggagctcgttggcctcggctaca 463 Query: 436 ccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaagagttggccaccg 495 |||| |||||||| ||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 464 ccggctggttcgtctaccgctacctcctcttcaagcaaagcaggaaagagctggtcgacg 523 Query: 496 acatcgagagcttcaagaagaagatcgcaggaac 529 |||| |||| | ||||||| ||||| || ||||| Sbjct: 524 acattgagaccctcaagaaaaagattgctggaac 557 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 72 atggctgccacggcgtactccgtggccctcctcggcgg 109 ||||| |||||||||||||||||||| ||||||||||| Sbjct: 115 atggcggccacggcgtactccgtggcgctcctcggcgg 152
>gb|AY105103.1| Zea mays PCO149145 mRNA sequence Length = 814 Score = 188 bits (95), Expect = 2e-44 Identities = 265/321 (82%), Gaps = 3/321 (0%) Strand = Plus / Plus Query: 186 ctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcctccgacgac 245 ||||| ||||||||||||||||||| ||| ||||||| |||||||| ||||||||||| Sbjct: 229 ctccggctccaagatgcgccgaggctgtcgttgctccgggtgaaggcctcctccgacgac 288 Query: 246 acgtcggc---gagcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgatt 302 | ||||| |||||| || ||| |||||| ||| | || | |||||||| || | Sbjct: 289 tcctcggccgcgagcggggacgagctcatcgccgacttgaaagccaagtgggacgccgtc 348 Query: 303 gaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcacc 362 ||| ||||| ||| ||||| |||| |||||||||||||||||| |||||||| || Sbjct: 349 gagaacaagagcactgtcctcacctacgccggcggcgctgtcgtcgctctctggctgacg 408 Query: 363 accgtcgtcgtcggcgccatcaactccgtcccgttgctccccaagctcctggagctggtt 422 ||||| |||||||||||||||||||||| || ||||||||||| || ||||||| || Sbjct: 409 tccgtcatcgtcggcgccatcaactccgtgcctctgctccccaagatcatggagcttgtc 468 Query: 423 gggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaa 482 || ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 469 ggcctcggctacaccggatggttcgtctaccgctaccttctcttcaaggaaagcaggaaa 528 Query: 483 gagttggccaccgacatcgag 503 ||| | ||| |||||||||| Sbjct: 529 gagctcgccgacgacatcgag 549
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 165 bits (83), Expect = 3e-37 Identities = 98/103 (95%) Strand = Plus / Minus Query: 289 agtgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcg 348 ||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 8763011 agtgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcg 8762952 Query: 349 cgctctggctcaccaccgtcgtcgtcggcgccatcaactccgt 391 | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 8762951 ccctctggctcaccaccgtcgtcgtcggcgccatcaactccgt 8762909 Score = 91.7 bits (46), Expect = 4e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 398 gctccccaagctcctggagctggttgggctcgggtacaccgggtggttcgtgtaccgcta 457 |||||||||| |||||||||| || || ||||| |||||||| |||||||| |||||||| Sbjct: 8762815 gctccccaagatcctggagctcgtcggcctcggctacaccggctggttcgtctaccgcta 8762756 Query: 458 cctcctcttcaagg 471 |||||||||||||| Sbjct: 8762755 cctcctcttcaagg 8762742 Score = 81.8 bits (41), Expect = 4e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 469 aggaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaa 528 |||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||| Sbjct: 8762537 aggagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaa 8762478 Query: 529 c 529 | Sbjct: 8762477 c 8762477 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 8763208 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 8763149 Query: 237 tccgacgacac 247 ||||||||||| Sbjct: 8763148 tccgacgacac 8763138 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Minus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 8763304 gccacggcgtacaccgtggcgctcctcggcg 8763274
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1001_B06 Length = 134810 Score = 165 bits (83), Expect = 3e-37 Identities = 98/103 (95%) Strand = Plus / Minus Query: 289 agtgggaggcgattgaggacaagcccaccttcctcctctacagcggcggcgctgtcgtcg 348 ||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 33332 agtgggaggcgatcgaggacaagccgacgttcctcctctacagcggcggcgccgtcgtcg 33273 Query: 349 cgctctggctcaccaccgtcgtcgtcggcgccatcaactccgt 391 | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 33272 ccctctggctcaccaccgtcgtcgtcggcgccatcaactccgt 33230 Score = 91.7 bits (46), Expect = 4e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 398 gctccccaagctcctggagctggttgggctcgggtacaccgggtggttcgtgtaccgcta 457 |||||||||| |||||||||| || || ||||| |||||||| |||||||| |||||||| Sbjct: 33136 gctccccaagatcctggagctcgtcggcctcggctacaccggctggttcgtctaccgcta 33077 Query: 458 cctcctcttcaagg 471 |||||||||||||| Sbjct: 33076 cctcctcttcaagg 33063 Score = 81.8 bits (41), Expect = 4e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 469 aggaaagcaggaaagagttggccaccgacatcgagagcttcaagaagaagatcgcaggaa 528 |||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||| Sbjct: 32858 aggagagcaggaaagagttggcgaccgacatcgagaccttgaagaagaagatcgctggaa 32799 Query: 529 c 529 | Sbjct: 32798 c 32798 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 177 ctccacccgctccgcctccaagatgcgccgaggccgtccctgctccgcgtgaaggcggcc 236 ||||| ||||| |||||||| || |||||| | | ||||||||||||||| | ||| ||| Sbjct: 33529 ctccaaccgctgcgcctccaggacgcgccgcgactgtccctgctccgcgtcagggccgcc 33470 Query: 237 tccgacgacac 247 ||||||||||| Sbjct: 33469 tccgacgacac 33459 Score = 46.1 bits (23), Expect = 0.20 Identities = 29/31 (93%) Strand = Plus / Minus Query: 78 gccacggcgtactccgtggccctcctcggcg 108 |||||||||||| ||||||| |||||||||| Sbjct: 33625 gccacggcgtacaccgtggcgctcctcggcg 33595
>emb|CT830637.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015A24, full insert sequence Length = 717 Score = 143 bits (72), Expect = 1e-30 Identities = 198/240 (82%) Strand = Plus / Plus Query: 252 gcgagcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgattgaggacaag 311 |||| |||||| ||| ||||||| ||||| || | |||||||| || ||||| ||||| Sbjct: 243 gcgaccggcgacgagctcatcgaagacctgaaagctaagtgggacgccgttgagaacaag 302 Query: 312 cccaccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcaccaccgtcgtc 371 ||||| ||||| ||| ||||||||| ||||||| |||||||| | ||||| || Sbjct: 303 tccaccgtcctcacgtacgccggcggcgccatcgtcgccctctggctgtcgtccgtcatc 362 Query: 372 gtcggcgccatcaactccgtcccgttgctccccaagctcctggagctggttgggctcggg 431 ||||||||| |||| ||||| || |||| |||||| || ||||||| || ||||||||| Sbjct: 363 gtcggcgccgtcaattccgtgcctctgcttcccaagttcatggagctcgtcgggctcggg 422 Query: 432 tacaccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaagagttggcc 491 ||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 423 tacacaggctggtttgtgtaccgctacctcctcttcaaggaaagcaggaaggaattggcc 482
>emb|CT830636.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011A07, full insert sequence Length = 773 Score = 143 bits (72), Expect = 1e-30 Identities = 198/240 (82%) Strand = Plus / Plus Query: 252 gcgagcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgattgaggacaag 311 |||| |||||| ||| ||||||| ||||| || | |||||||| || ||||| ||||| Sbjct: 298 gcgaccggcgacgagctcatcgaagacctgaaagctaagtgggacgccgttgagaacaag 357 Query: 312 cccaccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcaccaccgtcgtc 371 ||||| ||||| ||| ||||||||| ||||||| |||||||| | ||||| || Sbjct: 358 tccaccgtcctcacgtacgccggcggcgccatcgtcgccctctggctgtcgtccgtcatc 417 Query: 372 gtcggcgccatcaactccgtcccgttgctccccaagctcctggagctggttgggctcggg 431 ||||||||| |||| ||||| || |||| |||||| || ||||||| || ||||||||| Sbjct: 418 gtcggcgccgtcaattccgtgcctctgcttcccaagttcatggagctcgtcgggctcggg 477 Query: 432 tacaccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaagagttggcc 491 ||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 478 tacacaggctggtttgtgtaccgctacctcctcttcaaggaaagcaggaaggaattggcc 537
>emb|CT830635.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN007I03, full insert sequence Length = 714 Score = 143 bits (72), Expect = 1e-30 Identities = 198/240 (82%) Strand = Plus / Plus Query: 252 gcgagcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgattgaggacaag 311 |||| |||||| ||| ||||||| ||||| || | |||||||| || ||||| ||||| Sbjct: 262 gcgaccggcgacgagctcatcgaagacctgaaagctaagtgggacgccgttgagaacaag 321 Query: 312 cccaccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcaccaccgtcgtc 371 ||||| ||||| ||| ||||||||| ||||||| |||||||| | ||||| || Sbjct: 322 tccaccgtcctcacgtacgccggcggcgccatcgtcgccctctggctgtcgtccgtcatc 381 Query: 372 gtcggcgccatcaactccgtcccgttgctccccaagctcctggagctggttgggctcggg 431 ||||||||| |||| ||||| || |||| |||||| || ||||||| || ||||||||| Sbjct: 382 gtcggcgccgtcaattccgtgcctctgcttcccaagttcatggagctcgtcgggctcggg 441 Query: 432 tacaccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaagagttggcc 491 ||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 442 tacacaggctggtttgtgtaccgctacctcctcttcaaggaaagcaggaaggaattggcc 501
>ref|NM_001054556.1| Oryza sativa (japonica cultivar-group) Os02g0731600 (Os02g0731600) mRNA, partial cds Length = 523 Score = 143 bits (72), Expect = 1e-30 Identities = 198/240 (82%) Strand = Plus / Plus Query: 252 gcgagcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgattgaggacaag 311 |||| |||||| ||| ||||||| ||||| || | |||||||| || ||||| ||||| Sbjct: 45 gcgaccggcgacgagctcatcgaagacctgaaagctaagtgggacgccgttgagaacaag 104 Query: 312 cccaccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcaccaccgtcgtc 371 ||||| ||||| ||| ||||||||| || |||| |||||||| | ||||| || Sbjct: 105 tccaccgtcctcacgtacgccggcggcgccatcatcgccctctggctgtcgtccgtcatc 164 Query: 372 gtcggcgccatcaactccgtcccgttgctccccaagctcctggagctggttgggctcggg 431 ||||||||| |||||||||| || |||| |||||| || ||||||| || ||||||||| Sbjct: 165 gtcggcgccgtcaactccgtgcctctgcttcccaagttcatggagctcgtcgggctcggg 224 Query: 432 tacaccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaagagttggcc 491 ||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 225 tacacaggctggtttgtgtaccgctacctcctcttcaaggaaagcaggaaggaattggcc 284
>dbj|AK058271.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B08, full insert sequence Length = 523 Score = 143 bits (72), Expect = 1e-30 Identities = 198/240 (82%) Strand = Plus / Plus Query: 252 gcgagcggcgatgagatcatcgaggacctcaaggggaagtgggaggcgattgaggacaag 311 |||| |||||| ||| ||||||| ||||| || | |||||||| || ||||| ||||| Sbjct: 45 gcgaccggcgacgagctcatcgaagacctgaaagctaagtgggacgccgttgagaacaag 104 Query: 312 cccaccttcctcctctacagcggcggcgctgtcgtcgcgctctggctcaccaccgtcgtc 371 ||||| ||||| ||| ||||||||| || |||| |||||||| | ||||| || Sbjct: 105 tccaccgtcctcacgtacgccggcggcgccatcatcgccctctggctgtcgtccgtcatc 164 Query: 372 gtcggcgccatcaactccgtcccgttgctccccaagctcctggagctggttgggctcggg 431 ||||||||| |||||||||| || |||| |||||| || ||||||| || ||||||||| Sbjct: 165 gtcggcgccgtcaactccgtgcctctgcttcccaagttcatggagctcgtcgggctcggg 224 Query: 432 tacaccgggtggttcgtgtaccgctacctcctcttcaaggaaagcaggaaagagttggcc 491 ||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 225 tacacaggctggtttgtgtaccgctacctcctcttcaaggaaagcaggaaggaattggcc 284
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 83.8 bits (42), Expect = 9e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 402 cccaagctcctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctc 461 |||||| || ||||||| || |||||||||||||| || ||||| ||||||||||||||| Sbjct: 30491105 cccaagttcatggagctcgtcgggctcgggtacacaggctggtttgtgtaccgctacctc 30491164 Query: 462 ctcttcaagg 471 |||||||||| Sbjct: 30491165 ctcttcaagg 30491174
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 83.8 bits (42), Expect = 9e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 402 cccaagctcctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctc 461 |||||| || ||||||| || |||||||||||||| || ||||| ||||||||||||||| Sbjct: 3113 cccaagttcatggagctcgtcgggctcgggtacacaggctggtttgtgtaccgctacctc 3172 Query: 462 ctcttcaagg 471 |||||||||| Sbjct: 3173 ctcttcaagg 3182
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 83.8 bits (42), Expect = 9e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 402 cccaagctcctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctc 461 |||||| || ||||||| || |||||||||||||| || ||||| ||||||||||||||| Sbjct: 97153 cccaagttcatggagctcgtcgggctcgggtacacaggctggtttgtgtaccgctacctc 97212 Query: 462 ctcttcaagg 471 |||||||||| Sbjct: 97213 ctcttcaagg 97222
>emb|CT830366.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA046E10, full insert sequence Length = 1057 Score = 63.9 bits (32), Expect = 9e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| |||||||| || ||| | || ||||| |||||||||||||| ||||||||| Sbjct: 564 ctggagctagttgggcttggctactcgggatggtttgtgtaccgctacctgctcttcaag 623 Query: 471 gaaa 474 |||| Sbjct: 624 gaaa 627
>ref|NM_001068392.1| Oryza sativa (japonica cultivar-group) Os08g0430600 (Os08g0430600) mRNA, complete cds Length = 1079 Score = 63.9 bits (32), Expect = 9e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| |||||||| || ||| | || ||||| |||||||||||||| ||||||||| Sbjct: 495 ctggagctagttgggcttggctactcgggatggtttgtgtaccgctacctgctcttcaag 554 Query: 471 gaaa 474 |||| Sbjct: 555 gaaa 558
>dbj|AK068922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B19, full insert sequence Length = 1040 Score = 63.9 bits (32), Expect = 9e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| |||||||| || ||| | || ||||| |||||||||||||| ||||||||| Sbjct: 568 ctggagctagttgggcttggctactcgggatggtttgtgtaccgctacctgctcttcaag 627 Query: 471 gaaa 474 |||| Sbjct: 628 gaaa 631
>dbj|AK060045.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G06, full insert sequence Length = 1079 Score = 63.9 bits (32), Expect = 9e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| |||||||| || ||| | || ||||| |||||||||||||| ||||||||| Sbjct: 495 ctggagctagttgggcttggctactcgggatggtttgtgtaccgctacctgctcttcaag 554 Query: 471 gaaa 474 |||| Sbjct: 555 gaaa 558
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 58.0 bits (29), Expect = 5e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| |||||||| || ||| | || ||||| |||||||||||||| ||||||||| Sbjct: 20811024 ctggagctagttgggcttggctactcgggatggtttgtgtaccgctacctgctcttcaag 20810965 Query: 471 g 471 | Sbjct: 20810964 g 20810964
>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1124_B05 Length = 109917 Score = 58.0 bits (29), Expect = 5e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 411 ctggagctggttgggctcgggtacaccgggtggttcgtgtaccgctacctcctcttcaag 470 |||||||| |||||||| || ||| | || ||||| |||||||||||||| ||||||||| Sbjct: 42157 ctggagctagttgggcttggctactcgggatggtttgtgtaccgctacctgctcttcaag 42098 Query: 471 g 471 | Sbjct: 42097 g 42097
>gb|AC008082.12| Homo sapiens 3 BAC RP11-73N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171619 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 636 ttacatatatgtatgtatgaaaagaaatgc 665 |||||||||||||| ||||||||||||||| Sbjct: 88815 ttacatatatgtatatatgaaaagaaatgc 88844
>ref|NM_001054720.1| Oryza sativa (japonica cultivar-group) Os02g0759900 (Os02g0759900) mRNA, complete cds Length = 989 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Plus Query: 456 tacctcctcttcaaggaaagcagg 479 |||||||||||||||||||||||| Sbjct: 618 tacctcctcttcaaggaaagcagg 641
>dbj|AK059854.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H06, full insert sequence Length = 988 Score = 48.1 bits (24), Expect = 0.051 Identities = 24/24 (100%) Strand = Plus / Plus Query: 456 tacctcctcttcaaggaaagcagg 479 |||||||||||||||||||||||| Sbjct: 617 tacctcctcttcaaggaaagcagg 640
>emb|CT830412.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN060D07, full insert sequence Length = 1043 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 456 tacctcctcttcaaggaaagcag 478 ||||||||||||||||||||||| Sbjct: 654 tacctcctcttcaaggaaagcag 676
>gb|AC124397.5| Mus musculus BAC clone RP24-348J16 from chromosome 13, complete sequence Length = 191713 Score = 46.1 bits (23), Expect = 0.20 Identities = 26/27 (96%) Strand = Plus / Plus Query: 627 atttgtgtgttacatatatgtatgtat 653 ||||||||||||||||| ||||||||| Sbjct: 125258 atttgtgtgttacatatctgtatgtat 125284
>emb|CT954316.4| N.leucogenys DNA sequence from clone CH271-411O5, complete sequence Length = 178585 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 719 ttctatttctttctatataaat 740 |||||||||||||||||||||| Sbjct: 136229 ttctatttctttctatataaat 136208
>emb|CT954317.3| N.leucogenys DNA sequence from clone CH271-467F13, complete sequence Length = 114392 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 719 ttctatttctttctatataaat 740 |||||||||||||||||||||| Sbjct: 39229 ttctatttctttctatataaat 39250
>gb|BT013316.1| Lycopersicon esculentum clone 135001R, mRNA sequence Length = 808 Score = 44.1 bits (22), Expect = 0.80 Identities = 31/34 (91%) Strand = Plus / Plus Query: 437 cgggtggttcgtgtaccgctacctcctcttcaag 470 ||||||||| || ||||||||||| ||||||||| Sbjct: 515 cgggtggtttgtctaccgctaccttctcttcaag 548
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 365 cgtcgtcgtcggcgccatcaac 386 |||||||||||||||||||||| Sbjct: 1680168 cgtcgtcgtcggcgccatcaac 1680189
>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene, partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX (cooX), CooU (cooU), CooH (cooH), iron sulfur protein (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC), CooT (cooT), CooJ (cooJ), putative transcriptional activator; similar to cAMP-receptor (CAP, CRP) protein: PIR Accession Number A26049; similar to fnr (nirR) gene product encoded by GenBank Accession Number J01608; aspartic acid-rich C-terminus similar to acidic region of HMG (high mobility group) protei (cooA), and nicotinate-nucleotide pyrophosphorylase (nadC) genes, complete cds; L-aspartate oxidase (nadB) gene, partial cds; and unknown gene Length = 16259 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 365 cgtcgtcgtcggcgccatcaac 386 |||||||||||||||||||||| Sbjct: 4352 cgtcgtcgtcggcgccatcaac 4373
>emb|CR318632.9| Zebrafish DNA sequence from clone CH211-113N10 in linkage group 5, complete sequence Length = 143278 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 724 tttctttctatataaatgtgttcata 749 ||||||||||||||||||| |||||| Sbjct: 56813 tttctttctatataaatgtcttcata 56788
>gb|AC006196.3|AC006196 Homo sapiens, clone hRPK.1_A_1, complete sequence Length = 181949 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 719 ttctatttctttctatataaat 740 |||||||||||||||||||||| Sbjct: 93999 ttctatttctttctatataaat 93978
>gb|AC117767.13| Mus musculus chromosome 1, clone RP24-507O16, complete sequence Length = 192892 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 630 tgtgtgttacatatatgtatgt 651 |||||||||||||||||||||| Sbjct: 160952 tgtgtgttacatatatgtatgt 160931
>emb|Z81102.1|CEM02B1 Caenorhabditis elegans Cosmid M02B1, complete sequence Length = 28364 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 641 tatatgtatgtatgaaaagaaa 662 |||||||||||||||||||||| Sbjct: 19621 tatatgtatgtatgaaaagaaa 19600
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 497 catcgagagcttcaagaagaag 518 |||||||||||||||||||||| Sbjct: 1275806 catcgagagcttcaagaagaag 1275785
>gb|AC154571.3| Mus musculus BAC clone RP23-389N20 from chromosome 16, complete sequence Length = 197665 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 630 tgtgtgttacatatatgtatgtatg 654 |||||||||||||||||| |||||| Sbjct: 8458 tgtgtgttacatatatgtgtgtatg 8434
>ref|XM_001223753.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_04540) mRNA, complete cds Length = 1782 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 359 caccaccgtcgtcgtcggcgccatc 383 ||||||| ||||||||||||||||| Sbjct: 1227 caccaccatcgtcgtcggcgccatc 1251
>gb|AC187590.3| Gallus gallus BAC clone CH261-150P15 from chromosome z, complete sequence Length = 163618 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 712 ggaattcttctatttctttct 732 ||||||||||||||||||||| Sbjct: 45494 ggaattcttctatttctttct 45514
>gb|AC145791.3| Xenopus tropicalis clone CH216-136M10, complete sequence Length = 138152 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 718 cttctatttctttctatataa 738 ||||||||||||||||||||| Sbjct: 80096 cttctatttctttctatataa 80116
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 640 atatatgtatgtatgaaaaga 660 ||||||||||||||||||||| Sbjct: 5184228 atatatgtatgtatgaaaaga 5184208
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 639 catatatgtatgtatgaaaagaaat 663 |||||||||||||||| |||||||| Sbjct: 11597527 catatatgtatgtatgcaaagaaat 11597503
>gb|AC145802.3| Xenopus tropicalis clone CH216-80C17, complete sequence Length = 163886 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 777 ttatatgaataaaatgaaact 797 ||||||||||||||||||||| Sbjct: 42403 ttatatgaataaaatgaaact 42383
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 ccaccgtcgtcgtcggcgcca 381 ||||||||||||||||||||| Sbjct: 4455834 ccaccgtcgtcgtcggcgcca 4455854
>gb|AC163612.3| Mus musculus BAC clone RP23-89N5 from chromosome 16, complete sequence Length = 207953 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 630 tgtgtgttacatatatgtatgtatg 654 |||||||||||||||||| |||||| Sbjct: 140019 tgtgtgttacatatatgtgtgtatg 139995
>gb|AE014826.1| Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence Length = 250663 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 640 atatatgtatgtatgaaaagaaatg 664 ||||||||||||||||||| ||||| Sbjct: 129085 atatatgtatgtatgaaaaaaaatg 129109
>gb|AC119953.15| Mus musculus chromosome 16, clone RP24-449J13, complete sequence Length = 156473 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 634 tgttacatatatgtatgtatg 654 ||||||||||||||||||||| Sbjct: 90033 tgttacatatatgtatgtatg 90013
>gb|AC116839.8| Mus musculus chromosome 8, clone RP24-390L13, complete sequence Length = 142874 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 714 aattcttctatttctttctat 734 ||||||||||||||||||||| Sbjct: 106335 aattcttctatttctttctat 106355
>gb|AC111104.10| Mus musculus chromosome 3, clone RP23-187F18, complete sequence Length = 222158 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 637 tacatatatgtatgtatgaaa 657 ||||||||||||||||||||| Sbjct: 13148 tacatatatgtatgtatgaaa 13128
>gb|AC118047.7| Mus musculus chromosome 3, clone RP24-219P20, complete sequence Length = 159930 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 637 tacatatatgtatgtatgaaa 657 ||||||||||||||||||||| Sbjct: 121100 tacatatatgtatgtatgaaa 121080
>gb|AY534905.1|AY534902S4 Gallus gallus growth hormone receptor gene, intron 7 Length = 2071 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 712 ggaattcttctatttctttct 732 ||||||||||||||||||||| Sbjct: 413 ggaattcttctatttctttct 433
>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0088K21, complete sequence Length = 153239 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 713 gaattcttctatttctttcta 733 ||||||||||||||||||||| Sbjct: 77160 gaattcttctatttctttcta 77140
>gb|AC115900.11| Mus musculus chromosome 6, clone RP24-464A7, complete sequence Length = 175003 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 atatgtatgtatgaaaagaaa 662 ||||||||||||||||||||| Sbjct: 153511 atatgtatgtatgaaaagaaa 153491
>gb|AY468380.1| Gallus gallus growth hormone receptor gene, exons 7, 8 and partial cds Length = 2325 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 712 ggaattcttctatttctttct 732 ||||||||||||||||||||| Sbjct: 582 ggaattcttctatttctttct 602
>gb|AC160536.4| Mus musculus chromosome 8, clone RP24-92K22, complete sequence Length = 202719 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 714 aattcttctatttctttctat 734 ||||||||||||||||||||| Sbjct: 170066 aattcttctatttctttctat 170046
>gb|AC023712.5| Drosophila melanogaster X BAC RP98-1M22 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170129 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 640 atatatgtatgtatgaaaaga 660 ||||||||||||||||||||| Sbjct: 109820 atatatgtatgtatgaaaaga 109800
>ref|NM_001076946.1| Bos taurus hypothetical protein LOC617651 (LOC617651), mRNA gb|BC111305.1| Bos taurus hypothetical protein LOC617651, mRNA (cDNA clone MGC:134376 IMAGE:8066632), complete cds Length = 2616 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 tgctccccaagctcctggagc 417 ||||||||||||||||||||| Sbjct: 149 tgctccccaagctcctggagc 129
>dbj|AK081880.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130084G10 product:hypothetical protein, full insert sequence Length = 2127 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 642 atatgtatgtatgaaaagaaa 662 ||||||||||||||||||||| Sbjct: 1927 atatgtatgtatgaaaagaaa 1947
>emb|CT009698.8| Mouse DNA sequence from clone RP23-117P22 on chromosome 16, complete sequence Length = 210485 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 634 tgttacatatatgtatgtatg 654 ||||||||||||||||||||| Sbjct: 200201 tgttacatatatgtatgtatg 200221
>gb|AC104980.5| Homo sapiens chromosome 8, clone RP11-281D17, complete sequence Length = 187226 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 638 acatatatgtatgtatgaaaa 658 ||||||||||||||||||||| Sbjct: 18687 acatatatgtatgtatgaaaa 18667
>gb|AC105193.4| Homo sapiens chromosome 8, clone RP11-379M16, complete sequence Length = 171256 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 638 acatatatgtatgtatgaaaa 658 ||||||||||||||||||||| Sbjct: 135823 acatatatgtatgtatgaaaa 135803
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 713 gaattcttctatttctttcta 733 ||||||||||||||||||||| Sbjct: 22817443 gaattcttctatttctttcta 22817423
>gb|AC009126.2| Homo sapiens chromosome 5 clone RP11-496M2, complete sequence Length = 177978 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 cccaccttcctcctctacagc 332 ||||||||||||||||||||| Sbjct: 61079 cccaccttcctcctctacagc 61059
>gb|AC160828.3| Xenopus tropicalis clone ISB1-25H8 containing DACT1-prov gene, complete cds, complete sequence Length = 59418 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 630 tgtgtgttacatatatgtatg 650 ||||||||||||||||||||| Sbjct: 33219 tgtgtgttacatatatgtatg 33199
>gb|AC010122.7|AC010122 Drosophila melanogaster, chromosome 3R, region 89A-89A, BAC clone BACR06B08, complete sequence Length = 151447 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 639 catatatgtatgtatgaaaagaaat 663 |||||||||||||||| |||||||| Sbjct: 15981 catatatgtatgtatgcaaagaaat 15957
>gb|AC008906.5|AC008906 Homo sapiens chromosome 5 clone CTD-2260A17, complete sequence Length = 151801 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 cccaccttcctcctctacagc 332 ||||||||||||||||||||| Sbjct: 133947 cccaccttcctcctctacagc 133927
>gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, complete sequence Length = 143642 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 725 ttctttctatataaatgtgttcata 749 |||||||||||||||||| |||||| Sbjct: 118216 ttctttctatataaatgttttcata 118192
>emb|Y09699.1|ST09699 Solanum tuberosum mRNA for putative inward rectifying potassium channel, SKT2 Length = 2720 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 575 taattatgtaatggaagaaga 595 ||||||||||||||||||||| Sbjct: 83 taattatgtaatggaagaaga 63
>emb|BX322794.6| Zebrafish DNA sequence from clone RP71-44B8 in linkage group 23, complete sequence Length = 144572 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 779 atatgaataaaatgaaactcg 799 ||||||||||||||||||||| Sbjct: 50342 atatgaataaaatgaaactcg 50362
>gb|AC016681.2|AC016681 Homo sapiens BAC clone RP11-62H15 from Y, complete sequence Length = 68726 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 630 tgtgtgttacatatatgtatgtatgaaaa 658 ||||||| | ||||||||||||||||||| Sbjct: 25574 tgtgtgtcatatatatgtatgtatgaaaa 25602
>gb|AC009073.8| Homo sapiens chromosome 5 clone RP11-31O11, complete sequence Length = 177978 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 cccaccttcctcctctacagc 332 ||||||||||||||||||||| Sbjct: 61079 cccaccttcctcctctacagc 61059
>emb|BX005006.10| Zebrafish DNA sequence from clone DKEY-47K14, complete sequence Length = 232594 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 627 atttgtgtgttacatatatgtatgtatga 655 ||||||||||||||||||| ||| ||||| Sbjct: 168548 atttgtgtgttacatatatttatttatga 168520
>gb|AC154743.2| Mus musculus BAC clone RP24-392N10 from 13, complete sequence Length = 141272 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 627 atttgtgtgttacatatatgtatgtatga 655 |||| ||||||| |||||||||||||||| Sbjct: 105551 atttctgtgttatatatatgtatgtatga 105579
>gb|AC115849.13| Mus musculus chromosome 6, clone RP24-249N21, complete sequence Length = 130241 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 atatgtatgtatgaaaagaaa 662 ||||||||||||||||||||| Sbjct: 17897 atatgtatgtatgaaaagaaa 17877
>gb|AC006414.6|AC006414 Drosophila melanogaster, chromosome 3R, region 89A1-89A5, BAC clone BACR48G17, complete sequence Length = 179122 Score = 42.1 bits (21), Expect = 3.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 639 catatatgtatgtatgaaaagaaat 663 |||||||||||||||| |||||||| Sbjct: 126994 catatatgtatgtatgcaaagaaat 126970
>gb|AF119361.1|AF119361 Frankia sp. EuIK1 NifK (nifK), NifE (nifE), NifN (nifN), NifX (nifX), NifW (nifW), NifZ (nifZ), NifB (nifB), NifV (nifV), NifS (nifS), ferredoxin oxidoreductase a-subunit, ferredoxin oxidoreductase b-subunit, and ferredoxin I (fdxI) genes, complete cds; and unknown genes Length = 15056 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ccaccgtcgtcgtcggcgcca 381 ||||||||||||||||||||| Sbjct: 4026 ccaccgtcgtcgtcggcgcca 4006
>emb|AL845287.10| Zebrafish DNA sequence from clone DKEY-78K11, complete sequence Length = 174301 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 779 atatgaataaaatgaaactcg 799 ||||||||||||||||||||| Sbjct: 91586 atatgaataaaatgaaactcg 91606
>emb|CT025552.9| Mouse DNA sequence from clone RP24-270A4 on chromosome 13, complete sequence Length = 206266 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 627 atttgtgtgttacatatatgtatgtatga 655 |||| ||||||| |||||||||||||||| Sbjct: 109597 atttctgtgttatatatatgtatgtatga 109569
>emb|AL590492.7| Human DNA sequence from clone RP11-88H5 on chromosome X, complete sequence Length = 129357 Score = 42.1 bits (21), Expect = 3.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 630 tgtgtgttacatatatgtatgtatgaaaa 658 ||||||| | ||||||||||||||||||| Sbjct: 66788 tgtgtgtcatatatatgtatgtatgaaaa 66816
>dbj|AP004289.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1844F2 Length = 151991 Score = 42.1 bits (21), Expect = 3.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 638 acatatatgtatgtatgaaaa 658 ||||||||||||||||||||| Sbjct: 51852 acatatatgtatgtatgaaaa 51872 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 137,484,939 Number of extensions: 8943204 Number of successful extensions: 269063 Number of sequences better than 10.0: 86 Number of HSP's gapped: 269063 Number of HSP's successfully gapped: 112 Length of query: 835 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 813 Effective length of database: 18,508,616,841 Effective search space: 15047505491733 Effective search space used: 15047505491733 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)