>P82658:TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplast precursor -|
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 229
 Score =  219 bits (557), Expect = 1e-56
 Identities = 104/150 (69%), Positives = 122/150 (81%)
 Frame = +3

Query: 324 KRDAAEYVYDVPEGWKERLVSKVEKGTNGTDSEFFNPRKRSEREYLTFLSGFRKLAPVGA 503
           ++ +AEYVYDVPEGWKERLVSKVEKGTNGTDSEF+NP+K++E+EYLTFL+GFR+LAP   
Sbjct: 80  RKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDV 139

Query: 504 VLDNLALSDVGLQDQISSADDVTSAERKDADGQVYYEYEVAGAGAHSLISVTCARNKLYA 683
           +L+NLALSDV LQD I+ AD V S ERKD  GQVYY YE+ G G HSLI+VTC++N+LYA
Sbjct: 140 ILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNRLYA 199

Query: 684 HFVTAPNPEWGRDEAVLRRLHQSFKTVDFS 773
           HFV AP PEW RD   L  L  SFKTV  S
Sbjct: 200 HFVNAPAPEWNRDHDTLTHLRDSFKTVSSS 229

>O49292:TL30_ARATH Thylakoid lumenal 29.8 kDa protein, chloroplast precursor -|
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 274

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 15/156 (9%)
 Frame = +3

Query: 342 YVYDVPEGWKERLVSKVEKGTNGTDSEFFNPRKRSEREYLTFLSGFRKLAPVGAVLDNLA 521
           Y + VP+ W E  VS  + G    D  F +P++      L+ +     +APV    DNL 
Sbjct: 130 YAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGR----LSVI-----VAPVLRFADNLG 180

Query: 522 ----LSDVGLQDQISSA-----------DDVTSAERKDADGQVYYEYEVAGAGAHSLISV 656
               + ++G   ++ +A             V S+   + DG++YY++E+     H LI+ 
Sbjct: 181 DDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPP--HVLITA 238

Query: 657 TCARNKLYAHFVTAPNPEWGRDEAVLRRLHQSFKTV 764
           T A N+LY   VT    +W R    L+R+  SF+ V
Sbjct: 239 TAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 274

>Q14669:TRIPC_HUMAN Probable E3 ubiquitin-protein ligase TRIP12 - Homo sapiens (Human)|
          Length = 1992

 Score = 32.3 bits (72), Expect = 2.6
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = -3

Query: 742 RRRRTASSRPHSGLGAVTKCAYSLFRAHVTEMRLCAPAPATSYS*YTCPSASFRSADVTS 563
           +R+RT SS   SG G+ +  A         E R   P    S S     SA    + +T 
Sbjct: 148 KRKRTESSCVKSGSGSESTGA---------EERSAKPTKLASKS---ATSAKAGCSTITD 195

Query: 562 SADEIWSCSPTSERARLSSTAPTGASLR--NPERKVRYSRS 446
           S+    + S +S  A  SST P GA ++    + K R SRS
Sbjct: 196 SSSAASTSSSSSAVASASSTVPPGARVKQGKDQNKARRSRS 236

>P82538:TL26_ARATH Thylakoid lumenal 25.6 kDa protein, chloroplast precursor -|
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 230

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 5/149 (3%)
 Frame = +3

Query: 327 RDAAEYVYDVPEGWKERLVSKVEKGTNGTDSEFFNPRKRSEREYL-TFLSGFRKLAPVGA 503
           +DA  ++Y  P GW+E ++    +G +    +   P +      + T     ++  P   
Sbjct: 88  KDAYAFLY--PFGWQEVVI----EGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQ 141

Query: 504 VLDNLALSDVGLQDQISSADDVTSAERKDADGQVYYEYE----VAGAGAHSLISVTCARN 671
           + + L    +   +Q ++  D   A   D DG+ YY++E          H+L ++T    
Sbjct: 142 IAETLIKKVLAPPNQKTTLID---ASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNG 198

Query: 672 KLYAHFVTAPNPEWGRDEAVLRRLHQSFK 758
             Y     A    W + +  L  +  SFK
Sbjct: 199 NFYTLTTGANERRWEKMKDRLHTVVDSFK 227

>P10863:TIR1_YEAST Cold shock-induced protein TIR1 precursor - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 254

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
 Frame = -3

Query: 598 PSASFRSADVTSSADEIWSCSPTSERARLSSTAPTGASLRNPERKVRYSRSERLRGLKNS 419
           P+    + D +SSA    S +PTS  A  SS APT ++  +       S +      K+S
Sbjct: 104 PALKSLNGDASSSAAPSSSAAPTSSAAPSSSAAPTSSAASSSSEAKSSSAAPSSSEAKSS 163

Query: 418 LSVP---------LVPFSTLDTSRSFHPSGT 353
            + P           P S+   S S  PS T
Sbjct: 164 SAAPSSSEAKSSSAAPSSSEAKSSSAAPSST 194

>Q6AX33:MAST3_XENLA Microtubule-associated serine/threonine-protein kinase 3 - Xenopus|
           laevis (African clawed frog)
          Length = 1482

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 24/82 (29%), Positives = 34/82 (41%)
 Frame = -3

Query: 598 PSASFRSADVTSSADEIWSCSPTSERARLSSTAPTGASLRNPERKVRYSRSERLRGLKNS 419
           PS +   +    S   +  CSP S  + L +  P      N +  V  S S  L    + 
Sbjct: 11  PSLTLDLSPNNQSPTLLSPCSPCSPNSPLQTLHPWSCRSSNRKSLVVGSPSPTLSRPLSP 70

Query: 418 LSVPLVPFSTLDTSRSFHPSGT 353
           LSVP    S LD+ R+F  S +
Sbjct: 71  LSVPTAGSSPLDSPRNFSTSAS 92


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 72,774,243
Number of extensions: 1286662
Number of successful extensions: 4632
Number of sequences better than 10.0: 6
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 6
Length of query: 294
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 182
Effective length of database: 69,965,399
Effective search space: 12733702618
Effective search space used: 12733702618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)