ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf27d24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001051964.1| Oryza sativa (japonica cultivar-group) Os01g0953600 (Os01g0953600) mRNA, complete cds Length = 3014 Score = 547 bits (276), Expect = e-152 Identities = 516/596 (86%) Strand = Plus / Plus Query: 80 catggaggtcgccgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 139 |||||||| ||| ||||||| ||||||| ||||||| |||||| |||||||||||||||| Sbjct: 93 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 152 Query: 140 cagggcgtcctacaaccgcggcctcctccgcgccgcggcggaggtgtgcgaggagtcggt 199 || ||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||| | Sbjct: 153 caaggcctcctacaacggcggcctcctccgcgccgccgcgggggtgtgcgaggagtccat 212 Query: 200 tccggggatgcgcgtggagcacgtggacatctccgcgctgccgctgctcaacaccgacct 259 ||||| ||||||| || ||||| |||||||||| ||||||||||||||||||||||| Sbjct: 213 cccgggcctgcgcgtcgaccacgtcgacatctccggcctgccgctgctcaacaccgacct 272 Query: 260 cgagacgcccgacgggggcttcccgcccgccgtcgaggccttccgcgaccgcatccgcgc 319 |||||| |||| || || ||||| |||||||||||||||||||||||| ||||| Sbjct: 273 cgagaccgccgatggcggattccctcccgccgtcgaggccttccgcgacaaggtccgcca 332 Query: 320 cgccgactgcttcctcttcggctcgccagagtacaactactccatcgcaacccctctgaa 379 |||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| Sbjct: 333 ggccgactgcttcctcttcggatcccccgagtacaactactccatcgcaaccccactgaa 392 Query: 380 gaatgcacttgactgggcttctaggggaaacaattgctgggcagacaaacctgctgccat 439 |||||||||||| ||||||||||| || | |||||||||||||||||||||||||| || Sbjct: 393 gaatgcacttgattgggcttctagagggcaaaattgctgggcagacaaacctgctgcaat 452 Query: 440 tgtcagcgcaggaggtggctttggaggaggtagatcgcagtaccatctccggcaagtcgg 499 |||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||||| Sbjct: 453 tgtcagtgcaggaggtggctttggagggggtagatcacagtaccatcttcgtcaggtcgg 512 Query: 500 ggtgttcttagatcttcatttcatcaacaagccagagctgttcgtccaagcatttcagca 559 ||| || ||||||||||| ||||||||||||||||| || ||| |||||||| |||| Sbjct: 513 ggtatttttagatcttcacttcatcaacaagccagaactagccgtaaaagcatttgagca 572 Query: 560 gccacccaagttcgacagcgatggaaatctgattgacgctgagatcagagagcggatcaa 619 ||| || ||||| ||||| ||||| ||| ||||||| || | |||||||| |||||||| Sbjct: 573 gcctccaaagtttgacagtgatggtaatttgattgatgcgcaaatcagagaacggatcaa 632 Query: 620 gaaagtgctcttgtccctccaggccttcacactcaggatccagaataaggattgaa 675 | |||| ||||| ||||| ||||| |||||||||||| |||| || || ||||||| Sbjct: 633 gcaagttctcttatcccttcaggctttcacactcaggctccaaaagaaagattgaa 688
>dbj|AK071823.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I15, full insert sequence Length = 956 Score = 547 bits (276), Expect = e-152 Identities = 516/596 (86%) Strand = Plus / Plus Query: 80 catggaggtcgccgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 139 |||||||| ||| ||||||| ||||||| ||||||| |||||| |||||||||||||||| Sbjct: 132 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 191 Query: 140 cagggcgtcctacaaccgcggcctcctccgcgccgcggcggaggtgtgcgaggagtcggt 199 || ||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||| | Sbjct: 192 caaggcctcctacaacggcggcctcctccgcgccgccgcgggggtgtgcgaggagtccat 251 Query: 200 tccggggatgcgcgtggagcacgtggacatctccgcgctgccgctgctcaacaccgacct 259 ||||| ||||||| || ||||| |||||||||| ||||||||||||||||||||||| Sbjct: 252 cccgggcctgcgcgtcgaccacgtcgacatctccggcctgccgctgctcaacaccgacct 311 Query: 260 cgagacgcccgacgggggcttcccgcccgccgtcgaggccttccgcgaccgcatccgcgc 319 |||||| |||| || || ||||| |||||||||||||||||||||||| ||||| Sbjct: 312 cgagaccgccgatggcggattccctcccgccgtcgaggccttccgcgacaaggtccgcca 371 Query: 320 cgccgactgcttcctcttcggctcgccagagtacaactactccatcgcaacccctctgaa 379 |||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| Sbjct: 372 ggccgactgcttcctcttcggatcccccgagtacaactactccatcgcaaccccactgaa 431 Query: 380 gaatgcacttgactgggcttctaggggaaacaattgctgggcagacaaacctgctgccat 439 |||||||||||| ||||||||||| || | |||||||||||||||||||||||||| || Sbjct: 432 gaatgcacttgattgggcttctagagggcaaaattgctgggcagacaaacctgctgcaat 491 Query: 440 tgtcagcgcaggaggtggctttggaggaggtagatcgcagtaccatctccggcaagtcgg 499 |||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||||| Sbjct: 492 tgtcagtgcaggaggtggctttggagggggtagatcacagtaccatcttcgtcaggtcgg 551 Query: 500 ggtgttcttagatcttcatttcatcaacaagccagagctgttcgtccaagcatttcagca 559 |||||| ||||||||||| ||||||||||||||||| || ||| |||||||| |||| Sbjct: 552 ggtgtttttagatcttcacttcatcaacaagccagaactagccgtaaaagcatttgagca 611 Query: 560 gccacccaagttcgacagcgatggaaatctgattgacgctgagatcagagagcggatcaa 619 ||| || ||||| ||||| ||||| ||| ||||||| || | |||||||| ||||||| Sbjct: 612 gcctccaaagtttgacagtgatggtaatttgattgatgcgcaaatcagagaacggatcag 671 Query: 620 gaaagtgctcttgtccctccaggccttcacactcaggatccagaataaggattgaa 675 | |||| ||||| ||||| ||||| |||||||||||| |||| || || ||||||| Sbjct: 672 gcaagttctcttatcccttcaggctttcacactcaggctccaaaagaaagattgaa 727
>dbj|AK100697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J09, full insert sequence Length = 3015 Score = 531 bits (268), Expect = e-147 Identities = 514/596 (86%) Strand = Plus / Plus Query: 80 catggaggtcgccgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 139 |||||||| ||| ||||||| ||||||| ||||||| |||||| |||||||||||||||| Sbjct: 93 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 152 Query: 140 cagggcgtcctacaaccgcggcctcctccgcgccgcggcggaggtgtgcgaggagtcggt 199 || ||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||| | Sbjct: 153 caaggcctcctacaacggcggcctcctccgcgccgccgcgggggtgtgcgaggagtccat 212 Query: 200 tccggggatgcgcgtggagcacgtggacatctccgcgctgccgctgctcaacaccgacct 259 ||||| ||||||| || ||||| ||||||||| ||||||||||||||||||||||| Sbjct: 213 cccgggcctgcgcgtcgaccacgtccacatctccggcctgccgctgctcaacaccgacct 272 Query: 260 cgagacgcccgacgggggcttcccgcccgccgtcgaggccttccgcgaccgcatccgcgc 319 |||||| |||| || || ||||| |||||||||||||||||||||||| ||||| Sbjct: 273 cgagaccgccgatggcggattccctcccgccgtcgaggccttccgcgacaaggtccgcca 332 Query: 320 cgccgactgcttcctcttcggctcgccagagtacaactactccatcgcaacccctctgaa 379 |||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| Sbjct: 333 ggccgactgcttcctcttcggatcccccgagtacaactactccatcgcaaccccactgaa 392 Query: 380 gaatgcacttgactgggcttctaggggaaacaattgctgggcagacaaacctgctgccat 439 |||||||||||| ||||||||||| || | |||||||||||||||||||||||||| || Sbjct: 393 gaatgcacttgattgggcttctagagggcaaaattgctgggcagacaaacctgctgcaat 452 Query: 440 tgtcagcgcaggaggtggctttggaggaggtagatcgcagtaccatctccggcaagtcgg 499 |||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||||| Sbjct: 453 tgtcagtgcaggaggtggctttggagggggtagatcacagtaccatcttcgtcaggtcgg 512 Query: 500 ggtgttcttagatcttcatttcatcaacaagccagagctgttcgtccaagcatttcagca 559 ||| || ||||||||||| ||||||||||||||||| || ||| |||||||| |||| Sbjct: 513 ggtatttttagatcttcacttcatcaacaagccagaactagccgtaaaagcatttgagca 572 Query: 560 gccacccaagttcgacagcgatggaaatctgattgacgctgagatcagagagcggatcaa 619 ||| || ||||| ||||| ||||| ||| ||||||| || | |||||||| |||||||| Sbjct: 573 gcctccaaagtttgacagtgatggtaatttgattgatgcgcaaatcagagaacggatcaa 632 Query: 620 gaaagtgctcttgtccctccaggccttcacactcaggatccagaataaggattgaa 675 | |||| ||||| |||| ||||| |||||||||||| |||| || || ||||||| Sbjct: 633 gcaagttctcttaccccttcaggctttcacactcaggctccaaaagaaagattgaa 688
>emb|CT831152.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126C10, full insert sequence Length = 1032 Score = 434 bits (219), Expect = e-118 Identities = 429/499 (85%) Strand = Plus / Plus Query: 177 gcggaggtgtgcgaggagtcggttccggggatgcgcgtggagcacgtggacatctccgcg 236 |||| ||||||||||||||| | ||||| ||||||| || ||||| |||||||||| Sbjct: 301 gcgggggtgtgcgaggagtccatcccgggcctgcgcgtcgaccacgtcgacatctccggc 360 Query: 237 ctgccgctgctcaacaccgacctcgagacgcccgacgggggcttcccgcccgccgtcgag 296 ||||||||||||||||||||||||||||| |||| || || ||||| |||||||||||| Sbjct: 361 ctgccgctgctcaacaccgacctcgagaccgccgatggcggattccctcccgccgtcgag 420 Query: 297 gccttccgcgaccgcatccgcgccgccgactgcttcctcttcggctcgccagagtacaac 356 |||||||||||| ||||| |||||||||||||||||||| || || ||||||||| Sbjct: 421 gccttccgcgacaaggtccgccaggccgactgcttcctcttcggatcccccgagtacaac 480 Query: 357 tactccatcgcaacccctctgaagaatgcacttgactgggcttctaggggaaacaattgc 416 ||||||||||||||||| ||||||||||||||||| ||||||||||| || | |||||| Sbjct: 481 tactccatcgcaaccccactgaagaatgcacttgattgggcttctagagggcaaaattgc 540 Query: 417 tgggcagacaaacctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcg 476 |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct: 541 tgggcagacaaacctgctgcaattgtcagtgcaggaggtggctttggagggggtagatca 600 Query: 477 cagtaccatctccggcaagtcggggtgttcttagatcttcatttcatcaacaagccagag 536 ||||||||||| || || |||||||| || ||||||||||| ||||||||||||||||| Sbjct: 601 cagtaccatcttcgtcaggtcggggtatttttagatcttcacttcatcaacaagccagaa 660 Query: 537 ctgttcgtccaagcatttcagcagccacccaagttcgacagcgatggaaatctgattgac 596 || ||| |||||||| ||||||| || ||||| ||||| ||||| ||| ||||||| Sbjct: 661 ctagccgtaaaagcatttgagcagcctccaaagtttgacagtgatggtaatttgattgat 720 Query: 597 gctgagatcagagagcggatcaagaaagtgctcttgtccctccaggccttcacactcagg 656 || | |||||||| ||||||||| |||| ||||| ||||| ||||| |||||||||||| Sbjct: 721 gcgcaaatcagagaacggatcaagcaagttctcttatcccttcaggctttcacactcagg 780 Query: 657 atccagaataaggattgaa 675 |||| || || ||||||| Sbjct: 781 ctccaaaagaaagattgaa 799 Score = 117 bits (59), Expect = 7e-23 Identities = 86/95 (90%) Strand = Plus / Plus Query: 80 catggaggtcgccgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 139 |||||||| ||| ||||||| ||||||| ||||||| |||||| |||||||||||||||| Sbjct: 83 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 142 Query: 140 cagggcgtcctacaaccgcggcctcctccgcgccg 174 || ||| ||||||||| |||||||||||||||||| Sbjct: 143 caaggcctcctacaacggcggcctcctccgcgccg 177
>gb|DQ244200.1| Zea mays clone 3144 mRNA sequence Length = 895 Score = 371 bits (187), Expect = 3e-99 Identities = 331/379 (87%) Strand = Plus / Plus Query: 278 cttcccgcccgccgtcgaggccttccgcgaccgcatccgcgccgccgactgcttcctctt 337 ||||||||||||||||||||||||||||| | || || ||||||||||||||||| Sbjct: 294 cttcccgcccgccgtcgaggccttccgcgccaaggtctgccaggccgactgcttcctctt 353 Query: 338 cggctcgccagagtacaactactccatcgcaacccctctgaagaatgcacttgactgggc 397 |||| |||| |||||||||||||||||||| ||||| |||||||| || ||||||||||| Sbjct: 354 cggcgcgcccgagtacaactactccatcgccacccccctgaagaacgcgcttgactgggc 413 Query: 398 ttctaggggaaacaattgctgggcagacaaacctgctgccattgtcagcgcaggaggtgg 457 ||||| ||||| || || |||||||||||| ||||||| || || || ||||| || || Sbjct: 414 ctctagaggaaagaactgttgggcagacaaagctgctgcgatcgtgagtgcaggcggcgg 473 Query: 458 ctttggaggaggtagatcgcagtaccatctccggcaagtcggggtgttcttagatcttca 517 |||||||||||| || ||||||||||||||||| || |||||||| ||| | ||||| || Sbjct: 474 ctttggaggagggaggtcgcagtaccatctccgtcaggtcggggttttcctggatctcca 533 Query: 518 tttcatcaacaagccagagctgttcgtccaagcatttcagcagccacccaagttcgacag 577 |||||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||| Sbjct: 534 tttcatcaacaagccagaactgtgcgtccaagcgtttcagcagccacccaagtttgacag 593 Query: 578 cgatggaaatctgattgacgctgagatcagagagcggatcaagaaagtgctcttgtccct 637 ||||||||||||| | || ||||| |||||||||||| |||||||||||||| | ||||| Sbjct: 594 cgatggaaatctggtcgatgctgaaatcagagagcggctcaagaaagtgctcctatccct 653 Query: 638 ccaggccttcacactcagg 656 ||||||||||| |||||| Sbjct: 654 tcaggccttcacgctcagg 672 Score = 135 bits (68), Expect = 3e-28 Identities = 92/100 (92%) Strand = Plus / Plus Query: 94 cggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccgcagggcgtcctaca 153 |||||| ||||||||| |||||||| ||| |||||||||||||||||| ||| |||| || Sbjct: 101 cggcgaggcccgtcctgcgcgtggctgccatctgcggctccctccgcaaggcctccttca 160 Query: 154 accgcggcctcctccgcgccgcggcggaggtgtgcgagga 193 |||||||||||||||||||||| ||||||||||||||||| Sbjct: 161 accgcggcctcctccgcgccgccgcggaggtgtgcgagga 200
>gb|AY106272.1| Zea mays PCO085431 mRNA sequence Length = 1019 Score = 371 bits (187), Expect = 3e-99 Identities = 331/379 (87%) Strand = Plus / Plus Query: 278 cttcccgcccgccgtcgaggccttccgcgaccgcatccgcgccgccgactgcttcctctt 337 ||||||||||||||||||||||||||||| | || || ||||||||||||||||| Sbjct: 363 cttcccgcccgccgtcgaggccttccgcgccaaggtctgccaggccgactgcttcctctt 422 Query: 338 cggctcgccagagtacaactactccatcgcaacccctctgaagaatgcacttgactgggc 397 |||| |||| |||||||||||||||||||| ||||| |||||||| || ||||||||||| Sbjct: 423 cggcgcgcccgagtacaactactccatcgccacccccctgaagaacgcgcttgactgggc 482 Query: 398 ttctaggggaaacaattgctgggcagacaaacctgctgccattgtcagcgcaggaggtgg 457 ||||| ||||| || || |||||||||||||||||||| || || || ||||| || || Sbjct: 483 ctctagaggaaagaactgttgggcagacaaacctgctgcgatcgtgagtgcaggcggcgg 542 Query: 458 ctttggaggaggtagatcgcagtaccatctccggcaagtcggggtgttcttagatcttca 517 |||||||||||| || ||||||||||||||||| || |||||||| ||| | ||||| || Sbjct: 543 ctttggaggagggaggtcgcagtaccatctccgtcaggtcggggttttcctggatctcca 602 Query: 518 tttcatcaacaagccagagctgttcgtccaagcatttcagcagccacccaagttcgacag 577 |||||||||||||||||| |||| ||||||||| || ||||||||||||||||| ||||| Sbjct: 603 tttcatcaacaagccagaactgtgcgtccaagccttccagcagccacccaagtttgacag 662 Query: 578 cgatggaaatctgattgacgctgagatcagagagcggatcaagaaagtgctcttgtccct 637 ||||||||||||| | || ||||| |||||||||||| |||||||||||||| | ||||| Sbjct: 663 cgatggaaatctggtcgatgctgaaatcagagagcggctcaagaaagtgctcctatccct 722 Query: 638 ccaggccttcacactcagg 656 ||||||||||| |||||| Sbjct: 723 tcaggccttcacgctcagg 741 Score = 135 bits (68), Expect = 3e-28 Identities = 92/100 (92%) Strand = Plus / Plus Query: 94 cggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccgcagggcgtcctaca 153 |||||| ||||||||| |||||||| ||| |||||||||||||||||| ||| |||| || Sbjct: 170 cggcgaggcccgtcctgcgcgtggctgccatctgcggctccctccgcaaggcctccttca 229 Query: 154 accgcggcctcctccgcgccgcggcggaggtgtgcgagga 193 |||||||||||||||||||||| ||||||||||||||||| Sbjct: 230 accgcggcctcctccgcgccgccgcggaggtgtgcgagga 269
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 266 bits (134), Expect = 1e-67 Identities = 263/306 (85%) Strand = Plus / Minus Query: 370 cccctctgaagaatgcacttgactgggcttctaggggaaacaattgctgggcagacaaac 429 |||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||||| Sbjct: 41999825 ccccactgaagaatgcacttgattgggcttctagagggcaaaattgctgggcagacaaac 41999766 Query: 430 ctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcgcagtaccatctcc 489 ||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 41999765 ctgctgcaattgtcagtgcaggaggtggctttggagggggtagatcacagtaccatcttc 41999706 Query: 490 ggcaagtcggggtgttcttagatcttcatttcatcaacaagccagagctgttcgtccaag 549 | || |||||||| || ||||||||||| ||||||||||||||||| || ||| ||| Sbjct: 41999705 gtcaggtcggggtatttttagatcttcacttcatcaacaagccagaactagccgtaaaag 41999646 Query: 550 catttcagcagccacccaagttcgacagcgatggaaatctgattgacgctgagatcagag 609 ||||| ||||||| || ||||| ||||| ||||| ||| ||||||| || | ||||||| Sbjct: 41999645 catttgagcagcctccaaagtttgacagtgatggtaatttgattgatgcgcaaatcagag 41999586 Query: 610 agcggatcaagaaagtgctcttgtccctccaggccttcacactcaggatccagaataagg 669 | ||||||||| |||| ||||| ||||| ||||| |||||||||||| |||| || || | Sbjct: 41999585 aacggatcaagcaagttctcttatcccttcaggctttcacactcaggctccaaaagaaag 41999526 Query: 670 attgaa 675 |||||| Sbjct: 41999525 attgaa 41999520 Score = 168 bits (85), Expect = 2e-38 Identities = 166/193 (86%) Strand = Plus / Minus Query: 177 gcggaggtgtgcgaggagtcggttccggggatgcgcgtggagcacgtggacatctccgcg 236 |||| ||||||||||||||| | ||||| ||||||| || ||||| |||||||||| Sbjct: 42001796 gcgggggtgtgcgaggagtccatcccgggcctgcgcgtcgaccacgtcgacatctccggc 42001737 Query: 237 ctgccgctgctcaacaccgacctcgagacgcccgacgggggcttcccgcccgccgtcgag 296 ||||||||||||||||||||||||||||| |||| || || ||||| |||||||||||| Sbjct: 42001736 ctgccgctgctcaacaccgacctcgagaccgccgatggcggattccctcccgccgtcgag 42001677 Query: 297 gccttccgcgaccgcatccgcgccgccgactgcttcctcttcggctcgccagagtacaac 356 |||||||||||| ||||| |||||||||||||||||||| || || ||||||||| Sbjct: 42001676 gccttccgcgacaaggtccgccaggccgactgcttcctcttcggatcccccgagtacaac 42001617 Query: 357 tactccatcgcaa 369 ||||||||||||| Sbjct: 42001616 tactccatcgcaa 42001604 Score = 117 bits (59), Expect = 7e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 80 catggaggtcgccgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 139 |||||||| ||| ||||||| ||||||| ||||||| |||||| |||||||||||||||| Sbjct: 42002014 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 42001955 Query: 140 cagggcgtcctacaaccgcggcctcctccgcgccg 174 || ||| ||||||||| |||||||||||||||||| Sbjct: 42001954 caaggcctcctacaacggcggcctcctccgcgccg 42001920 Score = 91.7 bits (46), Expect = 4e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 276 ggcttcccgcccgccgtcgaggccttccgcgaccgcatccgcgccgccgactgcttcctc 335 ||||||||||| ||||||||||| ||||| | | | ||||||| ||||||||||||||| Sbjct: 42010758 ggcttcccgccggccgtcgaggcgttccgggccagtgtccgcgctgccgactgcttcctc 42010817 Query: 336 ttcggctcgccagagtacaactactccatc 365 |||| ||| || |||||||||||||||||| Sbjct: 42010818 ttcgcctctcccgagtacaactactccatc 42010847 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 490 ggcaagtcggggtgttcttagatcttcatttcatcaacaagcc 532 ||||||||||||| ||||| || | ||||||||||||||||| Sbjct: 42011473 ggcaagtcggggttttcttggacatccatttcatcaacaagcc 42011515
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 266 bits (134), Expect = 1e-67 Identities = 263/306 (85%) Strand = Plus / Minus Query: 370 cccctctgaagaatgcacttgactgggcttctaggggaaacaattgctgggcagacaaac 429 |||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||||| Sbjct: 101902 ccccactgaagaatgcacttgattgggcttctagagggcaaaattgctgggcagacaaac 101843 Query: 430 ctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcgcagtaccatctcc 489 ||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| | Sbjct: 101842 ctgctgcaattgtcagtgcaggaggtggctttggagggggtagatcacagtaccatcttc 101783 Query: 490 ggcaagtcggggtgttcttagatcttcatttcatcaacaagccagagctgttcgtccaag 549 | || |||||||| || ||||||||||| ||||||||||||||||| || ||| ||| Sbjct: 101782 gtcaggtcggggtatttttagatcttcacttcatcaacaagccagaactagccgtaaaag 101723 Query: 550 catttcagcagccacccaagttcgacagcgatggaaatctgattgacgctgagatcagag 609 ||||| ||||||| || ||||| ||||| ||||| ||| ||||||| || | ||||||| Sbjct: 101722 catttgagcagcctccaaagtttgacagtgatggtaatttgattgatgcgcaaatcagag 101663 Query: 610 agcggatcaagaaagtgctcttgtccctccaggccttcacactcaggatccagaataagg 669 | ||||||||| |||| ||||| ||||| ||||| |||||||||||| |||| || || | Sbjct: 101662 aacggatcaagcaagttctcttatcccttcaggctttcacactcaggctccaaaagaaag 101603 Query: 670 attgaa 675 |||||| Sbjct: 101602 attgaa 101597 Score = 168 bits (85), Expect = 2e-38 Identities = 166/193 (86%) Strand = Plus / Minus Query: 177 gcggaggtgtgcgaggagtcggttccggggatgcgcgtggagcacgtggacatctccgcg 236 |||| ||||||||||||||| | ||||| ||||||| || ||||| |||||||||| Sbjct: 103873 gcgggggtgtgcgaggagtccatcccgggcctgcgcgtcgaccacgtcgacatctccggc 103814 Query: 237 ctgccgctgctcaacaccgacctcgagacgcccgacgggggcttcccgcccgccgtcgag 296 ||||||||||||||||||||||||||||| |||| || || ||||| |||||||||||| Sbjct: 103813 ctgccgctgctcaacaccgacctcgagaccgccgatggcggattccctcccgccgtcgag 103754 Query: 297 gccttccgcgaccgcatccgcgccgccgactgcttcctcttcggctcgccagagtacaac 356 |||||||||||| ||||| |||||||||||||||||||| || || ||||||||| Sbjct: 103753 gccttccgcgacaaggtccgccaggccgactgcttcctcttcggatcccccgagtacaac 103694 Query: 357 tactccatcgcaa 369 ||||||||||||| Sbjct: 103693 tactccatcgcaa 103681 Score = 117 bits (59), Expect = 7e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 80 catggaggtcgccgcggcgaagcccgtcctccgcgtggccgccgtctgcggctccctccg 139 |||||||| ||| ||||||| ||||||| ||||||| |||||| |||||||||||||||| Sbjct: 104091 catggaggccgcggcggcgaggcccgtcatccgcgtcgccgccatctgcggctccctccg 104032 Query: 140 cagggcgtcctacaaccgcggcctcctccgcgccg 174 || ||| ||||||||| |||||||||||||||||| Sbjct: 104031 caaggcctcctacaacggcggcctcctccgcgccg 103997 Score = 91.7 bits (46), Expect = 4e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 276 ggcttcccgcccgccgtcgaggccttccgcgaccgcatccgcgccgccgactgcttcctc 335 ||||||||||| ||||||||||| ||||| | | | ||||||| ||||||||||||||| Sbjct: 112835 ggcttcccgccggccgtcgaggcgttccgggccagtgtccgcgctgccgactgcttcctc 112894 Query: 336 ttcggctcgccagagtacaactactccatc 365 |||| ||| || |||||||||||||||||| Sbjct: 112895 ttcgcctctcccgagtacaactactccatc 112924 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 490 ggcaagtcggggtgttcttagatcttcatttcatcaacaagcc 532 ||||||||||||| ||||| || | ||||||||||||||||| Sbjct: 113550 ggcaagtcggggttttcttggacatccatttcatcaacaagcc 113592
>emb|CT829955.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034F17, full insert sequence Length = 812 Score = 101 bits (51), Expect = 4e-18 Identities = 182/225 (80%), Gaps = 3/225 (1%) Strand = Plus / Plus Query: 158 cggcctcctccgcgccgcggcggaggtgtgcgaggagtcggttccggggatgcgcgtgga 217 ||||||| |||||||||| |||| | ||||||||||| | ||||||||| | || Sbjct: 105 cggcctcatccgcgccgccaaggagatatgcgaggagtccatcccggggatggttattga 164 Query: 218 gcacgtggacatctccgcgctgccgctgctcaacaccgacctcgagacgcccgacggggg 277 ||||| |||||| ||| ||||||||||||||||||||| | ||| ||||| || Sbjct: 165 ccacgtcgacatccccgacctgccgctgctcaacaccgacatggaggtt---gacggcgg 221 Query: 278 cttcccgcccgccgtcgaggccttccgcgaccgcatccgcgccgccgactgcttcctctt 337 ||||||||| ||||||||||| ||||| | | | ||||||| ||||||||||||||||| Sbjct: 222 cttcccgccggccgtcgaggcgttccgggccagtgtccgcgctgccgactgcttcctctt 281 Query: 338 cggctcgccagagtacaactactccatcgcaacccctctgaagaa 382 || ||| || |||||||||||||||||| || ||||||||||| Sbjct: 282 cgcctctcccgagtacaactactccatctcaggtcctctgaagaa 326 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 490 ggcaagtcggggtgttcttagatcttcatttcatcaacaagcc 532 ||||||||||||| ||||| || | ||||||||||||||||| Sbjct: 434 ggcaagtcggggttttcttggacatccatttcatcaacaagcc 476
>ref|NM_001051965.1| Oryza sativa (japonica cultivar-group) Os01g0954000 (Os01g0954000) mRNA, complete cds Length = 765 Score = 93.7 bits (47), Expect = 1e-15 Identities = 92/107 (85%) Strand = Plus / Plus Query: 276 ggcttcccgcccgccgtcgaggccttccgcgaccgcatccgcgccgccgactgcttcctc 335 ||||||||||| ||||||||||| ||||| | | | ||||||| ||||||||||||||| Sbjct: 221 ggcttcccgccggccgtcgaggcgttccgggccagtgtccgcgctgccgactgcttcctc 280 Query: 336 ttcggctcgccagagtacaactactccatcgcaacccctctgaagaa 382 |||| ||| || |||||||||||||||||| || ||||||||||| Sbjct: 281 ttcgcctctcccgagtacaactactccatctcaggtcctctgaagaa 327 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 490 ggcaagtcggggtgttcttagatcttcatttcatcaacaagcc 532 ||||||||||||| ||||| || | ||||||||||||||||| Sbjct: 435 ggcaagtcggggttttcttggacatccatttcatcaacaagcc 477
>dbj|AK062729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E03, full insert sequence Length = 764 Score = 93.7 bits (47), Expect = 1e-15 Identities = 92/107 (85%) Strand = Plus / Plus Query: 276 ggcttcccgcccgccgtcgaggccttccgcgaccgcatccgcgccgccgactgcttcctc 335 ||||||||||| ||||||||||| ||||| | | | ||||||| ||||||||||||||| Sbjct: 221 ggcttcccgccggccgtcgaggcgttccgggccagtgtccgcgctgccgactgcttcctc 280 Query: 336 ttcggctcgccagagtacaactactccatcgcaacccctctgaagaa 382 |||| ||| || |||||||||||||||||| || ||||||||||| Sbjct: 281 ttcgcctctcccgagtacaactactccatctcaggtcctctgaagaa 327 Score = 46.1 bits (23), Expect = 0.21 Identities = 38/43 (88%) Strand = Plus / Plus Query: 490 ggcaagtcggggtgttcttagatcttcatttcatcaacaagcc 532 ||||||||||||| ||||| || | ||||||||||||||||| Sbjct: 435 ggcaagtcggggttttcttggacatccatttcatcaacaagcc 477
>ref|NM_113705.2| Arabidopsis thaliana NQR (NADPH:QUINONE OXIDOREDUCTASE); FMN reductase (NQR) mRNA, complete cds Length = 773 Score = 73.8 bits (37), Expect = 9e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 417 tgggcagacaaacctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcg 476 ||||| |||||||| ||||| ||| | ||| | || || || ||||| ||||| |||||| Sbjct: 368 tgggcggacaaaccagctgctattataagcaccggtggaggttttggtggaggaagatcg 427 Query: 477 cagtaccatctccggcaagtcggggtgttcttagatcttcatttcatcaacaa 529 ||||||||||| || ||| |||| || ||| | |||||||||||||||||||| Sbjct: 428 cagtaccatcttcgacaaatcggagtcttccttgatcttcatttcatcaacaa 480
>gb|BT024581.1| Arabidopsis thaliana At3g27890 mRNA, complete cds Length = 591 Score = 73.8 bits (37), Expect = 9e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 417 tgggcagacaaacctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcg 476 ||||| |||||||| ||||| ||| | ||| | || || || ||||| ||||| |||||| Sbjct: 337 tgggcggacaaaccagctgctattataagcaccggtggaggttttggtggaggaagatcg 396 Query: 477 cagtaccatctccggcaagtcggggtgttcttagatcttcatttcatcaacaa 529 ||||||||||| || ||| |||| || ||| | |||||||||||||||||||| Sbjct: 397 cagtaccatcttcgacaaatcggagtcttccttgatcttcatttcatcaacaa 449
>dbj|AP000371.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K16N12 Length = 58864 Score = 73.8 bits (37), Expect = 9e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 417 tgggcagacaaacctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcg 476 ||||| |||||||| ||||| ||| | ||| | || || || ||||| ||||| |||||| Sbjct: 41220 tgggcggacaaaccagctgctattataagcaccggtggaggttttggtggaggaagatcg 41161 Query: 477 cagtaccatctccggcaagtcggggtgttcttagatcttcatttcatcaacaa 529 ||||||||||| || ||| |||| || ||| | |||||||||||||||||||| Sbjct: 41160 cagtaccatcttcgacaaatcggagtcttccttgatcttcatttcatcaacaa 41108
>emb|BX826086.1|CNS0A6DG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL83ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 714 Score = 73.8 bits (37), Expect = 9e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 417 tgggcagacaaacctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcg 476 ||||| |||||||| ||||| ||| | ||| | || || || ||||| ||||| |||||| Sbjct: 331 tgggcggacaaaccagctgctattataagcaccggtggaggttttggtggaggaagatcg 390 Query: 477 cagtaccatctccggcaagtcggggtgttcttagatcttcatttcatcaacaa 529 ||||||||||| || ||| |||| || ||| | |||||||||||||||||||| Sbjct: 391 cagtaccatcttcgacaaatcggagtcttccttgatcttcatttcatcaacaa 443
>gb|AF145234.1|AF145234 Arabidopsis thaliana NADPH:quinone oxidoreductase (NQR) mRNA, complete cds Length = 782 Score = 73.8 bits (37), Expect = 9e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 417 tgggcagacaaacctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcg 476 ||||| |||||||| ||||| ||| | ||| | || || || ||||| ||||| |||||| Sbjct: 375 tgggcggacaaaccagctgctattataagcaccggtggaggttttggtggaggaagatcg 434 Query: 477 cagtaccatctccggcaagtcggggtgttcttagatcttcatttcatcaacaa 529 ||||||||||| || ||| |||| || ||| | |||||||||||||||||||| Sbjct: 435 cagtaccatcttcgacaaatcggagtcttccttgatcttcatttcatcaacaa 487
>gb|AC189633.1| Brassica rapa subsp. pekinensis clone KBrS004A14, complete sequence Length = 132591 Score = 65.9 bits (33), Expect = 2e-07 Identities = 93/113 (82%) Strand = Plus / Minus Query: 417 tgggcagacaaacctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcg 476 ||||| ||||||||||||||||| | ||| | || || || ||||| ||||| || ||| Sbjct: 66948 tgggctgacaaacctgctgccatcataagcaccggtggaggttttggtggaggaaggtcg 66889 Query: 477 cagtaccatctccggcaagtcggggtgttcttagatcttcatttcatcaacaa 529 ||||||||||| || || | || |||||| | |||||||||||||||||||| Sbjct: 66888 cagtaccatcttcgacagattggagtgttccttgatcttcatttcatcaacaa 66836
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 100 agcccgtcctccgcgtggccgccg 123 |||||||||||||||||||||||| Sbjct: 3492269 agcccgtcctccgcgtggccgccg 3492292
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 100 agcccgtcctccgcgtggccgccg 123 |||||||||||||||||||||||| Sbjct: 125688 agcccgtcctccgcgtggccgccg 125711
>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0672D01 Length = 146954 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 100 agcccgtcctccgcgtggccgccg 123 |||||||||||||||||||||||| Sbjct: 47986 agcccgtcctccgcgtggccgccg 48009
>gb|AC163894.2| Glomus intraradices clone JGIATSX-9F17, complete sequence Length = 37905 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 302 ccgcgaccgcatccgcgccgccg 324 ||||||||||||||||||||||| Sbjct: 17637 ccgcgaccgcatccgcgccgccg 17615
>ref|XM_511990.2| PREDICTED: Pan troglodytes PITPNM family member 3 (PITPNM3), mRNA Length = 3633 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 322 ccgactgcttcctcttcggctcgcca 347 |||||| ||||||||||||||||||| Sbjct: 1892 ccgacttcttcctcttcggctcgcca 1917
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 ggcctcctccgcgccgcggcgg 180 |||||||||||||||||||||| Sbjct: 6297659 ggcctcctccgcgccgcggcgg 6297680
>gb|AC130808.36| Medicago truncatula clone mth2-34k9, complete sequence Length = 113091 Score = 44.1 bits (22), Expect = 0.82 Identities = 79/98 (80%) Strand = Plus / Plus Query: 429 cctgctgccattgtcagcgcaggaggtggctttggaggaggtagatcgcagtaccatctc 488 |||||||||||||| || | ||||| | |||||| ||||| | | | ||| | |||||| Sbjct: 5911 cctgctgccattgtgagtgttggaggagcctttggtggaggaaaagcacagcatcatctc 5970 Query: 489 cggcaagtcggggtgttcttagatcttcatttcatcaa 526 || ||| ||||||| ||| | ||| ||||||||||||| Sbjct: 5971 cgccaaatcggggttttccttgatattcatttcatcaa 6008
>gb|AC055872.23| Homo sapiens chromosome 17, clone RP11-636N17, complete sequence Length = 202360 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Minus Query: 322 ccgactgcttcctcttcggctcgcca 347 |||||| ||||||||||||||||||| Sbjct: 119314 ccgacttcttcctcttcggctcgcca 119289
>gb|AF326935.2|AF326935 Leishmania donovani isoleucine tRNA synthetase (IleRS) gene, complete cds Length = 3690 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Plus Query: 290 cgtcgaggccttccgcgaccgc 311 |||||||||||||||||||||| Sbjct: 1646 cgtcgaggccttccgcgaccgc 1667
>emb|AL671545.13| Human DNA sequence from clone CITF22-53E7 on chromosome 22, complete sequence Length = 27547 Score = 44.1 bits (22), Expect = 0.82 Identities = 22/22 (100%) Strand = Plus / Minus Query: 633 tccctccaggccttcacactca 654 |||||||||||||||||||||| Sbjct: 6827 tccctccaggccttcacactca 6806 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 tccctccaggccttcacactc 653 ||||||||||||||||||||| Sbjct: 7080 tccctccaggccttcacactc 7060
>dbj|AB209130.1| Homo sapiens mRNA for Hypothetical protein protein Length = 5377 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 322 ccgactgcttcctcttcggctcgcca 347 |||||| ||||||||||||||||||| Sbjct: 3698 ccgacttcttcctcttcggctcgcca 3723
>emb|AL009174.1|HS417G15 Human DNA sequence from clone RP3-417G15 on chromosome Xq25-26 Contains a ribosomal protein S24 (RPS24) pseudogene, part of the GPC3 gene for glypican 3 and a laminin receptor 1 (ribosomal protein SA, 67kDa) (LAMR1) pseudogene, complete sequence Length = 124321 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Minus Query: 702 tattttttactttggttatttgtgct 727 |||||||| ||||||||||||||||| Sbjct: 55897 tattttttgctttggttatttgtgct 55872
>ref|NM_031220.1| Homo sapiens PITPNM family member 3 (PITPNM3), mRNA gb|AF334586.1|AF334586 Homo sapiens NIR1 mRNA, complete cds Length = 3109 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 322 ccgactgcttcctcttcggctcgcca 347 |||||| ||||||||||||||||||| Sbjct: 1332 ccgacttcttcctcttcggctcgcca 1357
>gb|BC035799.1| Homo sapiens PITPNM family member 3, mRNA (cDNA clone IMAGE:5735039), with apparent retained intron Length = 2810 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 322 ccgactgcttcctcttcggctcgcca 347 |||||| ||||||||||||||||||| Sbjct: 1130 ccgacttcttcctcttcggctcgcca 1155
>emb|AL389994.1|IR2004661 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2004661 Length = 2738 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 322 ccgactgcttcctcttcggctcgcca 347 |||||| ||||||||||||||||||| Sbjct: 1058 ccgacttcttcctcttcggctcgcca 1083
>gb|CP000481.1| Acidothermus cellulolyticus 11B, complete genome Length = 2443540 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 302 ccgcgaccgcatccgcgccgccgac 326 ||||||||||| ||||||||||||| Sbjct: 157023 ccgcgaccgcagccgcgccgccgac 156999
>ref|NM_001071238.1| Oryza sativa (japonica cultivar-group) Os10g0443200 (Os10g0443200) mRNA, partial cds Length = 1082 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tccgcgaccgcatccgcgccg 321 ||||||||||||||||||||| Sbjct: 272 tccgcgaccgcatccgcgccg 292
>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence Length = 2646969 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 293 cgaggccttccgcgaccgcatccgcgccg 321 |||| |||||||||| ||||||||||||| Sbjct: 2630754 cgagcccttccgcgatcgcatccgcgccg 2630726
>gb|AC073391.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0015F09b, complete sequence Length = 108964 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tccgcgaccgcatccgcgccg 321 ||||||||||||||||||||| Sbjct: 15718 tccgcgaccgcatccgcgccg 15738
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tccgcgaccgcatccgcgccg 321 ||||||||||||||||||||| Sbjct: 15432372 tccgcgaccgcatccgcgccg 15432392
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 gcgccgcggcggaggtgtgcg 189 ||||||||||||||||||||| Sbjct: 437759 gcgccgcggcggaggtgtgcg 437739
>dbj|AK063397.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H10, full insert sequence Length = 1082 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 tccgcgaccgcatccgcgccg 321 ||||||||||||||||||||| Sbjct: 272 tccgcgaccgcatccgcgccg 292 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 143,288,217 Number of extensions: 7609728 Number of successful extensions: 169154 Number of sequences better than 10.0: 39 Number of HSP's gapped: 169138 Number of HSP's successfully gapped: 67 Length of query: 861 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 839 Effective length of database: 18,508,616,841 Effective search space: 15528729529599 Effective search space used: 15528729529599 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
