ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf179p24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB085212.1| Triticum aestivum Tria27 mRNA for 27K protein, partial cds Length = 798 Score = 922 bits (465), Expect = 0.0 Identities = 682/751 (90%), Gaps = 10/751 (1%) Strand = Plus / Plus Query: 179 ggcagcgagaaggtgcacgtggcgatctactacgagtcgctgtgccccttctcgatccgc 238 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| Sbjct: 22 ggcagcgagaaggtgcacgtggcaatctactacgagtcgctgtgcccctactcggtccgc 81 Query: 239 ttcgtggcgaaccacctcgtcaaggcctacagggacggcctactcgacgccgccgacctc 298 |||||||||||||||||| |||||||||||||||||||||| |||||||||||| | ||| Sbjct: 82 ttcgtggcgaaccacctcttcaaggcctacagggacggcctgctcgacgccgccaatctc 141 Query: 299 accctcgtaccctatggcaacgccgtggtcggcagcgacggcaccatctcctgtcagcat 358 |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 142 accctcgtcccctatggcaacgccgtggtccgcaatgacggcaccatctcctgtcagcat 201 Query: 359 ggccccgaggaatgccttctgaacaccgtggaggcatgcgccatcgaagcatggccggat 418 |||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| Sbjct: 202 ggccccgaggaatgccttctcaacaccgtggaggcttgcgccatcgacgcctggccggac 261 Query: 419 gtgaaagtgcatctcggtttcatttactgcgtgtcggacctggtgatgaagaacaagcac 478 ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 262 gtgaaggtgcatctcggcttcatttactgcgtgtcggacctggtgttgaagaacaagcac 321 Query: 479 cgggagtgggagtcgtgcttccagaaacaggggcttgatcccaaggcagtcacggagtgc 538 |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| Sbjct: 322 cgggagtgggagtcgtgcttccagaaacaggggcttgacccaaagccagtcacggagtgc 381 Query: 539 tacaagggcgagcgtggccacaatctttcgctcgagtacgggagacagacacatgagctc 598 |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| Sbjct: 382 tacaagggcgagcgtggccacaatctatcgctcgagtatgggagacagacagctgagctc 441 Query: 599 gtgccgcctcaccagttcgttccgtgggtggttatcgacggcaagccgctcctcgacaat 658 ||||| ||||||||||||||||| |||||||| ||||||||||||||||| | || || Sbjct: 442 gtgcctcctcaccagttcgttccatgggtggtggtcgacggcaagccgctctacaacgat 501 Query: 659 taccggaacttcgaagcttacatctgcaaggcgtccaagggatatcccctca---aggcg 715 ||| |||||||| ||||||||||||||||||||| |||||| ||||||||| ||||| Sbjct: 502 tacgggaacttcaaagcttacatctgcaaggcgtacaagggctatcccctcctcgaggcg 561 Query: 716 tgtcaagacctgggcctcgaggcagacaacgatgtctacggccgactttgatcgtgctga 775 |||| | ||||||||| |||||| || ||||||| |||||||||||||||||||| ||| Sbjct: 562 tgtcgaagcctgggcctggaggcacacgacgatgtgtacggccgactttgatcgtgatga 621 Query: 776 tgatgatgccatcggcaagaatcggatggtcttgccggatggtgataataat---tgatg 832 |||||||||||||| ||||| | |||||||| |||||||||||||||||||| |||| Sbjct: 622 tgatgatgccatcgccaagattaggatggtcctgccggatggtgataataatgattgata 681 Query: 833 gatt-atgtttccttttggggatcatacatctgaacacagggcagttcaatctctctgtt 891 ||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||| Sbjct: 682 aatttatgtttcctctcggggatcatacatctgaacatagggcagttcaatctctctg-- 739 Query: 892 attaaggttaataaattgagtggttctgctc 922 ||||||||||||||| ||||||| ||||| Sbjct: 740 -ttaaggttaataaatcaagtggttgtgctc 769
>dbj|AK106050.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F01, full insert sequence Length = 942 Score = 196 bits (99), Expect = 1e-46 Identities = 410/513 (79%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 187 gaaggtgcacgtggcgatctactacgagtcgctgtgccccttctcgatccgcttcgtggc 246 ||||||| |||||||| |||||||||||||||||||||||| |||| ||||||| Sbjct: 138 gaaggtggacgtggcgctctactacgagtcgctgtgcccctactcggcgatgttcgtggt 197 Query: 247 gaaccacctcgtcaaggcctacagggacggcctactcgacgccgccgacctcaccctcgt 306 | | ||||| ||||| || |||||| ||||| |||||||||| ||||||| ||||||| Sbjct: 198 gggcagcctcgccaaggtcttcagggatggcctcctcgacgccgtcgacctctccctcgt 257 Query: 307 accctatggcaacgccgtggtcggcagcgacggcaccatctcctgtcagcatggccccga 366 ||||| ||||||||| ||| | ||||||| |||||||| |||||||| ||| Sbjct: 258 cccctacggcaacgcccgtgtc---aaggacggcaaaatctcctgccagcatggaagcga 314 Query: 367 ggaatgccttctgaacaccgtggaggcatgcgccatcgaagcatggccggatgtgaaagt 426 ||| ||| | ||||||||||||||||| ||||||||||| |||||||||||| ||| ||| Sbjct: 315 ggagtgcttcctgaacaccgtggaggcttgcgccatcgatgcatggccggatttgagagt 374 Query: 427 gcatctcggtttcatttactgcgtgtcggacctggtgatgaagaacaagcaccgggagtg 486 |||| || ||||||| ||||||||| |||||||||| |||| ||||||| |||||||| Sbjct: 375 gcatttccgtttcatctactgcgtggaggacctggtggtgaaccacaagcaacgggagtg 434 Query: 487 ggagtcgtgcttccagaaacaggggcttgatcccaaggcagtcacggagtgctacaaggg 546 ||| || |||||| ||| | || ||||||||| | ||||| || ||||||||||| Sbjct: 435 ggaatcctgcttcgggaagctcaacctcgatcccaagcctgtcaccgactgctacaaggg 494 Query: 547 cgagcgtggccacaatctttcgctcgagtacgggagacagacacatgagctcgtgccgcc 606 ||| || |||||| | || |||||| |||| || |||||||| | | | ||| || Sbjct: 495 cgaacgcggccaccagctctcgctcaagtatggaagacagactgacgctttgcagcctcc 554 Query: 607 tcaccagttcgttccgtgggtggttatcgacggcaagccgctcctcgacaattaccggaa 666 ||| ||| |||||| |||||||| ||||||| |||||||| ||| ||||| ||| Sbjct: 555 ccacaagtacgttccctgggtggtcgtcgacggtcagccgctctacgaggattacgagaa 614 Query: 667 cttcgaagcttacatctgcaaggcgtccaaggg 699 |||||| ||||||||||||||||| | |||||| Sbjct: 615 cttcgaggcttacatctgcaaggcctacaaggg 647
>emb|CT831595.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA059P08, full insert sequence Length = 1000 Score = 188 bits (95), Expect = 3e-44 Identities = 409/513 (79%), Gaps = 3/513 (0%) Strand = Plus / Plus Query: 187 gaaggtgcacgtggcgatctactacgagtcgctgtgccccttctcgatccgcttcgtggc 246 ||||||| |||||||| |||||||||||||||||||||||| |||| ||||||| Sbjct: 171 gaaggtggacgtggcgctctactacgagtcgctgtgcccctactcggcgatgttcgtggt 230 Query: 247 gaaccacctcgtcaaggcctacagggacggcctactcgacgccgccgacctcaccctcgt 306 | | ||||| ||||| || |||||| ||||| |||||||||| ||||||| ||||||| Sbjct: 231 gggcagcctcgccaaggtcttcagggatggcctcctcgacgccgtcgacctctccctcgt 290 Query: 307 accctatggcaacgccgtggtcggcagcgacggcaccatctcctgtcagcatggccccga 366 ||||| ||||||||| ||| | ||||||| |||||||| |||||||| ||| Sbjct: 291 cccctacggcaacgcccgtgtc---aaggacggcaaaatctcctgccagcatggaagcga 347 Query: 367 ggaatgccttctgaacaccgtggaggcatgcgccatcgaagcatggccggatgtgaaagt 426 ||| ||| | ||||||||||||||||| ||||||||||| |||||||||||| ||| ||| Sbjct: 348 ggagtgcttcctgaacaccgtggaggcttgcgccatcgatgcatggccggatttgagagt 407 Query: 427 gcatctcggtttcatttactgcgtgtcggacctggtgatgaagaacaagcaccgggagtg 486 |||| || | ||||| ||||||||| |||||||||| |||| ||||||| |||||||| Sbjct: 408 gcatttccgcttcatctactgcgtggaggacctggtggtgaaccacaagcaacgggagtg 467 Query: 487 ggagtcgtgcttccagaaacaggggcttgatcccaaggcagtcacggagtgctacaaggg 546 ||| || |||||| ||| | || ||||||||| | ||||| || ||||||||||| Sbjct: 468 ggaatcctgcttcgggaagctcaacctcgatcccaagcctgtcaccgactgctacaaggg 527 Query: 547 cgagcgtggccacaatctttcgctcgagtacgggagacagacacatgagctcgtgccgcc 606 ||| || |||||| | || |||||| |||| || |||||||| | | | ||| || Sbjct: 528 cgaacgcggccaccagctctcgctcaagtatggaagacagactgacgctttgcagcctcc 587 Query: 607 tcaccagttcgttccgtgggtggttatcgacggcaagccgctcctcgacaattaccggaa 666 ||| ||| |||||| |||||||| ||||||| |||||||| ||| ||||| ||| Sbjct: 588 ccacaagtacgttccctgggtggtcgtcgacggtcagccgctctacgaggattacgagaa 647 Query: 667 cttcgaagcttacatctgcaaggcgtccaaggg 699 |||||| ||||||||||||||||| | |||||| Sbjct: 648 cttcgaggcttacatctgcaaggcctacaaggg 680
>ref|NM_001056362.1| Oryza sativa (japonica cultivar-group) Os03g0295800 (Os03g0295800) mRNA, complete cds Length = 1074 Score = 151 bits (76), Expect = 5e-33 Identities = 289/360 (80%) Strand = Plus / Plus Query: 340 caccatctcctgtcagcatggccccgaggaatgccttctgaacaccgtggaggcatgcgc 399 ||||||||| || |||||||| |||||| ||| | ||||||||||||||||| ||||| Sbjct: 368 caccatctcttgccagcatggaagcgaggagtgcttcctgaacaccgtggaggcttgcgc 427 Query: 400 catcgaagcatggccggatgtgaaagtgcatctcggtttcatttactgcgtgtcggacct 459 |||||| |||||||||||| ||| ||||||| || ||||||| ||||||||| |||||| Sbjct: 428 catcgatgcatggccggatttgagagtgcatttccgtttcatctactgcgtggaggacct 487 Query: 460 ggtgatgaagaacaagcaccgggagtgggagtcgtgcttccagaaacaggggcttgatcc 519 |||| |||| ||||||| ||||||||||| || |||||| ||| | || ||||| Sbjct: 488 ggtggtgaaccacaagcaacgggagtgggaatcctgcttcgggaagctcaacctcgatcc 547 Query: 520 caaggcagtcacggagtgctacaagggcgagcgtggccacaatctttcgctcgagtacgg 579 |||| | ||||| || |||||||||||||| || |||||| | || |||||| |||| || Sbjct: 548 caagcctgtcaccgactgctacaagggcgaacgcggccaccagctctcgctcaagtatgg 607 Query: 580 gagacagacacatgagctcgtgccgcctcaccagttcgttccgtgggtggttatcgacgg 639 |||||||| | | | ||| || ||| ||| |||||| |||||||| ||||||| Sbjct: 608 aagacagactgacgctttgcagcctccccacaagtacgttccctgggtggtcgtcgacgg 667 Query: 640 caagccgctcctcgacaattaccggaacttcgaagcttacatctgcaaggcgtccaaggg 699 |||||||| ||| ||||| ||||||||| ||||||||||||||||| | |||||| Sbjct: 668 tcagccgctctacgaggattacgagaacttcgaggcttacatctgcaaggcctacaaggg 727
>dbj|AK071633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102J23, full insert sequence Length = 1076 Score = 151 bits (76), Expect = 5e-33 Identities = 289/360 (80%) Strand = Plus / Plus Query: 340 caccatctcctgtcagcatggccccgaggaatgccttctgaacaccgtggaggcatgcgc 399 ||||||||| || |||||||| |||||| ||| | ||||||||||||||||| ||||| Sbjct: 369 caccatctcttgccagcatggaagcgaggagtgcttcctgaacaccgtggaggcttgcgc 428 Query: 400 catcgaagcatggccggatgtgaaagtgcatctcggtttcatttactgcgtgtcggacct 459 |||||| |||||||||||| ||| ||||||| || ||||||| ||||||||| |||||| Sbjct: 429 catcgatgcatggccggatttgagagtgcatttccgtttcatctactgcgtggaggacct 488 Query: 460 ggtgatgaagaacaagcaccgggagtgggagtcgtgcttccagaaacaggggcttgatcc 519 |||| |||| ||||||| ||||||||||| || |||||| ||| | || ||||| Sbjct: 489 ggtggtgaaccacaagcaacgggagtgggaatcctgcttcgggaagctcaacctcgatcc 548 Query: 520 caaggcagtcacggagtgctacaagggcgagcgtggccacaatctttcgctcgagtacgg 579 |||| | ||||| || |||||||||||||| || |||||| | || |||||| |||| || Sbjct: 549 caagcctgtcaccgactgctacaagggcgaacgcggccaccagctctcgctcaagtatgg 608 Query: 580 gagacagacacatgagctcgtgccgcctcaccagttcgttccgtgggtggttatcgacgg 639 |||||||| | | | ||| || ||| ||| |||||| |||||||| ||||||| Sbjct: 609 aagacagactgacgctttgcagcctccccacaagtacgttccctgggtggtcgtcgacgg 668 Query: 640 caagccgctcctcgacaattaccggaacttcgaagcttacatctgcaaggcgtccaaggg 699 |||||||| ||| ||||| ||||||||| ||||||||||||||||| | |||||| Sbjct: 669 tcagccgctctacgaggattacgagaacttcgaggcttacatctgcaaggcctacaaggg 728
>emb|CT832278.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121J01, full insert sequence Length = 1033 Score = 149 bits (75), Expect = 2e-32 Identities = 335/421 (79%), Gaps = 3/421 (0%) Strand = Plus / Plus Query: 282 tcgacgccgccgacctcaccctcgtaccctatggcaacgcc---gtggtcggcagcgacg 338 ||||||||| ||||||| |||||| ||||| ||||||||| || |||||| | || Sbjct: 297 tcgacgccgtcgacctccgcctcgtcccctacggcaacgcccacgtcgtcggcgccaaca 356 Query: 339 gcaccatctcctgtcagcatggccccgaggaatgccttctgaacaccgtggaggcatgcg 398 ||||||||| || |||||||| |||||| ||| | ||||||||||||||||| |||| Sbjct: 357 acaccatctcttgccagcatggaagcgaggagtgcttcctgaacaccgtggaggcttgcg 416 Query: 399 ccatcgaagcatggccggatgtgaaagtgcatctcggtttcatttactgcgtgtcggacc 458 ||||||| |||||||||||| ||| ||||||| || | ||||| ||||||||| ||||| Sbjct: 417 ccatcgatgcatggccggatttgagagtgcatttccgcttcatctactgcgtggaggacc 476 Query: 459 tggtgatgaagaacaagcaccgggagtgggagtcgtgcttccagaaacaggggcttgatc 518 ||||| |||| ||||||| ||||||||||| || |||||| ||| | || |||| Sbjct: 477 tggtggtgaaccacaagcaacgggagtgggaatcctgcttcgggaagctcaacctcgatc 536 Query: 519 ccaaggcagtcacggagtgctacaagggcgagcgtggccacaatctttcgctcgagtacg 578 ||||| | ||||| || |||||||||||||| || |||||| | || |||||| |||| | Sbjct: 537 ccaagcctgtcaccgactgctacaagggcgaacgcggccaccagctctcgctcaagtatg 596 Query: 579 ggagacagacacatgagctcgtgccgcctcaccagttcgttccgtgggtggttatcgacg 638 | |||||||| | | | ||| || ||| ||| |||||| |||||||| |||||| Sbjct: 597 gaagacagactgacgctttgcagcctccccacaagtacgttccctgggtggtcgtcgacg 656 Query: 639 gcaagccgctcctcgacaattaccggaacttcgaagcttacatctgcaaggcgtccaagg 698 | |||||||| ||| ||||| ||||||||| ||||||||||||||||| | ||||| Sbjct: 657 gtcagccgctctacgaggattacgagaacttcgaggcttacatctgcaaggcctacaagg 716 Query: 699 g 699 | Sbjct: 717 g 717
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 87.7 bits (44), Expect = 7e-14 Identities = 113/136 (83%) Strand = Plus / Minus Query: 187 gaaggtgcacgtggcgatctactacgagtcgctgtgccccttctcgatccgcttcgtggc 246 ||||||| |||||||| |||||||||||||||||||||||| |||| ||||||| Sbjct: 42635 gaaggtggacgtggcgctctactacgagtcgctgtgcccctactcggcgatgttcgtggt 42576 Query: 247 gaaccacctcgtcaaggcctacagggacggcctactcgacgccgccgacctcaccctcgt 306 | | ||||| ||||| || |||||| ||||| |||||||||| ||||||| ||||||| Sbjct: 42575 gggcagcctcgccaaggtcttcagggatggcctcctcgacgccgtcgacctctccctcgt 42516 Query: 307 accctatggcaacgcc 322 ||||| ||||||||| Sbjct: 42515 cccctacggcaacgcc 42500 Score = 69.9 bits (35), Expect = 2e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 364 cgaggaatgccttctgaacaccgtggaggcatgcgccatcgaagcatggccggat 418 |||||| ||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 42250 cgaggagtgcttcctgaacaccgtggaggcttgcgccatcgatgcatggccggat 42196 Score = 63.9 bits (32), Expect = 1e-06 Identities = 65/76 (85%) Strand = Plus / Minus Query: 424 agtgcatctcggtttcatttactgcgtgtcggacctggtgatgaagaacaagcaccggga 483 ||||||| || ||||||| ||||||||| |||||||||| |||| ||||||| ||||| Sbjct: 42071 agtgcatttccgtttcatctactgcgtggaggacctggtggtgaaccacaagcaacggga 42012 Query: 484 gtgggagtcgtgcttc 499 |||||| || |||||| Sbjct: 42011 gtgggaatcctgcttc 41996 Score = 48.1 bits (24), Expect = 0.059 Identities = 33/36 (91%) Strand = Plus / Minus Query: 664 gaacttcgaagcttacatctgcaaggcgtccaaggg 699 ||||||||| ||||||||||||||||| | |||||| Sbjct: 41507 gaacttcgaggcttacatctgcaaggcctacaaggg 41472
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 87.7 bits (44), Expect = 7e-14 Identities = 113/136 (83%) Strand = Plus / Minus Query: 187 gaaggtgcacgtggcgatctactacgagtcgctgtgccccttctcgatccgcttcgtggc 246 ||||||| |||||||| |||||||||||||||||||||||| |||| ||||||| Sbjct: 10327270 gaaggtggacgtggcgctctactacgagtcgctgtgcccctactcggcgatgttcgtggt 10327211 Query: 247 gaaccacctcgtcaaggcctacagggacggcctactcgacgccgccgacctcaccctcgt 306 | | ||||| ||||| || |||||| ||||| |||||||||| ||||||| ||||||| Sbjct: 10327210 gggcagcctcgccaaggtcttcagggatggcctcctcgacgccgtcgacctctccctcgt 10327151 Query: 307 accctatggcaacgcc 322 ||||| ||||||||| Sbjct: 10327150 cccctacggcaacgcc 10327135 Score = 69.9 bits (35), Expect = 2e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 364 cgaggaatgccttctgaacaccgtggaggcatgcgccatcgaagcatggccggat 418 |||||| ||| | ||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 10326885 cgaggagtgcttcctgaacaccgtggaggcttgcgccatcgatgcatggccggat 10326831 Score = 63.9 bits (32), Expect = 1e-06 Identities = 65/76 (85%) Strand = Plus / Minus Query: 424 agtgcatctcggtttcatttactgcgtgtcggacctggtgatgaagaacaagcaccggga 483 ||||||| || ||||||| ||||||||| |||||||||| |||| ||||||| ||||| Sbjct: 10326706 agtgcatttccgtttcatctactgcgtggaggacctggtggtgaaccacaagcaacggga 10326647 Query: 484 gtgggagtcgtgcttc 499 |||||| || |||||| Sbjct: 10326646 gtgggaatcctgcttc 10326631 Score = 48.1 bits (24), Expect = 0.059 Identities = 33/36 (91%) Strand = Plus / Minus Query: 664 gaacttcgaagcttacatctgcaaggcgtccaaggg 699 ||||||||| ||||||||||||||||| | |||||| Sbjct: 10326142 gaacttcgaggcttacatctgcaaggcctacaaggg 10326107
>dbj|AK068091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131A15, full insert sequence Length = 1161 Score = 71.9 bits (36), Expect = 4e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 340 caccatctcctgtcagcatggccccgaggaatgccttctgaacaccgtggaggcatgcgc 399 ||||||||| || |||||||| |||||| ||| | ||||||||||||||||| ||||| Sbjct: 374 caccatctcttgccagcatggaagcgaggagtgcttcctgaacaccgtggaggcttgcgc 433 Query: 400 catcgaagcatggccg 415 |||||| ||||||||| Sbjct: 434 catcgatgcatggccg 449
>gb|DQ244863.1| Zea mays clone 11235 mRNA sequence Length = 931 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 380 aacaccgtggaggcatgcgccatcgaagcatggccggatgtgaaagtgcatctcggtttc 439 ||||||||||| || ||||||||||| || ||||||||| || | |||||| || | ||| Sbjct: 314 aacaccgtggaagcttgcgccatcgacgcctggccggatctggatgtgcatttcagcttc 373 Query: 440 atttactgcgtgtcggacctggtgatgaa 468 || ||||||||| |||||||||| |||| Sbjct: 374 atctactgcgtggaggacctggtggtgaa 402
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 0.92 Identities = 25/26 (96%) Strand = Plus / Plus Query: 141 ccaccacctccgcggcgaccgccggc 166 |||||||| ||||||||||||||||| Sbjct: 183968 ccaccaccaccgcggcgaccgccggc 183993
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 cgcggtgaccttcgccaccgc 42 ||||||||||||||||||||| Sbjct: 3578682 cgcggtgaccttcgccaccgc 3578702
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cagcttctttccaccacctcc 151 ||||||||||||||||||||| Sbjct: 17194269 cagcttctttccaccacctcc 17194249
>gb|BT028549.1| Gasterosteus aculeatus clone CNB247-A07 mRNA sequence Length = 1657 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 920 ctcataaactggtctttttct 940 ||||||||||||||||||||| Sbjct: 1597 ctcataaactggtctttttct 1617
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 cgcggtgaccttcgccaccgc 42 ||||||||||||||||||||| Sbjct: 2053735 cgcggtgaccttcgccaccgc 2053715
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 322 cgtggtcggcagcgacggcaccatc 346 |||||||||| |||||||||||||| Sbjct: 228979 cgtggtcggccgcgacggcaccatc 229003
>ref|XM_361869.1| Magnaporthe grisea 70-15 hypothetical protein (MG04343.4) partial mRNA Length = 1026 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 gccgtggtcggcagcgacggc 340 ||||||||||||||||||||| Sbjct: 498 gccgtggtcggcagcgacggc 478
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 635 gacggcaagccgctcctcgac 655 ||||||||||||||||||||| Sbjct: 1302018 gacggcaagccgctcctcgac 1301998
>gb|AY658018.1| Synthetic construct Peudomonas aeruginosa clone FLH046598.01F PA1884 gene, partial cds Length = 552 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 cgcggtgaccttcgccaccgc 42 ||||||||||||||||||||| Sbjct: 489 cgcggtgaccttcgccaccgc 509
>gb|AC166072.2| Mus musculus BAC clone RP23-226J22 from chromosome 3, complete sequence Length = 221724 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 ggcaccatctcctgtcagcat 358 ||||||||||||||||||||| Sbjct: 24141 ggcaccatctcctgtcagcat 24161
>ref|NM_166442.2| Drosophila melanogaster CG30387-RC, transcript variant C (CG30387), mRNA Length = 5642 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cagcttctttccaccacctcc 151 ||||||||||||||||||||| Sbjct: 3304 cagcttctttccaccacctcc 3284
>ref|NM_166441.2| Drosophila melanogaster CG30387-RB, transcript variant B (CG30387), mRNA Length = 5565 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cagcttctttccaccacctcc 151 ||||||||||||||||||||| Sbjct: 3227 cagcttctttccaccacctcc 3207
>gb|AC145509.2| Gasterosteus aculeatus clone CH213-128O17, complete sequence Length = 213989 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 920 ctcataaactggtctttttct 940 ||||||||||||||||||||| Sbjct: 105315 ctcataaactggtctttttct 105335
>ref|NM_137730.2| Drosophila melanogaster CG30387-RA, transcript variant A (CG30387), mRNA Length = 5257 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cagcttctttccaccacctcc 151 ||||||||||||||||||||| Sbjct: 2919 cagcttctttccaccacctcc 2899
>gb|AC165165.3| Mus musculus BAC clone RP23-121B15 from chromosome 3, complete sequence Length = 228648 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 ggcaccatctcctgtcagcat 358 ||||||||||||||||||||| Sbjct: 181543 ggcaccatctcctgtcagcat 181563
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 ccgcggcgaccgccggcgacg 170 ||||||||||||||||||||| Sbjct: 2137139 ccgcggcgaccgccggcgacg 2137159
>gb|AC119674.2| Homo sapiens chromosome 1 clone RP4-710M16, complete sequence Length = 128668 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 cagcgctcctccagcttcttt 140 ||||||||||||||||||||| Sbjct: 120053 cagcgctcctccagcttcttt 120073
>gb|AC099562.2| Homo sapiens chromosome 1 clone RP11-213P13, complete sequence Length = 168767 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 cagcgctcctccagcttcttt 140 ||||||||||||||||||||| Sbjct: 61565 cagcgctcctccagcttcttt 61585
>emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chromosome Xp11.22-11.3 Contains a nicolin 1 (NICN1) pseudogene, a novel gene, the 5'end of the ZNF157 gene for zinc finger protein 157 (HZF22) and a UBX domain containing 2 (UBXD2) pseudogene, complete sequence Length = 152659 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ccatggcgccaggcctcctcc 104 ||||||||||||||||||||| Sbjct: 105509 ccatggcgccaggcctcctcc 105529
>gb|AC007175.1|AC007175 Drosophila melanogaster, chromosome 2R, region 57D3-57E2, BAC clones DS01261 and BACR48K03, complete sequence Length = 188633 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 cagcttctttccaccacctcc 151 ||||||||||||||||||||| Sbjct: 50116 cagcttctttccaccacctcc 50096
>emb|BX950856.4| Zebrafish DNA sequence from clone DKEY-205L20 in linkage group 5, complete sequence Length = 147456 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 888 tgttattaaggttaataaatt 908 ||||||||||||||||||||| Sbjct: 66255 tgttattaaggttaataaatt 66275
>emb|AJ132349.1|AMA132349 Antirrhinum majus mRNA for SAP1 protein Length = 1137 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 830 atggattatgtttccttttgg 850 ||||||||||||||||||||| Sbjct: 1040 atggattatgtttccttttgg 1060 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 136,146,090 Number of extensions: 7102083 Number of successful extensions: 141096 Number of sequences better than 10.0: 33 Number of HSP's gapped: 141094 Number of HSP's successfully gapped: 53 Length of query: 959 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 936 Effective length of database: 18,503,978,556 Effective search space: 17319723928416 Effective search space used: 17319723928416 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
