ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf179o22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Os12g0586300:Os12g0586300 28 3.5
2AK107512:Os11g0169700 27 5.9

>Os12g0586300:Os12g0586300 |
          Length = 395
 Score = 28.1 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 345 SCSAESETSTTNGDSCKKKKRK 410
           SC + + TST+NG S KK++ K
Sbjct: 158 SCGSHTSTSTSNGGSVKKQQHK 179



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>AK107512:Os11g0169700 |
          Length = 31

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 233 PPPLARLHLPWRRR 192
           PPP   LH PWRRR
Sbjct: 18  PPPDHHLHCPWRRR 31


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 11,917,923
Number of extensions: 218495
Number of successful extensions: 568
Number of sequences better than 10.0: 2
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 2
Length of query: 170
Length of database: 15,399,855
Length adjustment: 93
Effective length of query: 77
Effective length of database: 11,676,042
Effective search space: 899055234
Effective search space used: 899055234
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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