ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf175n06 |
|---|---|
| Clone Library Name | barley_pub |
>Q9U1H8:FACE2_DROME CAAX prenyl protease 2 - Drosophila melanogaster (Fruit fly)| Length = 302 Score = 42.4 bits (98), Expect = 0.005 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 19/96 (19%) Frame = +3 Query: 810 VLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHLTP----------------- 938 V+AP+ EE VFR +M + + F V V ++ F AHL Sbjct: 154 VIAPLSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAHLHHIAERLSLGVELSTALLI 213 Query: 939 --DQFPQLFVLGVALGFTYAQTRNLLAPITIHAFWN 1040 QF + G F +A+T +++API +HAF N Sbjct: 214 GLFQFIYTTLFGFYSAFLFARTGHVMAPILVHAFCN 249
>P50333:NODJ_RHIGA Nodulation protein J - Rhizobium galegae| Length = 262 Score = 37.7 bits (86), Expect = 0.12 Identities = 31/104 (29%), Positives = 50/104 (48%) Frame = +3 Query: 627 GWLLWAGIGLFGAVISIALVGAAMSYLNGAPPEREKDSLVLLLPLIGSSTLSTAYLVGIT 806 G + WA A +I +V A ++Y E DSL+ + P+I + L+ A L + Sbjct: 116 GEMAWAATKASLAGTAIGIVTATLAY-------SEWDSLIYVFPVIALTGLAFASLSMVV 168 Query: 807 GVLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHLTP 938 LAP + VF L++ TP+ ++LS +VF L+P Sbjct: 169 AALAPSYDYLVFYQSLVI-------TPM-LVLSGSVFPVEQLSP 204
>Q9CE03:YVDC_LACLA UPF0177 protein yvdC - Lactococcus lactis subsp. lactis| (Streptococcus lactis) Length = 261 Score = 35.8 bits (81), Expect = 0.44 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 6/133 (4%) Frame = +3 Query: 681 LVGAAMSYLNGAPPEREKDSLVLLLPLIGSSTLSTAYLVGITGVLAPILEETVFR-GFLM 857 L G +N +P +DSL L +I + +T L A LEE V+R G Sbjct: 136 LTGIFAQIINQSPTTSNQDSLNELQKVIPIAVFATQTLA------AGFLEELVYRVGIFE 189 Query: 858 VSLT--KWFPTPVCVILSAAVFAFAHLTPDQFPQLF--VLGVALGFTYAQTRNLLAPITI 1025 V K+F ++L FA+ H D + L ++ + L YA+ RN +++ Sbjct: 190 VIFKNQKYFAFLTALLL----FAYMHGPTDLYSWLTYGLMSLVLTSLYAKYRNFYLNMSV 245 Query: 1026 HAFWN-SGVILLL 1061 H WN G+++ L Sbjct: 246 HLLWNLFGLVIAL 258
>P13974:YPRA_ECOLI Uncharacterized 24.3 kDa protein - Escherichia coli| Length = 217 Score = 35.8 bits (81), Expect = 0.44 Identities = 45/229 (19%), Positives = 93/229 (40%), Gaps = 9/229 (3%) Frame = +3 Query: 369 QTVVLSMVGCGVSFALTGLVEQSILQYVGYSAAGATIDEKAEILFLGQLSVTAVVLGVIF 548 Q +++ + G+S+ ++EQ++L Y LF +V +L V Sbjct: 10 QFMLVMLAAWGISWGARFVMEQAVLLY----------GSGKNYLFFSHGTVLMYLLCVFL 59 Query: 549 SITNTFRPFPDDVFRYDVKEPFKLQNGWLLWAGIGLFGAVISIALVGAAMSYLNGAPPER 728 P P +V P+ + +++ G+ L G +++ A ++ ++ Sbjct: 60 VYRRWIAPLPVVGQLRNVGVPWLVGAMAVVYVGVFLLGKALALP----AEPFMTKLFADK 115 Query: 729 EKDSLVLLLPLIGSSTLSTAYLVGITGVLAPILEETVFRGFLM------VSLTKWFPTPV 890 ++L TL T + +LAP+ EET+FRG ++ T W + Sbjct: 116 SIPDVIL--------TLLTIF------ILAPLNEETLFRGIMLNVFRSRYCWTMW----L 157 Query: 891 CVILSAAVFAFAHLTPDQ---FPQLFVLGVALGFTYAQTRNLLAPITIH 1028 ++++ +F AH +LF++G+ ++ LL P+ +H Sbjct: 158 GALITSLLFVAAHSQYQNLLTLAELFLVGLITSVARIRSGGLLLPVLLH 206
>Q9CJ67:YBDI_LACLA UPF0177 protein ybdI - Lactococcus lactis subsp. lactis| (Streptococcus lactis) Length = 181 Score = 34.3 bits (77), Expect = 1.3 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Frame = +3 Query: 603 KEPFKLQNGWLLWAGIGLFGAVISIALVG--AAMSYLNGAPP-----EREKDSLVLLLPL 761 KE F+LQN LLW L G VI ++G A YL P E E + + Sbjct: 33 KETFRLQN--LLW----LLGFVIVGYILGNIAHYLYLRFVPALDTIVENEATNNFV---- 82 Query: 762 IGSSTLSTAYLVGITGVLAPILEETVFRGFLMVSLT-KWFPTPVCVILSAAVFAFAHLTP 938 S L T ++ + V+API EE +FR + + KW + ILS +F H Sbjct: 83 --DSFLPTWFVYILMVVIAPIYEELMFREYFYRFFSHKW----LAYILSILLFTLIHTRL 136 Query: 939 D-QFPQLFVLGVALGFTYAQTRNLLAPITIHAFWNSGVIL 1055 F + + V + T+ + + + I +H +N V++ Sbjct: 137 TWSFFEYLPMSVIVTSTFHRYKRVSDSIIVHGGYNLMVLI 176
>Q9I0M3:FTSK_PSEAE DNA translocase ftsK - Pseudomonas aeruginosa| Length = 811 Score = 34.3 bits (77), Expect = 1.3 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 330 WPILRRWDVPWEWQTVVLSMVGCGVSFALTGLVEQSILQYVGYSAAG 470 W + RR ++PWEW T + S G+ F ++ S L Y+ + A+G Sbjct: 101 WQVFRRRNLPWEWNTWLFSWRLVGLIFL---ILAGSALAYIHFHASG 144
>Q38833:CHLG_ARATH Chlorophyll synthase, chloroplast precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 387 Score = 34.3 bits (77), Expect = 1.3 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 14/107 (13%) Frame = +3 Query: 543 IFSITNTFRPFPDDVFRYDVKEPFKLQNGW-LLWAGIGLFG-----------AVISIALV 686 I +I +RP P + EP + W LL G+G+ G V +AL Sbjct: 162 IDAINEPYRPIPSGA----ISEPEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALG 217 Query: 687 GAAMSYLNGAPPEREKDSLVLLLPLIGSSTLSTAYLVG--ITGVLAP 821 G+ +SY+ APP + K + + +G+S +S + G + G L P Sbjct: 218 GSLLSYIYSAPPLKLKQNGWVGNFALGASYISLPWWAGQALFGTLTP 264
>O52619:NODJ_RHIME Nodulation protein J - Rhizobium meliloti (Sinorhizobium meliloti)| Length = 262 Score = 33.9 bits (76), Expect = 1.7 Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Frame = +3 Query: 627 GWLLWAGIGLFGAVISIALVGAAMSYLNGAPPEREKDSLVLLLPLIGSSTLSTAYLVGIT 806 G L WA A I +V A + Y E SL+ LP+I + L+ A L I Sbjct: 116 GELAWAATKASLAGTGIGVVAATLGYT-------EWVSLLYALPVIALTGLAFASLAMIV 168 Query: 807 GVLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVF-------AFAHLT 935 LAP E +F L++ TP+ + LS AVF AF H+T Sbjct: 169 TALAPSYEYFIFYQTLVI-------TPM-LFLSGAVFPVNQLPGAFQHVT 210
>Q2NBS1:KUP_ERYLH Probable potassium transport system protein kup - Erythrobacter| litoralis (strain HTCC2594) Length = 622 Score = 33.1 bits (74), Expect = 2.9 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 11/101 (10%) Frame = +3 Query: 741 LVLLLPLIGSSTLSTAYLVGITGVLAPILEETVFRGFLMVSLTKW---FPTPVCV---IL 902 ++L+L SS L++AY + +TG + +T+ L+V + KW + PV + I+ Sbjct: 352 ILLVLTFQNSSNLASAYGIAVTGA---VTIDTLLMAVLLVGVWKWKWYYAAPVVIVFLII 408 Query: 903 SAAVFAFAHLT--PD--QFPQLFVLGV-ALGFTYAQTRNLL 1010 A FA A+LT PD FP + L V L T+A+ R L+ Sbjct: 409 DGAYFA-ANLTKVPDGGWFPLVVGLIVFTLLTTWARGRKLM 448
>Q9Y256:FACE2_HUMAN CAAX prenyl protease 2 - Homo sapiens (Human)| Length = 329 Score = 33.1 bits (74), Expect = 2.9 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 20/97 (20%) Frame = +3 Query: 810 VLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHL------------------- 932 V+AP+ EE VFR ++ L V F AH Sbjct: 169 VIAPLTEELVFRACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFL 228 Query: 933 -TPDQFPQLFVLGVALGFTYAQTRNLLAPITIHAFWN 1040 QF V G F + +T +L+ P+ H+F N Sbjct: 229 SAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCN 265
>Q9CJB5:YAIF_LACLA UPF0177 protein yaiF - Lactococcus lactis subsp. lactis| (Streptococcus lactis) Length = 218 Score = 32.7 bits (73), Expect = 3.8 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Frame = +3 Query: 768 SSTLSTAYLVGITGVLAPILEETVFRG--FLMVSLTKWFPTPVCVILSAAVFAFAH--LT 935 SS L V ++ +LAPILEE+++R + + +W LS F++ H + Sbjct: 125 SSLLFPGQFVAVS-ILAPILEESIYRACFYKLFGYYRW-----TFFLSCFFFSYVHSGFS 178 Query: 936 PDQFPQLFVLGVALGFTYAQTRNLLAPITIHAFWNS 1043 D L L +AL + Y + + L I +HA +N+ Sbjct: 179 WDILGYL-PLSIALTYVYHRRQVLTDSILLHALFNT 213
>P28797:GRN_CAVPO Granulins precursor - Cavia porcellus (Guinea pig)| Length = 591 Score = 32.7 bits (73), Expect = 3.8 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 4/124 (3%) Frame = +2 Query: 746 PFTATNWLINSQHCLFGGDYWSSSTNSGGDCVPRISNGVLD*VV----SYSSLRDSQCCC 913 PF+ + HC G + S+ GG C+ R +L V + S CC Sbjct: 71 PFSQAMACGDGHHCCPYGFHCSTD---GGTCIQRPDIHLLGAVQCPGGEFECPDSSTCCH 127 Query: 914 ICLRSFDT*SIPTTVCIRCCTRIYICXXXXXXXXXXXTCILELGSYTAANLSSVARVRYQ 1093 + S+ +P C C R++ C C+ LGS+ R Y Sbjct: 128 MLDGSWGCCPMPQASC--CEDRVHCCPHGASCDLVHIRCVTALGSHPLTTKLPAQRTNYT 185 Query: 1094 GAIG 1105 GA G Sbjct: 186 GAEG 189
>P57171:CYSK_BUCAI Cysteine synthase - Buchnera aphidicola subsp. Acyrthosiphon pisum| (Acyrthosiphon pisum symbiotic bacterium) Length = 315 Score = 32.7 bits (73), Expect = 3.8 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = -2 Query: 916 NTAALRITQTGVGNHLVKDTIRNPRNTVSSRIGA 815 NT +R+ + G GN LVK RNP +V RIGA Sbjct: 14 NTPLVRLNRIGNGNILVKIESRNPSFSVKCRIGA 47
>P0AGM7:URAA_ECOLI Uracil permease - Escherichia coli| Length = 429 Score = 32.3 bits (72), Expect = 4.9 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 4/141 (2%) Frame = +3 Query: 615 KLQNGWL--LW--AGIGLFGAVISIALVGAAMSYLNGAPPEREKDSLVLLLPLIGSSTLS 782 K GWL L+ A +G AVI + L G A LLP G + S Sbjct: 110 KAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAG-------------LLPAEGQTPDS 156 Query: 783 TAYLVGITGVLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHLTPDQFPQLFV 962 ++ IT + +L +FRGFL + P + V++ A+ +FA D P + Sbjct: 157 KTIIISITTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYAL-SFAMGIVDTTPIINA 210 Query: 963 LGVALGFTYAQTRNLLAPITI 1025 AL Y A +TI Sbjct: 211 HWFALPTLYTPRFEWFAILTI 231
>P0AGM8:URAA_ECO57 Uracil permease - Escherichia coli O157:H7| Length = 429 Score = 32.3 bits (72), Expect = 4.9 Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 4/141 (2%) Frame = +3 Query: 615 KLQNGWL--LW--AGIGLFGAVISIALVGAAMSYLNGAPPEREKDSLVLLLPLIGSSTLS 782 K GWL L+ A +G AVI + L G A LLP G + S Sbjct: 110 KAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAG-------------LLPAEGQTPDS 156 Query: 783 TAYLVGITGVLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHLTPDQFPQLFV 962 ++ IT + +L +FRGFL + P + V++ A+ +FA D P + Sbjct: 157 KTIIISITTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYAL-SFAMGIVDTTPIINA 210 Query: 963 LGVALGFTYAQTRNLLAPITI 1025 AL Y A +TI Sbjct: 211 HWFALPTLYTPRFEWFAILTI 231
>P57791:FACE2_MOUSE CAAX prenyl protease 2 - Mus musculus (Mouse)| Length = 329 Score = 32.3 bits (72), Expect = 4.9 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 20/97 (20%) Frame = +3 Query: 810 VLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHL------------------- 932 V+AP+ EE VFR ++ L V F AH Sbjct: 169 VIAPLTEELVFRACMLPMLAPCTGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGSIFV 228 Query: 933 -TPDQFPQLFVLGVALGFTYAQTRNLLAPITIHAFWN 1040 QF V G F + +T +L+ P+ H+F N Sbjct: 229 SAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCN 265
>O34876:FTSX_BACSU Cell division protein ftsX homolog - Bacillus subtilis| Length = 296 Score = 32.0 bits (71), Expect = 6.4 Identities = 30/87 (34%), Positives = 42/87 (48%) Frame = +3 Query: 600 VKEPFKLQNGWLLWAGIGLFGAVISIALVGAAMSYLNGAPPEREKDSLVLLLPLIGSSTL 779 ++ PF L+ G LL G+FG+VI IALV + Y+ G + + S V LLP Sbjct: 215 IRWPFFLE-GLLL----GVFGSVIPIALVLSTYQYVIGWVVPKVQGSFVSLLPYNPFVFQ 269 Query: 780 STAYLVGITGVLAPILEETVFRGFLMV 860 + L+ I V+ T R FL V Sbjct: 270 VSLVLIAIGAVIGVWGSLTSIRKFLRV 296
>P72336:NODJ_RHIS3 Nodulation protein J - Rhizobium sp. (strain N33)| Length = 262 Score = 31.6 bits (70), Expect = 8.4 Identities = 34/110 (30%), Positives = 48/110 (43%) Frame = +3 Query: 627 GWLLWAGIGLFGAVISIALVGAAMSYLNGAPPEREKDSLVLLLPLIGSSTLSTAYLVGIT 806 G L+WA F A +IA+V Y + S++ +LP+I + L+ A L I Sbjct: 116 GELVWATTRAFLAGTAIAMVAVIAGYSAWS-------SVLYVLPVIALTGLAFASLAMIV 168 Query: 807 GVLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHLTPDQFPQL 956 LAP +F L F TP+ + LS AVF L P F + Sbjct: 169 TALAPSYHYFIFYQTL-------FLTPM-LFLSGAVFPVTQL-PSTFQHI 209
>P24144:NODJ_RHILT Nodulation protein J - Rhizobium leguminosarum bv. trifolii| Length = 262 Score = 31.6 bits (70), Expect = 8.4 Identities = 33/111 (29%), Positives = 48/111 (43%) Frame = +3 Query: 627 GWLLWAGIGLFGAVISIALVGAAMSYLNGAPPEREKDSLVLLLPLIGSSTLSTAYLVGIT 806 G + WA A I +V AA+ Y SL+ LP+I + L+ A L + Sbjct: 116 GEMAWAATKAALAGAGIGVVAAALGYTQWL-------SLLYALPVIALTGLAFASLGMVV 168 Query: 807 GVLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHLTPDQFPQLF 959 LAP + +F L++ TP+ + LS AVF DQ P +F Sbjct: 169 TALAPSYDYFIFYQTLVI-------TPI-LFLSGAVFPV-----DQLPIVF 206 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 233,471,925 Number of extensions: 5040925 Number of successful extensions: 12847 Number of sequences better than 10.0: 19 Number of HSP's gapped: 12838 Number of HSP's successfully gapped: 19 Length of query: 468 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 351 Effective length of database: 68,593,924 Effective search space: 24076467324 Effective search space used: 24076467324 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
