ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf175l22 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os02g26440:12002.t02338:unspliced-genomic prefoldin subunit 1, putative, expressed| Length = 4046 Score = 92.7 bits (196), Expect(5) = 2e-52 Identities = 41/43 (95%), Positives = 42/43 (97%) Frame = +3 / +1 Query: 312 QTSKEYLEKQLGEVENNIRELLQQDPGLARQILSMTVQ*EVVF 440 QTSKEYLEKQL EVENNIRELLQQDPGLARQILSMTVQ*+VVF Sbjct: 3412 QTSKEYLEKQLAEVENNIRELLQQDPGLARQILSMTVQ*KVVF 3540 Score = 75.3 bits (158), Expect(5) = 2e-52 Identities = 31/38 (81%), Positives = 34/38 (89%) Frame = +3 / +3 Query: 114 QLQSQMCSKESEKKRAYLTLEELSQLPDDTNTYKAIGK 227 QLQ+QM SKE EKKRAYLTLEEL QLPD+TNTYK +GK Sbjct: 2154 QLQTQMRSKEGEKKRAYLTLEELRQLPDNTNTYKTVGK 2267 Score = 56.5 bits (117), Expect(5) = 2e-52 Identities = 23/28 (82%), Positives = 28/28 (100%) Frame = +3 / +1 Query: 231 FILEPRSLLVNEQEKKLNDSETAISSMQ 314 FILEP+SLL+NEQE+KLNDSE+AI+SMQ Sbjct: 3235 FILEPKSLLLNEQEQKLNDSESAIASMQ 3318 Score = 40.9 bits (83), Expect(5) = 2e-52 Identities = 16/22 (72%), Positives = 21/22 (95%) Frame = +3 / +2 Query: 63 AFVELQSRMIETTGKIKQLQSQ 128 AFVELQ RMI+TTGKIKQ++++ Sbjct: 359 AFVELQGRMIDTTGKIKQVRAR 424 Score = 26.3 bits (51), Expect(5) = 2e-52 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = +1 / +2 Query: 28 TRSPWRTNPTER 63 T PWRT PTER Sbjct: 167 TPLPWRTKPTER 202 Score = 89.5 bits (189), Expect(5) = 1e-43 Identities = 38/42 (90%), Positives = 39/42 (92%) Frame = -2 / -1 Query: 439 KTTSHWTVIERIWRASPGSC*SSSLMLFSTSPNCFSRYSLEV 314 KTT H TVI+RIWRASPGSC*SSSLMLFSTS NCFSRYSLEV Sbjct: 3539 KTTFH*TVIDRIWRASPGSC*SSSLMLFSTSANCFSRYSLEV 3414 Score = 62.5 bits (130), Expect(5) = 1e-43 Identities = 26/37 (70%), Positives = 28/37 (75%) Frame = -3 / -3 Query: 225 YQWPCKCLYHQAIG*VPPV*GTHASFHSL*NTSEIVT 115 YQ CKCLY+ AIG VPPV*G HASFH L*+ SE T Sbjct: 2265 YQQSCKCLYYLAIGEVPPV*GKHASFHPL*SASEFAT 2155 Score = 40.5 bits (82), Expect(5) = 1e-43 Identities = 18/28 (64%), Positives = 20/28 (71%) Frame = -1 / -3 Query: 314 LH*RYCSLTVI*LFLLLIYQK*SWLQNK 231 LH YC+ TVI L LLI Q+* WLQNK Sbjct: 3318 LHRCYCTFTVIKLLFLLIQQE*FWLQNK 3235 Score = 38.2 bits (77), Expect(5) = 1e-43 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = -2 / -3 Query: 115 CLILPVVSIIRLCSSTKA 62 CLI PVVSIIR CSSTKA Sbjct: 411 CLIFPVVSIIRPCSSTKA 358 Score = 31.3 bits (62), Expect(5) = 1e-43 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 / -2 Query: 75 ALRKPLGWVRPPW 37 A PLGW+RPPW Sbjct: 214 ATHSPLGWLRPPW 176 Score = 79.0 bits (166), Expect(5) = 1e-39 Identities = 33/52 (63%), Positives = 40/52 (76%) Frame = +1 / +2 Query: 313 RLPRNILRNSWEKWRTTLESYFSRTLGLHARFSQ*LSSERWFLNVFLDGMCQ 468 RLPRNILR+SW+KWRTT ESYFSRTLG HAR Q* SE+ ++F+ C+ Sbjct: 3413 RLPRNILRSSWQKWRTT*ESYFSRTLGWHARSYQ*QFSEK*SFSIFVSLFCR 3568 Score = 67.0 bits (140), Expect(5) = 1e-39 Identities = 28/38 (73%), Positives = 30/38 (78%) Frame = +1 / +1 Query: 115 SYNLRCVLKRVKRSVRTLHWRNLANCLMIQTLTRPLVK 228 S LRC LKRVKRSV T HWRN ANC +IQTLTR LV+ Sbjct: 2155 SCKLRCALKRVKRSVLTSHWRNFANCQIIQTLTRLLVR 2268 Score = 43.2 bits (88), Expect(5) = 1e-39 Identities = 18/28 (64%), Positives = 22/28 (78%) Frame = +1 / +2 Query: 232 LFWSQDHFW*MSKRKS*MTVRLQYRQCR 315 LFWSQ+H *MSK KS MTV++Q +CR Sbjct: 3236 LFWSQNHSC*MSKNKSLMTVKVQ*HRCR 3319 Score = 34.1 bits (68), Expect(5) = 1e-39 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = +2 / +1 Query: 59 SGFRRAAKSDDRDHRQDQ 112 +GFR AA SDDR HR+DQ Sbjct: 355 AGFRGAAGSDDRHHREDQ 408 Score = 24.9 bits (48), Expect(5) = 1e-39 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = +2 / +3 Query: 38 HGGRTQPSG 64 HGGR+QPSG Sbjct: 177 HGGRSQPSG 203 Score = 75.3 bits (158), Expect(4) = 3e-32 Identities = 31/39 (79%), Positives = 33/39 (84%) Frame = +2 / +3 Query: 314 DFQGIS*ETVGRSGEQH*RATSAGPWACTPDSLNDCPVR 430 DFQGIS*E VGRSGEQH RATSAGPWA TPD +ND V+ Sbjct: 3414 DFQGIS*EAVGRSGEQHKRATSAGPWAGTPDPINDSSVK 3530 Score = 56.5 bits (117), Expect(4) = 3e-32 Identities = 26/38 (68%), Positives = 29/38 (76%) Frame = +2 / +2 Query: 113 TVTISDVF*RE*KEACVPYTGGT*PIA**YKHLQGHW* 226 +V SD *R *KEAC+P+TGGT PIA *YKHLQ W* Sbjct: 2153 SVANSDAL*RG*KEACLPHTGGTSPIAR*YKHLQDCW* 2266 Score = 40.0 bits (81), Expect(4) = 3e-32 Identities = 18/28 (64%), Positives = 22/28 (78%) Frame = +2 / +3 Query: 230 VYFGAKITSGK*AREKAK*Q*DCNIVNA 313 +YFGAKIT +*AR KA *Q* CN ++A Sbjct: 3234 IYFGAKITPAE*ARTKA**Q*KCNSIDA 3317 Score = 31.8 bits (63), Expect(4) = 3e-32 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = +1 / +3 Query: 61 RLS*SCKVG*SRPPARSNSYNL 126 RLS SC+VG*S PP RS+ L Sbjct: 357 RLSWSCRVG*STPPGRSSRSEL 422 Score = 72.1 bits (151), Expect(5) = 3e-28 Identities = 31/38 (81%), Positives = 31/38 (81%) Frame = -3 / -2 Query: 426 TGQSLRESGVQAQGPAEVAL*CCSPLLPTVSQDIPWKS 313 T SL SGV AQGPAEVAL CCSPLLPT SQDIPWKS Sbjct: 3526 TELSLIGSGVPAQGPAEVALLCCSPLLPTASQDIPWKS 3413 Score = 43.2 bits (88), Expect(5) = 3e-28 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -1 / -1 Query: 224 TNGLVSVCIIRQLAKFLQCKV 162 TN LVSVCII QLAKFLQC+V Sbjct: 2264 TNSLVSVCIIWQLAKFLQCEV 2202 Score = 36.8 bits (74), Expect(5) = 3e-28 Identities = 17/27 (62%), Positives = 18/27 (66%) Frame = -3 / -2 Query: 312 ALTILQSHCHLAFSLAHLPEVILAPK* 232 A +L HCH AF LAH VILAPK* Sbjct: 3316 ASMLLHFHCH*AFVLAHSAGVILAPK* 3236 Score = 31.8 bits (63), Expect(5) = 3e-28 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = -3 / -1 Query: 129 SEIVTV*SCRWSRSSDFAALRKP 61 SE+ *S RW RSSD AA RKP Sbjct: 425 SELGPA*SSRWCRSSDPAAPRKP 357 Score = 24.9 bits (48), Expect(5) = 3e-28 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 / -3 Query: 62 RSVGFVRHG 36 RSVGFVRHG Sbjct: 201 RSVGFVRHG 175 Score = 70.3 bits (147), Expect(4) = 3e-20 Identities = 32/43 (74%), Positives = 37/43 (86%) Frame = -1 / -3 Query: 440 KNHLSLDSH*ENLACKPRVLLK*LSNVVLHFSQLFLKIFLGSL 312 K++ SL+ H* +LAC+PRVLLK*LS VVLHF QL LKIFLGSL Sbjct: 3540 KDYFSLNCH**DLACQPRVLLK*LSYVVLHFCQLLLKIFLGSL 3412 Score = 37.7 bits (76), Expect(4) = 3e-20 Identities = 22/37 (59%), Positives = 22/37 (59%) Frame = -2 / -2 Query: 226 LPMAL*VFVXXXXXXXXXSVRYARFFSLSLEHI*DCN 116 LP L*VFV SVR ARFFS SLE I* CN Sbjct: 2266 LPTVL*VFVLSGNWRSSSSVR*ARFFSPSLERI*VCN 2156 Score = 31.8 bits (63), Expect(4) = 3e-20 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = -1 / -2 Query: 101 GGLDHPTLQLYES 63 GG+DHPTLQL+ES Sbjct: 397 GGVDHPTLQLHES 359 Score = 22.6 bits (43), Expect(4) = 3e-20 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = -2 / -1 Query: 313 CIDDIAVXXXXXXXXXXXXXSDLGSKIN 230 CID IA+ SD GSKIN Sbjct: 3317 CIDAIALSLSLSFCSCSFSRSDFGSKIN 3234
>LOC_Os03g53270:12003.t04649:unspliced-genomic stem-specific protein TSJT1, putative, expressed| Length = 2987 Score = 38.6 bits (78), Expect = 0.040 Identities = 17/50 (34%), Positives = 28/50 (56%) Frame = +1 / -3 Query: 43 RTNPTERLS*SCKVG*SRPPARSNSYNLRCVLKRVKRSVRTLHWRNLANC 192 ++ T+ S*+C+V +R A +N+Y LRC + VKR L + + C Sbjct: 1836 KSRVTKHNS*NCRVAENRRVASNNNYELRCTILMVKRKSMLLLFIRMTTC 1687
>LOC_Os09g14400:12009.t01229:unspliced-genomic hypothetical protein| Length = 1100 Score = 33.1 bits (66), Expect = 1.8 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = +3 / -1 Query: 111 KQLQSQMCSKESEKKRAYLTLEELSQLPDDTNT 209 KQL+ Q S E EKK+AYL ++++S NT Sbjct: 812 KQLEQQSQSSEYEKKKAYLGIKKISVCAQWQNT 714
>LOC_Os11g46010:12011.t04126:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2973 Score = 32.7 bits (65), Expect = 2.5 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 / +1 Query: 448 IHSKTTSHWTVIERIWR 398 +HS TT HWTV++RI R Sbjct: 2395 LHSPTTVHWTVVKRILR 2445
>LOC_Os11g43230:12011.t03853:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 3569 Score = 32.2 bits (64), Expect = 3.4 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -2 / +3 Query: 448 IHSKTTSHWTVIERIWR 398 +H+ TT HWTV++RI R Sbjct: 3297 LHAPTTDHWTVVKRILR 3347
>LOC_Os07g32480:12007.t02932:unspliced-genomic mitotic checkpoint serine/threonine-protein kinase BUB1, putative,| expressed Length = 3181 Score = 32.2 bits (64), Expect = 3.4 Identities = 12/29 (41%), Positives = 21/29 (72%) Frame = -1 / +2 Query: 278 LFLLLIYQK*SWLQNKHFTNGLVSVCIIR 192 L++L+ + + +QN HF GLV++C+IR Sbjct: 902 LYVLIFFFEIMIMQN*HFVPGLVNLCLIR 988
>LOC_Os05g49800:12005.t04413:unspliced-genomic ketol-acid reductoisomerase, chloroplast precursor, putative,| expressed Length = 3422 Score = 32.2 bits (64), Expect = 3.4 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -3 / -1 Query: 57 GWVRPPWGSSEMGRDDGA 4 GW RPPW S+ +DGA Sbjct: 83 GWSRPPWRSASADEEDGA 30
>LOC_Os04g38170:12004.t03388:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2597 Score = 32.2 bits (64), Expect = 3.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 / +3 Query: 448 IHSKTTSHWTVIERIWRASPGSC* 377 +HS TT HW ++RI R SC* Sbjct: 1320 LHSPTTVHWAAVKRILRYLNSSC* 1391
>LOC_Os09g19830:12009.t01717:unspliced-genomic YDG/SRA domain containing protein, expressed| Length = 4611 Score = 31.8 bits (63), Expect = 4.6 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = -3 / +2 Query: 303 ILQSHCHLAFSLAHLPEVILAPK* 232 IL+S+CHL S+AH+ EV+ +* Sbjct: 2249 ILESNCHLLDSIAHIKEVLTVQR* 2320
>LOC_Os08g34650:12008.t03205:unspliced-genomic receptor-like protein kinase precursor, putative, expressed| Length = 5299 Score = 31.8 bits (63), Expect = 4.6 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 / -3 Query: 439 LNVFLDGMCQQDLCFAPRKKPLCY 510 LN FL+G+CQQ+ C + + CY Sbjct: 1532 LNKFLEGLCQQNYCL*NQLRTNCY 1461
>LOC_Os01g65410:12001.t05906:unspliced-genomic serine hydroxymethyltransferase, mitochondrial precursor, putative,| expressed Length = 4267 Score = 31.8 bits (63), Expect = 4.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 / +1 Query: 310 CRLPRNILRNSWEKWRTTLESYFSRTLGLHARFSQ 414 C LPRN+L+ S+ W +L Y + L+ SQ Sbjct: 1504 C*LPRNVLKKSFNLWLPSLPGYLLSPVDLNHSTSQ 1608
>LOC_Os03g29750:12003.t02590:unspliced-genomic expressed protein| Length = 6207 Score = 25.8 bits (50), Expect(2) = 5.6 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = +1 / +1 Query: 487 PRKKPLCYELNCYWIC 534 P+ K + E+ CYWIC Sbjct: 1366 PKCKLVVSEMICYWIC 1413 Score = 22.6 bits (43), Expect(2) = 5.6 Identities = 5/17 (29%), Positives = 10/17 (58%) Frame = +2 / +1 Query: 515 LTATGFVMSFNCYWFCD 565 + + F++ C WFC+ Sbjct: 1408 ICSLSFLLMLTCDWFCE 1458
>LOC_Os08g31780:12008.t02923:unspliced-genomic mla1, putative, expressed| Length = 3635 Score = 31.3 bits (62), Expect = 6.4 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3 / +1 Query: 72 ELQSRMIETTGKIKQLQSQMCSKESEKKRAYLTLEELSQLPDDTNTYK 215 +L + + E GK+K L S + S E + LE+LSQL + + K Sbjct: 55 KLSTLLEEEYGKLKGLHSGIASLRDELRSMEAALEDLSQLEEPSQQVK 198
>LOC_Os08g15230:12008.t01397:unspliced-genomic expressed protein| Length = 3950 Score = 31.3 bits (62), Expect = 6.4 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 / +1 Query: 467 NKICVLPRGRSPFVMSLTATGFVMSFNCYWF 559 NK+CV P +S + L++TG ++ C+ F Sbjct: 1804 NKVCVFPLSKSWVNIKLSSTGIAINIWCFLF 1896
>LOC_Os06g39540:12006.t03651:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4353 Score = 31.3 bits (62), Expect = 6.4 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 / +1 Query: 448 IHSKTTSHWTVIERIWRASPGS 383 +HS TT HWT ++R+ R G+ Sbjct: 3760 LHSPTTLHWTAVKRVLRYVSGT 3825
>LOC_Os06g13540:12006.t01229:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 4353 Score = 31.3 bits (62), Expect = 6.4 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 / +1 Query: 448 IHSKTTSHWTVIERIWRASPGS 383 +HS TT HWT ++R+ R G+ Sbjct: 3760 LHSPTTLHWTAVKRVLRYVSGT 3825
>LOC_Os04g43720:12004.t03912:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5380 Score = 31.3 bits (62), Expect = 6.4 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 / +1 Query: 448 IHSKTTSHWTVIERIWRASPGS 383 +HS TT HWT ++R+ R G+ Sbjct: 3796 LHSPTTLHWTAVKRVLRYVSGT 3861
>LOC_Os02g49880:12002.t04572:unspliced-genomic zinc finger protein CONSTANS-LIKE 16, putative, expressed| Length = 2903 Score = 31.3 bits (62), Expect = 6.4 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +3 / -1 Query: 351 VENNIRELLQQDPGLARQILSMTVQ*EVVFECIS 452 + NN+ L Q++P +ARQI S + +FE ++ Sbjct: 2723 INNNLPSLNQREPAVARQIASRLINTPKMFETVN 2622
>LOC_Os02g49870:12002.t04571:unspliced-genomic expressed protein| Length = 2484 Score = 31.3 bits (62), Expect = 6.4 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +3 / +2 Query: 351 VENNIRELLQQDPGLARQILSMTVQ*EVVFECIS 452 + NN+ L Q++P +ARQI S + +FE ++ Sbjct: 1070 INNNLPSLNQREPAVARQIASRLINTPKMFETVN 1171
>LOC_Os11g47150:12011.t04190:unspliced-genomic OsWAK122 - OsWAK receptor-like protein kinase| Length = 4302 Score = 30.9 bits (61), Expect = 8.7 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 / -3 Query: 40 WRTNPTERLS*SCKVG*SRPPARSNS 117 WR +P+ R S* + SRPP R++S Sbjct: 544 WRRHPSSRTS*RSRSSSSRPPCRTSS 467
>LOC_Os05g45420:12005.t04030:unspliced-genomic SNF1-related protein kinase catalytic alpha subunit KIN10,| putative, expressed Length = 4615 Score = 30.9 bits (61), Expect = 8.7 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +2 / +3 Query: 14 SLPISLDPHGGRTQPSGFRRAAKSD 88 SL +SL PH PS FR AKS+ Sbjct: 66 SLSLSLSPHSRAAPPSPFRARAKSE 140
>LOC_Os01g50910:12001.t04525:unspliced-genomic late embryogenesis abundant protein, group 3, putative, expressed| Length = 1229 Score = 30.9 bits (61), Expect = 8.7 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +2 / +2 Query: 44 GRTQPSGFRRAAKSDDRDHRQDQ 112 GR SG RRA + DRD RQ Q Sbjct: 653 GRQAESGRRRAVRQGDRDRRQGQ 721 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 246,701,380 Number of extensions: 3757392 Number of successful extensions: 14328 Number of sequences better than 10.0: 22 Length of query: 208 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 160 Effective length of database: 52,912,542 Effective search space: 8466006720 Effective search space used: 8466006720 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
