ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf178p22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P54487:YQGE_BACSU Uncharacterized protein yqgE - Bacillus subtilis 34 0.79
2Q9ERS1:KCNKC_RAT Potassium channel subfamily K member 12 - Rattu... 34 1.0
3Q06644:PMT7_YEAST Dolichyl-phosphate-mannose--protein mannosyltr... 33 1.8
4P75569:PTG3C_MYCPN PTS system glucose-specific EIICBA component ... 32 3.9
5Q8EFB4:HIS5_SHEON Imidazole glycerol phosphate synthase subunit ... 32 5.1
6P51794:CLCN4_RAT Chloride channel protein 4 - Rattus norvegicus ... 32 5.1
7Q61418:CLCN4_MOUSE Chloride channel protein 4 - Mus musculus (Mo... 32 5.1
8P51793:CLCN4_HUMAN Chloride channel protein 4 - Homo sapiens (Hu... 32 5.1
9Q10482:STM1_SCHPO Seven transmembrane protein 1 - Schizosaccharo... 31 6.7

>P54487:YQGE_BACSU Uncharacterized protein yqgE - Bacillus subtilis|
          Length = 430
 Score = 34.3 bits (77), Expect = 0.79
 Identities = 18/82 (21%), Positives = 40/82 (48%)
 Frame = +2

Query: 266 TLSGISSLGVLFESTFIGIYIWFAPREKKKLVMMMVSPILIIFGMAVFFTSFSFHTHQMR 445
           T+ G+ SLG+   +TF+ +Y+W   ++  K + + +  + I+    + F        ++ 
Sbjct: 22  TIGGLYSLGIALSNTFVNVYLW---KQSGKFIDLAIYNLSIVTMQPITFYLAGRLAKKID 78

Query: 446 KEFVGSIGLVASILMYGSPLVA 511
           + F+   G++     Y S L+A
Sbjct: 79  RVFILRFGVIFLAAFYLSVLLA 100



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>Q9ERS1:KCNKC_RAT Potassium channel subfamily K member 12 - Rattus norvegicus (Rat)|
          Length = 430

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = -3

Query: 860 RHSVQRKENVFVAQEGSLGLRLWLFVPSCCLG*LQLSVHLLAQYQDSSWVLPCICCKCST 681
           +H+  R + ++      LG  L++ +  CC+  L   + +L + Q  +W+L  + C+C T
Sbjct: 266 QHAAYRNQGLY-----RLGNFLFILLGVCCIYSLFNVISILIK-QVLNWMLRKLSCRCCT 319

Query: 680 R--PTEGYPLSSQ*SLVP 633
           R  P  G PLS + ++ P
Sbjct: 320 RCCPAPGAPLSRRNAITP 337



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>Q06644:PMT7_YEAST Dolichyl-phosphate-mannose--protein mannosyltransferase 7 -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 662

 Score = 33.1 bits (74), Expect = 1.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 200 LFSSLTYTWYGLPVVSSGWENWTLSGIS---SLGVLFESTFIGIYIW 331
           LFS + Y++  + +   G  NW  + I+   SLG+   S FIGI  W
Sbjct: 162 LFSVVIYSFISISIAKLGTTNWFANVITLSISLGLAISSKFIGIVTW 208



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>P75569:PTG3C_MYCPN PTS system glucose-specific EIICBA component - Mycoplasma|
           pneumoniae
          Length = 940

 Score = 32.0 bits (71), Expect = 3.9
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 185 PYILTLFSSLTYTWYGLPVVSSGWENWTLSGI-SSLGVLFESTFIGIYIWFA-PREKKKL 358
           P+  T      + +YG+  V +    W ++ + +++G  F  +FI   ++ A P  ++ L
Sbjct: 534 PFEFTFLFLAPWLFYGVHAVLAAVSFWLMNILGANVGQTFSGSFIDFILYGALPDGRRWL 593

Query: 359 VMMMVSPILIIFGMAVFFTSFSF 427
               + PI+ +F  A++F +F F
Sbjct: 594 ANSYLVPIIGLFLAAIYFPTFYF 616



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>Q8EFB4:HIS5_SHEON Imidazole glycerol phosphate synthase subunit hisH - Shewanella|
           oneidensis
          Length = 221

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = +2

Query: 74  VTTGIIGSVVCFLLYAAPILTFKRVIKKGSVEEYSC-----IPYILTLFSSLTYTWYGLP 238
           +T  ++G  VC  +    +L+ +R  +    + + C     IP  +   +S T    GLP
Sbjct: 76  LTQPVLG--VCLGMQMLTLLSKERGGQALDCQAHDCKCLGIIPTEIDELNSQTLKAEGLP 133

Query: 239 VVSSGWENWTLSGISSLGVLFESTFIGIYIWF 334
           +   GW   T S  S +  LF     G Y++F
Sbjct: 134 LPHMGWNQLTFSNPSQVHPLFAGVEAGSYVYF 165



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>P51794:CLCN4_RAT Chloride channel protein 4 - Rattus norvegicus (Rat)|
          Length = 747

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 373 YHHHDKFLFLSWCKP 329
           YHHHD  +F +WC+P
Sbjct: 479 YHHHDWIIFRNWCRP 493



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>Q61418:CLCN4_MOUSE Chloride channel protein 4 - Mus musculus (Mouse)|
          Length = 747

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 373 YHHHDKFLFLSWCKP 329
           YHHHD  +F +WC+P
Sbjct: 479 YHHHDWIIFRNWCRP 493



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>P51793:CLCN4_HUMAN Chloride channel protein 4 - Homo sapiens (Human)|
          Length = 760

 Score = 31.6 bits (70), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 373 YHHHDKFLFLSWCKP 329
           YHHHD  +F +WC+P
Sbjct: 492 YHHHDWIIFRNWCRP 506



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>Q10482:STM1_SCHPO Seven transmembrane protein 1 - Schizosaccharomyces pombe (Fission|
           yeast)
          Length = 271

 Score = 31.2 bits (69), Expect = 6.7
 Identities = 24/86 (27%), Positives = 41/86 (47%)
 Frame = +2

Query: 77  TTGIIGSVVCFLLYAAPILTFKRVIKKGSVEEYSCIPYILTLFSSLTYTWYGLPVVSSGW 256
           T G I SV   L + A I    +  K  S E  S I ++L    + +Y +  L   +S +
Sbjct: 180 TAGCISSV---LYFCARIPQIIKNHKAKSTEGLSIIFFVLASVGNTSYAFSILVFPASDY 236

Query: 257 ENWTLSGISSLGVLFESTFIGIYIWF 334
            N+T + +  +   F + F+ IYI++
Sbjct: 237 LNYTYANLPWILGAFSTIFLDIYIFY 262


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 183,109,378
Number of extensions: 4223263
Number of successful extensions: 9831
Number of sequences better than 10.0: 9
Number of HSP's gapped: 9830
Number of HSP's successfully gapped: 9
Length of query: 325
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 212
Effective length of database: 69,691,104
Effective search space: 14774514048
Effective search space used: 14774514048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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