ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf178n11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D08, full insert sequence Length = 1497 Score = 387 bits (195), Expect = e-104 Identities = 354/407 (86%) Strand = Plus / Plus Query: 552 tttgaagcaaagtcagctagagatggcgcgtggtatgatgttgctgcctttctgtcccac 611 |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || Sbjct: 493 tttgaagcaaagtcggctagagatggcgcatggtatgatgttgctgccttcctgtctcat 552 Query: 612 aggctctttgaaacgggggacccggaagtaaaagttcgattttctggatttggacctgag 671 || | || ||| | || || || |||||| |||||| ||||||||||||||| | ||| Sbjct: 553 cggttgttcgaatctggtgatccagaagtacgagttcgcttttctggatttggagccgag 612 Query: 672 gaggatgaatggattaatgttcgtaaatgtgtgaggctgcgttctcttccatgtgaatct 731 || ||||||||||| ||||| |||||||||||| ||| ||||||||||| |||||||| Sbjct: 613 gaagatgaatggataaatgtccgtaaatgtgtgcggcaacgttctcttccgtgtgaatca 672 Query: 732 gcagaatgtgttgctgtgcttcctggggatctcattctttgttttcaggaaggcaaagag 791 | |||||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| Sbjct: 673 actgaatgtgttgctgttcttcctggagacctcatactttgctttcaggaaggcaaagag 732 Query: 792 caggccctctattttgatgctcgtgttcttgatgctcaaaggcgcagacatgatgtaaga 851 ||||| || ||||| |||||| |||| ||||||||||||||||| |||||||||||| || Sbjct: 733 caggctctgtatttcgatgcttgtgtccttgatgctcaaaggcgtagacatgatgtacga 792 Query: 852 gggtgccgctgcaggtttcttgttcgttatgatcatgatcactctgaggagattgttcct 911 ||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 793 gggtgtcgctgtagatttcttgttcgctacgatcatgatcactctgaggaaattgttcca 852 Query: 912 ctgaggaaggtatgccgtcgaccagaaactgatttcaggctccagat 958 |||||||||||||| || |||||||||||||| | |||||| ||||| Sbjct: 853 ctgaggaaggtatgtcgccgaccagaaactgactacaggcttcagat 899 Score = 250 bits (126), Expect = 1e-62 Identities = 254/296 (85%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 169 ggatggggcggccgccgagcagcgggggcccagcgttccggttcacgcacgcggaggtgg 228 ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 107 ggatggggcggccgccgagcacggggggcccggcgttccggttcacccaggcggaggtgg 166 Query: 229 cggagatggaggagcacctgcgtcacctcaacaacgccatcccgcagcgcagcgtcatcc 288 | |||||||||| | ||||| || |||||||||||||||||||| ||| |||||||| Sbjct: 167 ccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatcc 226 Query: 289 agggcctcgccgagaagttcaccgcctccgcctcccgcaccggcaagatccccgtccagt 348 ||| ||||||||| ||||||||| ||||| || ||||| |||||||| || |||||||| Sbjct: 227 aggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagc 286 Query: 349 acaagcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggaccccca 408 |||||||||||||||||||||||||||||||||||||||||| || |||||| | ||| Sbjct: 287 ccaagcaggtgtggaactggttccagaaccggaggtactcgcaccgctccaggagctcca 346 Query: 409 ggggcgcgccgccgc---cgcaggggaagatgctgcccacgggggccgaggagcac 461 ||||| | ||| ||| |||| |||||||||||||||||| |||| |||||| Sbjct: 347 ggggccccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcac 402 Score = 63.9 bits (32), Expect = 2e-06 Identities = 95/116 (81%) Strand = Plus / Plus Query: 1014 gagcagaaaccccaaaagccacacaagatgatggacgtgaacactgccgaggtgaccgtg 1073 ||||||||||||| ||||| ||||| |||||||| |||||||||| ||||| ||| || Sbjct: 979 gagcagaaacccccaaagcagcacaaaatgatggatgtgaacactgatgaggtaaccatg 1038 Query: 1074 gttcccaacccagatcaaggagggccatctgacaagccggctgctcccttaccagc 1129 ||| | |||| ||| |||| || |||| | | |||||| |||||| |||| ||||| Sbjct: 1039 gtttctaaccaagaccaagaagagccaacaggcaagcctgctgctaccttgccagc 1094
>dbj|AK073906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073M23, full insert sequence Length = 1655 Score = 373 bits (188), Expect = 1e-99 Identities = 341/392 (86%) Strand = Plus / Plus Query: 552 tttgaagcaaagtcagctagagatggcgcgtggtatgatgttgctgcctttctgtcccac 611 |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || Sbjct: 456 tttgaagcaaagtcggctagagatggcgcatggtatgatgttgctgccttcctgtctcat 515 Query: 612 aggctctttgaaacgggggacccggaagtaaaagttcgattttctggatttggacctgag 671 || | || ||| | || || || |||||| |||||| ||||||||||||||| | ||| Sbjct: 516 cggttgttcgaatctggtgatccagaagtacgagttcgcttttctggatttggagccgag 575 Query: 672 gaggatgaatggattaatgttcgtaaatgtgtgaggctgcgttctcttccatgtgaatct 731 || ||||||||||| ||||| |||||||||||| ||| ||||||||||| |||||||| Sbjct: 576 gaagatgaatggataaatgtccgtaaatgtgtgcggcaacgttctcttccgtgtgaatca 635 Query: 732 gcagaatgtgttgctgtgcttcctggggatctcattctttgttttcaggaaggcaaagag 791 | |||||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| Sbjct: 636 actgaatgtgttgctgttcttcctggagacctcatactttgctttcaggaaggcaaagag 695 Query: 792 caggccctctattttgatgctcgtgttcttgatgctcaaaggcgcagacatgatgtaaga 851 ||||| || ||||| ||| || |||| ||||||||||||||||| |||||||||||| || Sbjct: 696 caggctctgtatttcgatacttgtgtccttgatgctcaaaggcgtagacatgatgtacga 755 Query: 852 gggtgccgctgcaggtttcttgttcgttatgatcatgatcactctgaggagattgttcct 911 ||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||||| Sbjct: 756 gggtgtcgctgtagatttcttgttcgctacgatcatgatcactctgaggaaattgttcca 815 Query: 912 ctgaggaaggtatgccgtcgaccagaaactga 943 |||||||||||||| || |||||||||||||| Sbjct: 816 ctgaggaaggtatgtcgccgaccagaaactga 847 Score = 242 bits (122), Expect = 3e-60 Identities = 253/296 (85%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 169 ggatggggcggccgccgagcagcgggggcccagcgttccggttcacgcacgcggaggtgg 228 ||||||||||||| ||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 70 ggatggggcggccaccgagcacggggggcccggcgttccggttcacccaggcggaggtgg 129 Query: 229 cggagatggaggagcacctgcgtcacctcaacaacgccatcccgcagcgcagcgtcatcc 288 | |||||||||| | ||||| || |||||||||||||||||||| ||| |||||||| Sbjct: 130 ccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatcc 189 Query: 289 agggcctcgccgagaagttcaccgcctccgcctcccgcaccggcaagatccccgtccagt 348 ||| ||||||||| ||||||||| ||||| || ||||| |||||||| || |||||||| Sbjct: 190 aggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagc 249 Query: 349 acaagcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggaccccca 408 |||||||||||||||||||||||||||||||||||||||||| || |||||| | ||| Sbjct: 250 ccaagcaggtgtggaactggttccagaaccggaggtactcgcaccgctccaggagctcca 309 Query: 409 ggggcgcgccgccgc---cgcaggggaagatgctgcccacgggggccgaggagcac 461 ||||| | ||| ||| |||| |||||||||||||||||| |||| |||||| Sbjct: 310 ggggccccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcac 365 Score = 63.9 bits (32), Expect = 2e-06 Identities = 95/116 (81%) Strand = Plus / Plus Query: 1014 gagcagaaaccccaaaagccacacaagatgatggacgtgaacactgccgaggtgaccgtg 1073 ||||||||||||| ||||| ||||| |||||||| |||||||||| ||||| ||| || Sbjct: 942 gagcagaaacccccaaagcagcacaaaatgatggatgtgaacactgatgaggtaaccatg 1001 Query: 1074 gttcccaacccagatcaaggagggccatctgacaagccggctgctcccttaccagc 1129 ||| | |||| ||| |||| || |||| | | |||||| |||||| |||| ||||| Sbjct: 1002 gtttctaaccaagaccaagaagagccaacaggcaagcctgctgctaccttgccagc 1057
>gb|BT018465.1| Zea mays clone EL01N0417D07.d mRNA sequence Length = 1359 Score = 355 bits (179), Expect = 3e-94 Identities = 368/431 (85%) Strand = Plus / Plus Query: 549 gagtttgaagcaaagtcagctagagatggcgcgtggtatgatgttgctgcctttctgtcc 608 |||||||| || ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct: 481 gagtttgaggccaagtcagctcgtgatggtgcatggtatgatgttgctgcctttctgtca 540 Query: 609 cacaggctctttgaaacgggggacccggaagtaaaagttcgattttctggatttggacct 668 || ||| | |||||| | || ||||||||||| ||||| |||||||||||||| | Sbjct: 541 cataggttgtttgaatccggtgacccggaagtgcgggttcgtttttctggatttggggca 600 Query: 669 gaggaggatgaatggattaatgttcgtaaatgtgtgaggctgcgttctcttccatgtgaa 728 ||||||||||||||||| |||||||| ||||||||| | | ||||||||||| ||||| Sbjct: 601 gaggaggatgaatggatcaatgttcgcaaatgtgtgcgacaacgttctcttccctgtgag 660 Query: 729 tctgcagaatgtgttgctgtgcttcctggggatctcattctttgttttcaggaaggcaaa 788 | ||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct: 661 gccacagaatgcgttgctgtgcttcctggggacctcattctttgttttcaggaagataaa 720 Query: 789 gagcaggccctctattttgatgctcgtgttcttgatgctcaaaggcgcagacatgatgta 848 |||||||| |||||||||||||||||||| ||||||||||||||| | || |||||||| Sbjct: 721 gagcaggctctctattttgatgctcgtgtccttgatgctcaaaggagaaggcatgatgtt 780 Query: 849 agagggtgccgctgcaggtttcttgttcgttatgatcatgatcactctgaggagattgtt 908 ||||| ||||| || || ||||||||||| ||||||||||| |||||||| |||||| Sbjct: 781 agaggttgccgttgtagatttcttgttcgctatgatcatgactcttctgaggaaattgtt 840 Query: 909 cctctgaggaaggtatgccgtcgaccagaaactgatttcaggctccagatcttgcacgcc 968 || ||||||||||| ||||| |||||||||||||| | |||||| ||||| |||| || Sbjct: 841 ccactgaggaaggtgtgccgccgaccagaaactgactacaggcttcagattctgcatgct 900 Query: 969 tctagagcggc 979 |||||||||| Sbjct: 901 gctagagcggc 911 Score = 67.9 bits (34), Expect = 1e-07 Identities = 55/62 (88%) Strand = Plus / Plus Query: 350 caagcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggacccccag 409 ||||||||||||||||||||| |||||| || | |||||||| ||||||| |||| |||| Sbjct: 258 caagcaggtgtggaactggtttcagaacaggcgttactcgcatcgggccaagaccaccag 317 Query: 410 gg 411 || Sbjct: 318 gg 319
>ref|NM_001064197.1| Oryza sativa (japonica cultivar-group) Os06g0485100 (Os06g0485100) mRNA, complete cds Length = 3375 Score = 341 bits (172), Expect = 4e-90 Identities = 325/376 (86%) Strand = Plus / Plus Query: 583 ggtatgatgttgctgcctttctgtcccacaggctctttgaaacgggggacccggaagtaa 642 ||||||||||||||||||| ||||| || || | || ||| | || || || |||||| Sbjct: 2182 ggtatgatgttgctgccttcctgtctcatcggttgttcgaatctggtgatccagaagtac 2241 Query: 643 aagttcgattttctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtg 702 |||||| ||||||||||||||| | ||||| ||||||||||| ||||| |||||||||| Sbjct: 2242 gagttcgcttttctggatttggagccgaggaagatgaatggataaatgtccgtaaatgtg 2301 Query: 703 tgaggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatc 762 || ||| ||||||||||| |||||||| | |||||||||||||| |||||||| || | Sbjct: 2302 tgcggcaacgttctcttccgtgtgaatcaactgaatgtgttgctgttcttcctggagacc 2361 Query: 763 tcattctttgttttcaggaaggcaaagagcaggccctctattttgatgctcgtgttcttg 822 |||| ||||| ||||||||||||||||||||||| || ||||| |||||| |||| |||| Sbjct: 2362 tcatactttgctttcaggaaggcaaagagcaggctctgtatttcgatgcttgtgtccttg 2421 Query: 823 atgctcaaaggcgcagacatgatgtaagagggtgccgctgcaggtttcttgttcgttatg 882 ||||||||||||| |||||||||||| ||||||| ||||| || ||||||||||| || | Sbjct: 2422 atgctcaaaggcgtagacatgatgtacgagggtgtcgctgtagatttcttgttcgctacg 2481 Query: 883 atcatgatcactctgaggagattgttcctctgaggaaggtatgccgtcgaccagaaactg 942 ||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||| Sbjct: 2482 atcatgatcactctgaggaaattgttccactgaggaaggtatgtcgccgaccagaaactg 2541 Query: 943 atttcaggctccagat 958 | | |||||| ||||| Sbjct: 2542 actacaggcttcagat 2557 Score = 250 bits (126), Expect = 1e-62 Identities = 254/296 (85%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 169 ggatggggcggccgccgagcagcgggggcccagcgttccggttcacgcacgcggaggtgg 228 ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 73 ggatggggcggccgccgagcacggggggcccggcgttccggttcacccaggcggaggtgg 132 Query: 229 cggagatggaggagcacctgcgtcacctcaacaacgccatcccgcagcgcagcgtcatcc 288 | |||||||||| | ||||| || |||||||||||||||||||| ||| |||||||| Sbjct: 133 ccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatcc 192 Query: 289 agggcctcgccgagaagttcaccgcctccgcctcccgcaccggcaagatccccgtccagt 348 ||| ||||||||| ||||||||| ||||| || ||||| |||||||| || |||||||| Sbjct: 193 aggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagc 252 Query: 349 acaagcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggaccccca 408 |||||||||||||||||||||||||||||||||||||||||| || |||||| | ||| Sbjct: 253 ccaagcaggtgtggaactggttccagaaccggaggtactcgcaccgctccaggagctcca 312 Query: 409 ggggcgcgccgccgc---cgcaggggaagatgctgcccacgggggccgaggagcac 461 ||||| | ||| ||| |||| |||||||||||||||||| |||| |||||| Sbjct: 313 ggggccccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcac 368 Score = 63.9 bits (32), Expect = 2e-06 Identities = 95/116 (81%) Strand = Plus / Plus Query: 1014 gagcagaaaccccaaaagccacacaagatgatggacgtgaacactgccgaggtgaccgtg 1073 ||||||||||||| ||||| ||||| |||||||| |||||||||| ||||| ||| || Sbjct: 2637 gagcagaaacccccaaagcagcacaaaatgatggatgtgaacactgatgaggtaaccatg 2696 Query: 1074 gttcccaacccagatcaaggagggccatctgacaagccggctgctcccttaccagc 1129 ||| | |||| ||| |||| || |||| | | |||||| |||||| |||| ||||| Sbjct: 2697 gtttctaaccaagaccaagaagagccaacaggcaagcctgctgctaccttgccagc 2752 Score = 56.0 bits (28), Expect = 4e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 552 tttgaagcaaagtcagctagagatggcgcgtggtat 587 |||||||||||||| |||||||||||||| |||||| Sbjct: 459 tttgaagcaaagtcggctagagatggcgcatggtat 494
>dbj|AK068560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151L16, full insert sequence Length = 3376 Score = 341 bits (172), Expect = 4e-90 Identities = 325/376 (86%) Strand = Plus / Plus Query: 583 ggtatgatgttgctgcctttctgtcccacaggctctttgaaacgggggacccggaagtaa 642 ||||||||||||||||||| ||||| || || | || ||| | || || || |||||| Sbjct: 2183 ggtatgatgttgctgccttcctgtctcatcggttgttcgaatctggtgatccagaagtac 2242 Query: 643 aagttcgattttctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtg 702 |||||| ||||||||||||||| | ||||| ||||||||||| ||||| |||||||||| Sbjct: 2243 gagttcgcttttctggatttggagccgaggaagatgaatggataaatgtccgtaaatgtg 2302 Query: 703 tgaggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatc 762 || ||| ||||||||||| |||||||| | |||||||||||||| |||||||| || | Sbjct: 2303 tgcggcaacgttctcttccgtgtgaatcaactgaatgtgttgctgttcttcctggagacc 2362 Query: 763 tcattctttgttttcaggaaggcaaagagcaggccctctattttgatgctcgtgttcttg 822 |||| ||||| ||||||||||||||||||||||| || ||||| |||||| |||| |||| Sbjct: 2363 tcatactttgctttcaggaaggcaaagagcaggctctgtatttcgatgcttgtgtccttg 2422 Query: 823 atgctcaaaggcgcagacatgatgtaagagggtgccgctgcaggtttcttgttcgttatg 882 ||||||||||||| |||||||||||| ||||||| ||||| || ||||||||||| || | Sbjct: 2423 atgctcaaaggcgtagacatgatgtacgagggtgtcgctgtagatttcttgttcgctacg 2482 Query: 883 atcatgatcactctgaggagattgttcctctgaggaaggtatgccgtcgaccagaaactg 942 ||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||| Sbjct: 2483 atcatgatcactctgaggaaattgttccactgaggaaggtatgtcgccgaccagaaactg 2542 Query: 943 atttcaggctccagat 958 | | |||||| ||||| Sbjct: 2543 actacaggcttcagat 2558 Score = 250 bits (126), Expect = 1e-62 Identities = 254/296 (85%), Gaps = 3/296 (1%) Strand = Plus / Plus Query: 169 ggatggggcggccgccgagcagcgggggcccagcgttccggttcacgcacgcggaggtgg 228 ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 74 ggatggggcggccgccgagcacggggggcccggcgttccggttcacccaggcggaggtgg 133 Query: 229 cggagatggaggagcacctgcgtcacctcaacaacgccatcccgcagcgcagcgtcatcc 288 | |||||||||| | ||||| || |||||||||||||||||||| ||| |||||||| Sbjct: 134 ccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatcc 193 Query: 289 agggcctcgccgagaagttcaccgcctccgcctcccgcaccggcaagatccccgtccagt 348 ||| ||||||||| ||||||||| ||||| || ||||| |||||||| || |||||||| Sbjct: 194 aggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagc 253 Query: 349 acaagcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggaccccca 408 |||||||||||||||||||||||||||||||||||||||||| || |||||| | ||| Sbjct: 254 ccaagcaggtgtggaactggttccagaaccggaggtactcgcaccgctccaggagctcca 313 Query: 409 ggggcgcgccgccgc---cgcaggggaagatgctgcccacgggggccgaggagcac 461 ||||| | ||| ||| |||| |||||||||||||||||| |||| |||||| Sbjct: 314 ggggccccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcac 369 Score = 63.9 bits (32), Expect = 2e-06 Identities = 95/116 (81%) Strand = Plus / Plus Query: 1014 gagcagaaaccccaaaagccacacaagatgatggacgtgaacactgccgaggtgaccgtg 1073 ||||||||||||| ||||| ||||| |||||||| |||||||||| ||||| ||| || Sbjct: 2638 gagcagaaacccccaaagcagcacaaaatgatggatgtgaacactgatgaggtaaccatg 2697 Query: 1074 gttcccaacccagatcaaggagggccatctgacaagccggctgctcccttaccagc 1129 ||| | |||| ||| |||| || |||| | | |||||| |||||| |||| ||||| Sbjct: 2698 gtttctaaccaagaccaagaagagccaacaggcaagcctgctgctaccttgccagc 2753 Score = 56.0 bits (28), Expect = 4e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 552 tttgaagcaaagtcagctagagatggcgcgtggtat 587 |||||||||||||| |||||||||||||| |||||| Sbjct: 460 tttgaagcaaagtcggctagagatggcgcatggtat 495
>ref|NM_001064192.1| Oryza sativa (japonica cultivar-group) Os06g0483900 (Os06g0483900) mRNA, partial cds Length = 2069 Score = 212 bits (107), Expect = 3e-51 Identities = 251/299 (83%) Strand = Plus / Plus Query: 645 gttcgattttctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtgtg 704 ||||||||||||||||||||| || ||| || ||||||||| |||| |||| ||||||| Sbjct: 1441 gttcgattttctggatttggagctagggacgacgaatggattgatgtccgtacatgtgtg 1500 Query: 705 aggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctc 764 ||| ||||||| |||||||| || | ||||||| ||||| ||||||||||| | Sbjct: 1501 cggcaacgttctcatccatgtgtgtcaaccgaatgtgccgctgttcttcctggggaccaa 1560 Query: 765 attctttgttttcaggaaggcaaagagcaggccctctattttgatgctcgtgttcttgat 824 |||||||| || |||||||||||| | ||||| || ||||||||||||| ||| |||||| Sbjct: 1561 attctttgcttccaggaaggcaaacatcaggctctgtattttgatgctcatgtccttgat 1620 Query: 825 gctcaaaggcgcagacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgat 884 ||||||| ||| || ||||||| |||||| || || ||||| ||||||||| | |||||| Sbjct: 1621 gctcaaaagcgtaggcatgatgcaagaggttgtcgttgcagatttcttgtttgctatgat 1680 Query: 885 catgatcactctgaggagattgttcctctgaggaaggtatgccgtcgaccagaaactga 943 |||||| |||||||||| |||||||| ||||||||| | || ||||| ||||||||||| Sbjct: 1681 catgatgactctgaggaaattgttccactgaggaagatgtgtcgtcggccagaaactga 1739 Score = 85.7 bits (43), Expect = 4e-13 Identities = 127/155 (81%) Strand = Plus / Plus Query: 204 ttccggttcacgcacgcggaggtggcggagatggaggagcacctgcgtcacctcaacaac 263 |||||||||||||| | ||||||||| ||||||||| || |||||| || ||||||||| Sbjct: 944 ttccggttcacgcaggaggaggtggccgagatggagtcgctcctgcggcatctcaacaac 1003 Query: 264 gccatcccgcagcgcagcgtcatccagggcctcgccgagaagttcaccgcctccgcctcc 323 | ||||||| | || | | |||||| ||||||||| | |||||||||||||||| | Sbjct: 1004 ggcatcccggacggctccttgatccagtccctcgccgacaggttcaccgcctccgccgcg 1063 Query: 324 cgcaccggcaagatccccgtccagtacaagcaggt 358 ||| |||||||| || ||||| || ||||||||| Sbjct: 1064 cgcgccggcaaggtcggcgtccggtccaagcaggt 1098 Score = 69.9 bits (35), Expect = 3e-08 Identities = 56/63 (88%) Strand = Plus / Plus Query: 548 cgagtttgaagcaaagtcagctagagatggcgcgtggtatgatgttgctgcctttctgtc 607 ||||||||| |||||||| | ||||||||| || |||||||||||||||||||| || || Sbjct: 1344 cgagtttgaggcaaagtccgttagagatggtgcatggtatgatgttgctgccttcctttc 1403 Query: 608 cca 610 ||| Sbjct: 1404 cca 1406 Score = 63.9 bits (32), Expect = 2e-06 Identities = 38/40 (95%) Strand = Plus / Plus Query: 355 aggtgtggaactggttccagaaccggaggtactcgcagcg 394 |||||||| |||||||||||||||||| |||||||||||| Sbjct: 1193 aggtgtggtactggttccagaaccggaagtactcgcagcg 1232
>dbj|AK099692.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N05, full insert sequence Length = 2071 Score = 212 bits (107), Expect = 3e-51 Identities = 251/299 (83%) Strand = Plus / Plus Query: 645 gttcgattttctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtgtg 704 ||||||||||||||||||||| || ||| || ||||||||| |||| |||| ||||||| Sbjct: 1443 gttcgattttctggatttggagctagggacgacgaatggattgatgtccgtacatgtgtg 1502 Query: 705 aggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctc 764 ||| ||||||| |||||||| || | ||||||| ||||| ||||||||||| | Sbjct: 1503 cggcaacgttctcatccatgtgtgtcaaccgaatgtgccgctgttcttcctggggaccaa 1562 Query: 765 attctttgttttcaggaaggcaaagagcaggccctctattttgatgctcgtgttcttgat 824 |||||||| || |||||||||||| | ||||| || ||||||||||||| ||| |||||| Sbjct: 1563 attctttgcttccaggaaggcaaacatcaggctctgtattttgatgctcatgtccttgat 1622 Query: 825 gctcaaaggcgcagacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgat 884 ||||||| ||| || ||||||| |||||| || || ||||| ||||||||| | |||||| Sbjct: 1623 gctcaaaagcgtaggcatgatgcaagaggttgtcgttgcagatttcttgtttgctatgat 1682 Query: 885 catgatcactctgaggagattgttcctctgaggaaggtatgccgtcgaccagaaactga 943 |||||| |||||||||| |||||||| ||||||||| | || ||||| ||||||||||| Sbjct: 1683 catgatgactctgaggaaattgttccactgaggaagatgtgtcgtcggccagaaactga 1741 Score = 77.8 bits (39), Expect = 1e-10 Identities = 126/155 (81%) Strand = Plus / Plus Query: 204 ttccggttcacgcacgcggaggtggcggagatggaggagcacctgcgtcacctcaacaac 263 |||||||||||||| | ||||||||| ||||||||| || |||||| || |||||| || Sbjct: 946 ttccggttcacgcaggaggaggtggccgagatggagtcgctcctgcggcatctcaacgac 1005 Query: 264 gccatcccgcagcgcagcgtcatccagggcctcgccgagaagttcaccgcctccgcctcc 323 | ||||||| | || | | |||||| ||||||||| | |||||||||||||||| | Sbjct: 1006 ggcatcccggacggctccttgatccagtccctcgccgacaggttcaccgcctccgccgcg 1065 Query: 324 cgcaccggcaagatccccgtccagtacaagcaggt 358 ||| |||||||| || ||||| || ||||||||| Sbjct: 1066 cgcgccggcaaggtcggcgtccggtccaagcaggt 1100 Score = 69.9 bits (35), Expect = 3e-08 Identities = 56/63 (88%) Strand = Plus / Plus Query: 548 cgagtttgaagcaaagtcagctagagatggcgcgtggtatgatgttgctgcctttctgtc 607 ||||||||| |||||||| | ||||||||| || |||||||||||||||||||| || || Sbjct: 1346 cgagtttgaggcaaagtccgttagagatggtgcatggtatgatgttgctgccttcctttc 1405 Query: 608 cca 610 ||| Sbjct: 1406 cca 1408 Score = 63.9 bits (32), Expect = 2e-06 Identities = 38/40 (95%) Strand = Plus / Plus Query: 355 aggtgtggaactggttccagaaccggaggtactcgcagcg 394 |||||||| |||||||||||||||||| |||||||||||| Sbjct: 1195 aggtgtggtactggttccagaaccggaagtactcgcagcg 1234
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 178 bits (90), Expect = 4e-41 Identities = 165/190 (86%) Strand = Plus / Minus Query: 169 ggatggggcggccgccgagcagcgggggcccagcgttccggttcacgcacgcggaggtgg 228 ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 16325038 ggatggggcggccgccgagcacggggggcccggcgttccggttcacccaggcggaggtgg 16324979 Query: 229 cggagatggaggagcacctgcgtcacctcaacaacgccatcccgcagcgcagcgtcatcc 288 | |||||||||| | ||||| || |||||||||||||||||||| ||| |||||||| Sbjct: 16324978 ccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatcc 16324919 Query: 289 agggcctcgccgagaagttcaccgcctccgcctcccgcaccggcaagatccccgtccagt 348 ||| ||||||||| ||||||||| ||||| || ||||| |||||||| || |||||||| Sbjct: 16324918 aggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagc 16324859 Query: 349 acaagcaggt 358 ||||||||| Sbjct: 16324858 ccaagcaggt 16324849 Score = 151 bits (76), Expect = 9e-33 Identities = 112/124 (90%) Strand = Plus / Minus Query: 777 caggaaggcaaagagcaggccctctattttgatgctcgtgttcttgatgctcaaaggcgc 836 |||||||||||||||||||| || ||||| |||||| |||| ||||||||||||||||| Sbjct: 16321527 caggaaggcaaagagcaggctctgtatttcgatgcttgtgtccttgatgctcaaaggcgt 16321468 Query: 837 agacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgatcatgatcactct 896 |||||||||||| ||||||| ||||| || ||||||||||| || ||||||||||||||| Sbjct: 16321467 agacatgatgtacgagggtgtcgctgtagatttcttgttcgctacgatcatgatcactct 16321408 Query: 897 gagg 900 |||| Sbjct: 16321407 gagg 16321404 Score = 131 bits (66), Expect = 8e-27 Identities = 126/146 (86%) Strand = Plus / Minus Query: 635 ggaagtaaaagttcgattttctggatttggacctgaggaggatgaatggattaatgttcg 694 ||||||| |||||| ||||||||||||||| | ||||| ||||||||||| ||||| || Sbjct: 16322073 ggaagtacgagttcgcttttctggatttggagccgaggaagatgaatggataaatgtccg 16322014 Query: 695 taaatgtgtgaggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcc 754 |||||||||| ||| ||||||||||| |||||||| | |||||||||||||| ||||| Sbjct: 16322013 taaatgtgtgcggcaacgttctcttccgtgtgaatcaactgaatgtgttgctgttcttcc 16321954 Query: 755 tggggatctcattctttgttttcagg 780 ||| || ||||| ||||| ||||||| Sbjct: 16321953 tggagacctcatactttgctttcagg 16321928 Score = 111 bits (56), Expect = 7e-21 Identities = 107/124 (86%) Strand = Plus / Minus Query: 777 caggaaggcaaagagcaggccctctattttgatgctcgtgttcttgatgctcaaaggcgc 836 |||||||||||| | ||||| || ||||||||||||| ||| ||||||||||||| ||| Sbjct: 16255198 caggaaggcaaacatcaggctctgtattttgatgctcatgtccttgatgctcaaaagcgt 16255139 Query: 837 agacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgatcatgatcactct 896 || ||||||| |||||| || || ||||| ||||||||| | |||||||||||| ||||| Sbjct: 16255138 aggcatgatgcaagaggttgtcgttgcagatttcttgtttgctatgatcatgatgactct 16255079 Query: 897 gagg 900 |||| Sbjct: 16255078 gagg 16255075 Score = 85.7 bits (43), Expect = 4e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 204 ttccggttcacgcacgcggaggtggcggagatggaggagcacctgcgtcacctcaacaac 263 |||||||||||||| | ||||||||| ||||||||| || |||||| || ||||||||| Sbjct: 16261144 ttccggttcacgcaggaggaggtggccgagatggagtcgctcctgcggcatctcaacaac 16261085 Query: 264 gccatcccgcagcgcagcgtcatccagggcctcgccgagaagttcaccgcctccgcctcc 323 | ||||||| | || | | |||||| ||||||||| | |||||||||||||||| | Sbjct: 16261084 ggcatcccggacggctccttgatccagtccctcgccgacaggttcaccgcctccgccgcg 16261025 Query: 324 cgcaccggcaagatccccgtccagtacaagcaggt 358 ||| |||||||| || ||||| || ||||||||| Sbjct: 16261024 cgcgccggcaaggtcggcgtccggtccaagcaggt 16260990 Score = 83.8 bits (42), Expect = 2e-12 Identities = 95/112 (84%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 353 gcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggacccccagggg 412 ||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||| Sbjct: 16324760 gcaggtgtggaactggttccagaaccggaggtactcgcaccgctccaggagctccagggg 16324701 Query: 413 cgcgccgccgc---cgcaggggaagatgctgcccacgggggccgaggagcac 461 | | ||| ||| |||| |||||||||||||||||| |||| |||||| Sbjct: 16324700 ccccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcac 16324649 Score = 71.9 bits (36), Expect = 6e-09 Identities = 96/116 (82%) Strand = Plus / Minus Query: 645 gttcgattttctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtgtg 704 ||||||||||||||||||||| || ||| || ||||||||| |||| |||| ||||||| Sbjct: 16255886 gttcgattttctggatttggagctagggacgacgaatggattgatgtccgtacatgtgtg 16255827 Query: 705 aggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcctgggga 760 ||| ||||||| |||||||| || | ||||||| ||||| ||||||||||| Sbjct: 16255826 cggcaacgttctcatccatgtgtgtcaaccgaatgtgccgctgttcttcctgggga 16255771 Score = 65.9 bits (33), Expect = 4e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 898 aggagattgttcctctgaggaaggtatgccgtcgaccagaaactgatttcaggctccaga 957 |||| |||||||| |||||||||||||| || |||||||||||||| | |||||| |||| Sbjct: 16320841 aggaaattgttccactgaggaaggtatgtcgccgaccagaaactgactacaggcttcaga 16320782 Query: 958 t 958 | Sbjct: 16320781 t 16320781 Score = 63.9 bits (32), Expect = 2e-06 Identities = 38/40 (95%) Strand = Plus / Minus Query: 355 aggtgtggaactggttccagaaccggaggtactcgcagcg 394 |||||||| |||||||||||||||||| |||||||||||| Sbjct: 16260895 aggtgtggtactggttccagaaccggaagtactcgcagcg 16260856 Score = 63.9 bits (32), Expect = 2e-06 Identities = 95/116 (81%) Strand = Plus / Minus Query: 1014 gagcagaaaccccaaaagccacacaagatgatggacgtgaacactgccgaggtgaccgtg 1073 ||||||||||||| ||||| ||||| |||||||| |||||||||| ||||| ||| || Sbjct: 16320701 gagcagaaacccccaaagcagcacaaaatgatggatgtgaacactgatgaggtaaccatg 16320642 Query: 1074 gttcccaacccagatcaaggagggccatctgacaagccggctgctcccttaccagc 1129 ||| | |||| ||| |||| || |||| | | |||||| |||||| |||| ||||| Sbjct: 16320641 gtttctaaccaagaccaagaagagccaacaggcaagcctgctgctaccttgccagc 16320586 Score = 56.0 bits (28), Expect = 4e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 552 tttgaagcaaagtcagctagagatggcgcgtggtat 587 |||||||||||||| |||||||||||||| |||||| Sbjct: 16324268 tttgaagcaaagtcggctagagatggcgcatggtat 16324233 Score = 44.1 bits (22), Expect = 1.4 Identities = 40/46 (86%) Strand = Plus / Minus Query: 898 aggagattgttcctctgaggaaggtatgccgtcgaccagaaactga 943 |||| |||||||| ||||||||| | || ||||| ||||||||||| Sbjct: 16253843 aggaaattgttccactgaggaagatgtgtcgtcggccagaaactga 16253798 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 583 ggtatgatgttgctgcctttctgtc 607 ||||||||||||||||||| ||||| Sbjct: 16322545 ggtatgatgttgctgccttcctgtc 16322521
>dbj|AP004012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1568_D07 Length = 83857 Score = 178 bits (90), Expect = 4e-41 Identities = 165/190 (86%) Strand = Plus / Minus Query: 169 ggatggggcggccgccgagcagcgggggcccagcgttccggttcacgcacgcggaggtgg 228 ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 20139 ggatggggcggccgccgagcacggggggcccggcgttccggttcacccaggcggaggtgg 20080 Query: 229 cggagatggaggagcacctgcgtcacctcaacaacgccatcccgcagcgcagcgtcatcc 288 | |||||||||| | ||||| || |||||||||||||||||||| ||| |||||||| Sbjct: 20079 ccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatcc 20020 Query: 289 agggcctcgccgagaagttcaccgcctccgcctcccgcaccggcaagatccccgtccagt 348 ||| ||||||||| ||||||||| ||||| || ||||| |||||||| || |||||||| Sbjct: 20019 aggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagc 19960 Query: 349 acaagcaggt 358 ||||||||| Sbjct: 19959 ccaagcaggt 19950 Score = 151 bits (76), Expect = 9e-33 Identities = 112/124 (90%) Strand = Plus / Minus Query: 777 caggaaggcaaagagcaggccctctattttgatgctcgtgttcttgatgctcaaaggcgc 836 |||||||||||||||||||| || ||||| |||||| |||| ||||||||||||||||| Sbjct: 16628 caggaaggcaaagagcaggctctgtatttcgatgcttgtgtccttgatgctcaaaggcgt 16569 Query: 837 agacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgatcatgatcactct 896 |||||||||||| ||||||| ||||| || ||||||||||| || ||||||||||||||| Sbjct: 16568 agacatgatgtacgagggtgtcgctgtagatttcttgttcgctacgatcatgatcactct 16509 Query: 897 gagg 900 |||| Sbjct: 16508 gagg 16505 Score = 131 bits (66), Expect = 8e-27 Identities = 126/146 (86%) Strand = Plus / Minus Query: 635 ggaagtaaaagttcgattttctggatttggacctgaggaggatgaatggattaatgttcg 694 ||||||| |||||| ||||||||||||||| | ||||| ||||||||||| ||||| || Sbjct: 17174 ggaagtacgagttcgcttttctggatttggagccgaggaagatgaatggataaatgtccg 17115 Query: 695 taaatgtgtgaggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcc 754 |||||||||| ||| ||||||||||| |||||||| | |||||||||||||| ||||| Sbjct: 17114 taaatgtgtgcggcaacgttctcttccgtgtgaatcaactgaatgtgttgctgttcttcc 17055 Query: 755 tggggatctcattctttgttttcagg 780 ||| || ||||| ||||| ||||||| Sbjct: 17054 tggagacctcatactttgctttcagg 17029 Score = 83.8 bits (42), Expect = 2e-12 Identities = 95/112 (84%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 353 gcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggacccccagggg 412 ||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||| Sbjct: 19861 gcaggtgtggaactggttccagaaccggaggtactcgcaccgctccaggagctccagggg 19802 Query: 413 cgcgccgccgc---cgcaggggaagatgctgcccacgggggccgaggagcac 461 | | ||| ||| |||| |||||||||||||||||| |||| |||||| Sbjct: 19801 ccccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcac 19750 Score = 65.9 bits (33), Expect = 4e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 898 aggagattgttcctctgaggaaggtatgccgtcgaccagaaactgatttcaggctccaga 957 |||| |||||||| |||||||||||||| || |||||||||||||| | |||||| |||| Sbjct: 15942 aggaaattgttccactgaggaaggtatgtcgccgaccagaaactgactacaggcttcaga 15883 Query: 958 t 958 | Sbjct: 15882 t 15882 Score = 63.9 bits (32), Expect = 2e-06 Identities = 95/116 (81%) Strand = Plus / Minus Query: 1014 gagcagaaaccccaaaagccacacaagatgatggacgtgaacactgccgaggtgaccgtg 1073 ||||||||||||| ||||| ||||| |||||||| |||||||||| ||||| ||| || Sbjct: 15802 gagcagaaacccccaaagcagcacaaaatgatggatgtgaacactgatgaggtaaccatg 15743 Query: 1074 gttcccaacccagatcaaggagggccatctgacaagccggctgctcccttaccagc 1129 ||| | |||| ||| |||| || |||| | | |||||| |||||| |||| ||||| Sbjct: 15742 gtttctaaccaagaccaagaagagccaacaggcaagcctgctgctaccttgccagc 15687 Score = 56.0 bits (28), Expect = 4e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 552 tttgaagcaaagtcagctagagatggcgcgtggtat 587 |||||||||||||| |||||||||||||| |||||| Sbjct: 19369 tttgaagcaaagtcggctagagatggcgcatggtat 19334 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 583 ggtatgatgttgctgcctttctgtc 607 ||||||||||||||||||| ||||| Sbjct: 17646 ggtatgatgttgctgccttcctgtc 17622
>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0008F02 Length = 139655 Score = 178 bits (90), Expect = 4e-41 Identities = 165/190 (86%) Strand = Plus / Minus Query: 169 ggatggggcggccgccgagcagcgggggcccagcgttccggttcacgcacgcggaggtgg 228 ||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct: 1601 ggatggggcggccgccgagcacggggggcccggcgttccggttcacccaggcggaggtgg 1542 Query: 229 cggagatggaggagcacctgcgtcacctcaacaacgccatcccgcagcgcagcgtcatcc 288 | |||||||||| | ||||| || |||||||||||||||||||| ||| |||||||| Sbjct: 1541 ccgagatggaggcccgcctgcagcagctcaacaacgccatcccgcaccgctccgtcatcc 1482 Query: 289 agggcctcgccgagaagttcaccgcctccgcctcccgcaccggcaagatccccgtccagt 348 ||| ||||||||| ||||||||| ||||| || ||||| |||||||| || |||||||| Sbjct: 1481 aggccctcgccgacaagttcacctcctcccccgcccgctccggcaaggtcgccgtccagc 1422 Query: 349 acaagcaggt 358 ||||||||| Sbjct: 1421 ccaagcaggt 1412 Score = 83.8 bits (42), Expect = 2e-12 Identities = 95/112 (84%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 353 gcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggacccccagggg 412 ||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||| Sbjct: 1323 gcaggtgtggaactggttccagaaccggaggtactcgcaccgctccaggagctccagggg 1264 Query: 413 cgcgccgccgc---cgcaggggaagatgctgcccacgggggccgaggagcac 461 | | ||| ||| |||| |||||||||||||||||| |||| |||||| Sbjct: 1263 ccccccgacgctgatgcagaccaagatgctgcccacggggtccgacgagcac 1212 Score = 56.0 bits (28), Expect = 4e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 552 tttgaagcaaagtcagctagagatggcgcgtggtat 587 |||||||||||||| |||||||||||||| |||||| Sbjct: 831 tttgaagcaaagtcggctagagatggcgcatggtat 796
>dbj|AB236808.1| Trifolium pratense RNA for hypothetical protein, complete cds, clone: C2056 Length = 2102 Score = 167 bits (84), Expect = 1e-37 Identities = 222/268 (82%) Strand = Plus / Plus Query: 655 ctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtgtgaggctgcgtt 714 |||| |||||| | ||||| ||||||||||||||||| | ||| ||| |||| ||| | Sbjct: 1193 ctggttttggatccgaggaagatgaatggattaatgtgcaaaaaaatgtcaggccgcgct 1252 Query: 715 ctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgtt 774 |||||||||||||||| |||||||||| || ||||| ||||| |||||||| ||||||| Sbjct: 1253 ctcttccatgtgaatcatcagaatgtgtcgcagtgctccctggtgatctcatactttgtt 1312 Query: 775 ttcaggaaggcaaagagcaggccctctattttgatgctcgtgttcttgatgctcaaaggc 834 ||||||| || ||||| || || || || |||||||| | ||| |||||||||||||| | Sbjct: 1313 ttcaggagggtaaagaacaagctctttactttgatgcccatgtccttgatgctcaaagac 1372 Query: 835 gcagacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgatcatgatcact 894 | || |||||||||||||| || || || || ||| | ||||| |||||||| ||||| | Sbjct: 1373 ggaggcatgatgtaagaggttgtcgttgtagatttttggttcgctatgatcacgatcagt 1432 Query: 895 ctgaggagattgttcctctgaggaaggt 922 ||||||| ||||| || || |||||||| Sbjct: 1433 ctgaggaaattgtgccgcttaggaaggt 1460
>dbj|AP004742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026F02 Length = 132237 Score = 111 bits (56), Expect = 7e-21 Identities = 107/124 (86%) Strand = Plus / Minus Query: 777 caggaaggcaaagagcaggccctctattttgatgctcgtgttcttgatgctcaaaggcgc 836 |||||||||||| | ||||| || ||||||||||||| ||| ||||||||||||| ||| Sbjct: 80090 caggaaggcaaacatcaggctctgtattttgatgctcatgtccttgatgctcaaaagcgt 80031 Query: 837 agacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgatcatgatcactct 896 || ||||||| |||||| || || ||||| ||||||||| | |||||||||||| ||||| Sbjct: 80030 aggcatgatgcaagaggttgtcgttgcagatttcttgtttgctatgatcatgatgactct 79971 Query: 897 gagg 900 |||| Sbjct: 79970 gagg 79967 Score = 85.7 bits (43), Expect = 4e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 204 ttccggttcacgcacgcggaggtggcggagatggaggagcacctgcgtcacctcaacaac 263 |||||||||||||| | ||||||||| ||||||||| || |||||| || ||||||||| Sbjct: 86036 ttccggttcacgcaggaggaggtggccgagatggagtcgctcctgcggcatctcaacaac 85977 Query: 264 gccatcccgcagcgcagcgtcatccagggcctcgccgagaagttcaccgcctccgcctcc 323 | ||||||| | || | | |||||| ||||||||| | |||||||||||||||| | Sbjct: 85976 ggcatcccggacggctccttgatccagtccctcgccgacaggttcaccgcctccgccgcg 85917 Query: 324 cgcaccggcaagatccccgtccagtacaagcaggt 358 ||| |||||||| || ||||| || ||||||||| Sbjct: 85916 cgcgccggcaaggtcggcgtccggtccaagcaggt 85882 Score = 71.9 bits (36), Expect = 6e-09 Identities = 96/116 (82%) Strand = Plus / Minus Query: 645 gttcgattttctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtgtg 704 ||||||||||||||||||||| || ||| || ||||||||| |||| |||| ||||||| Sbjct: 80778 gttcgattttctggatttggagctagggacgacgaatggattgatgtccgtacatgtgtg 80719 Query: 705 aggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcctgggga 760 ||| ||||||| |||||||| || | ||||||| ||||| ||||||||||| Sbjct: 80718 cggcaacgttctcatccatgtgtgtcaaccgaatgtgccgctgttcttcctgggga 80663 Score = 63.9 bits (32), Expect = 2e-06 Identities = 38/40 (95%) Strand = Plus / Minus Query: 355 aggtgtggaactggttccagaaccggaggtactcgcagcg 394 |||||||| |||||||||||||||||| |||||||||||| Sbjct: 85787 aggtgtggtactggttccagaaccggaagtactcgcagcg 85748 Score = 44.1 bits (22), Expect = 1.4 Identities = 40/46 (86%) Strand = Plus / Minus Query: 898 aggagattgttcctctgaggaaggtatgccgtcgaccagaaactga 943 |||| |||||||| ||||||||| | || ||||| ||||||||||| Sbjct: 78735 aggaaattgttccactgaggaagatgtgtcgtcggccagaaactga 78690
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 111 bits (56), Expect = 7e-21 Identities = 107/124 (86%) Strand = Plus / Minus Query: 777 caggaaggcaaagagcaggccctctattttgatgctcgtgttcttgatgctcaaaggcgc 836 |||||||||||| | ||||| || ||||||||||||| ||| ||||||||||||| ||| Sbjct: 159991 caggaaggcaaacatcaggctctgtattttgatgctcatgtccttgatgctcaaaagcgt 159932 Query: 837 agacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgatcatgatcactct 896 || ||||||| |||||| || || ||||| ||||||||| | |||||||||||| ||||| Sbjct: 159931 aggcatgatgcaagaggttgtcgttgcagatttcttgtttgctatgatcatgatgactct 159872 Query: 897 gagg 900 |||| Sbjct: 159871 gagg 159868 Score = 71.9 bits (36), Expect = 6e-09 Identities = 96/116 (82%) Strand = Plus / Minus Query: 645 gttcgattttctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtgtg 704 ||||||||||||||||||||| || ||| || ||||||||| |||| |||| ||||||| Sbjct: 160679 gttcgattttctggatttggagctagggacgacgaatggattgatgtccgtacatgtgtg 160620 Query: 705 aggctgcgttctcttccatgtgaatctgcagaatgtgttgctgtgcttcctgggga 760 ||| ||||||| |||||||| || | ||||||| ||||| ||||||||||| Sbjct: 160619 cggcaacgttctcatccatgtgtgtcaaccgaatgtgccgctgttcttcctgggga 160564 Score = 44.1 bits (22), Expect = 1.4 Identities = 40/46 (86%) Strand = Plus / Minus Query: 898 aggagattgttcctctgaggaaggtatgccgtcgaccagaaactga 943 |||| |||||||| ||||||||| | || ||||| ||||||||||| Sbjct: 158636 aggaaattgttccactgaggaagatgtgtcgtcggccagaaactga 158591
>gb|AC144724.9| Medicago truncatula clone mth2-7g10, complete sequence Length = 106731 Score = 85.7 bits (43), Expect = 4e-13 Identities = 97/115 (84%) Strand = Plus / Plus Query: 786 aaagagcaggccctctattttgatgctcgtgttcttgatgctcaaaggcgcagacatgat 845 |||||||| ||||| || |||||||| | ||| |||||||||||||| || || |||||| Sbjct: 92780 aaagagcaagccctttactttgatgcccatgtccttgatgctcaaagacggaggcatgat 92839 Query: 846 gtaagagggtgccgctgcaggtttcttgttcgttatgatcatgatcactctgagg 900 |||||||| || ||||| || ||| | ||||| |||||||| ||||| ||||||| Sbjct: 92840 gtaagaggttgtcgctgtagatttttggttcgctatgatcacgatcaatctgagg 92894 Score = 83.8 bits (42), Expect = 2e-12 Identities = 105/126 (83%) Strand = Plus / Plus Query: 655 ctggatttggacctgaggaggatgaatggattaatgttcgtaaatgtgtgaggctgcgtt 714 |||| |||||| | ||||| ||||| |||||||| || || ||| ||| |||| ||| | Sbjct: 92544 ctggttttggatccgaggaagatgagtggattaacgtgcgaaaaaatgtcaggccgcgct 92603 Query: 715 ctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgtt 774 |||| ||||||||||| |||||||||| || ||||| ||||| |||||||| ||||||| Sbjct: 92604 ctctgccatgtgaatcatcagaatgtgtcgcagtgctccctggtgatctcatactttgtt 92663 Query: 775 ttcagg 780 |||||| Sbjct: 92664 ttcagg 92669
>dbj|AP006146.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34M22, TM0282, complete sequence Length = 107979 Score = 71.9 bits (36), Expect = 6e-09 Identities = 96/116 (82%) Strand = Plus / Plus Query: 777 caggaaggcaaagagcaggccctctattttgatgctcgtgttcttgatgctcaaaggcgc 836 |||||||| |||||||| || || || ||||| || | ||| |||||| ||||||| || Sbjct: 79423 caggaaggtaaagagcaagctctttactttgacgcccatgtccttgattctcaaagacga 79482 Query: 837 agacatgatgtaagagggtgccgctgcaggtttcttgttcgttatgatcatgatca 892 || |||||||||||||| || || || || ||| | |||||||||||||||||||| Sbjct: 79483 aggcatgatgtaagaggctgtcgttgtagatttttggttcgttatgatcatgatca 79538 Score = 50.1 bits (25), Expect = 0.023 Identities = 73/89 (82%) Strand = Plus / Plus Query: 804 tttgatgctcgtgttcttgatgctcaaaggcgcagacatgatgtaagagggtgccgctgc 863 |||||||| ||||| | |||| || |||| || || |||||||||||||| || || || Sbjct: 91030 tttgatgcccgtgtccgtgattctgaaagacggaggcatgatgtaagaggctgtcgttgt 91089 Query: 864 aggtttcttgttcgttatgatcatgatca 892 || ||| | ||||| |||||||||||||| Sbjct: 91090 agatttttggttcgctatgatcatgatca 91118 Score = 46.1 bits (23), Expect = 0.36 Identities = 56/67 (83%) Strand = Plus / Plus Query: 714 tctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgt 773 ||||| ||||||||||| | ||||||||||| || || ||||| ||||| || || ||| Sbjct: 79216 tctctaccatgtgaatcatctgaatgtgttgcagtcctccctggagatcttatactctgt 79275 Query: 774 tttcagg 780 ||||||| Sbjct: 79276 tttcagg 79282
>gb|AY104473.1| Zea mays PCO140607 mRNA sequence Length = 663 Score = 67.9 bits (34), Expect = 1e-07 Identities = 55/62 (88%) Strand = Plus / Plus Query: 350 caagcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggacccccag 409 ||||||||||||||||||||| |||||| || | |||||||| ||||||| |||| |||| Sbjct: 385 caagcaggtgtggaactggtttcagaacaggcgttactcgcatcgggccaagaccaccag 444 Query: 410 gg 411 || Sbjct: 445 gg 446 Score = 63.9 bits (32), Expect = 2e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 549 gagtttgaagcaaagtcagctagagatggcgcgtggtatgatgttgctgcctttct 604 |||||||| || ||||||||| | ||||| || ||||||||||||||||||||||| Sbjct: 608 gagtttgaggccaagtcagctcgtgatggtgcatggtatgatgttgctgcctttct 663 Score = 44.1 bits (22), Expect = 1.4 Identities = 43/50 (86%) Strand = Plus / Plus Query: 222 gaggtggcggagatggaggagcacctgcgtcacctcaacaacgccatccc 271 ||||||||||||||||||| || | ||| || |||||||||| |||||| Sbjct: 257 gaggtggcggagatggaggcgcgcttgctgcagctcaacaacggcatccc 306
>emb|BX824855.1|CNS0A6QX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH77ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1382 Score = 61.9 bits (31), Expect = 6e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 714 tctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgt 773 ||||| ||||||||| | ||||||||||||| || ||| |||| |||||| | |||||| Sbjct: 713 tctctcccatgtgaagcatcagaatgtgttgcagttcttgctggagatctcgtcctttgt 772 Query: 774 tttcaggaaggcaaagagcaggc 796 || |||||||| ||||| ||||| Sbjct: 773 ttccaggaaggaaaagatcaggc 795
>ref|NM_202604.1| Arabidopsis thaliana DNA binding / transcription factor (AT3G18380) mRNA, complete cds Length = 1434 Score = 58.0 bits (29), Expect = 1e-04 Identities = 65/77 (84%) Strand = Plus / Plus Query: 714 tctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgt 773 ||||| ||||||||| | ||||||||||||| || ||| |||| |||||| | |||||| Sbjct: 713 tctctcccatgtgaagcatcagaatgtgttgcagttcttgctggagatctcgtcctttgt 772 Query: 774 tttcaggaaggcaaaga 790 || |||||||| ||||| Sbjct: 773 ttccaggaaggaaaaga 789
>ref|NM_112723.2| Arabidopsis thaliana DNA binding / transcription factor (AT3G18380) mRNA, complete cds Length = 1451 Score = 58.0 bits (29), Expect = 1e-04 Identities = 65/77 (84%) Strand = Plus / Plus Query: 714 tctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgt 773 ||||| ||||||||| | ||||||||||||| || ||| |||| |||||| | |||||| Sbjct: 733 tctctcccatgtgaagcatcagaatgtgttgcagttcttgctggagatctcgtcctttgt 792 Query: 774 tttcaggaaggcaaaga 790 || |||||||| ||||| Sbjct: 793 ttccaggaaggaaaaga 809
>gb|AY093042.1| Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds Length = 1451 Score = 58.0 bits (29), Expect = 1e-04 Identities = 65/77 (84%) Strand = Plus / Plus Query: 714 tctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgt 773 ||||| ||||||||| | ||||||||||||| || ||| |||| |||||| | |||||| Sbjct: 733 tctctcccatgtgaagcatcagaatgtgttgcagttcttgctggagatctcgtcctttgt 792 Query: 774 tttcaggaaggcaaaga 790 || |||||||| ||||| Sbjct: 793 ttccaggaaggaaaaga 809
>gb|BT003428.1| Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds Length = 1276 Score = 58.0 bits (29), Expect = 1e-04 Identities = 65/77 (84%) Strand = Plus / Plus Query: 714 tctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgt 773 ||||| ||||||||| | ||||||||||||| || ||| |||| |||||| | |||||| Sbjct: 595 tctctcccatgtgaagcatcagaatgtgttgcagttcttgctggagatctcgtcctttgt 654 Query: 774 tttcaggaaggcaaaga 790 || |||||||| ||||| Sbjct: 655 ttccaggaaggaaaaga 671
>emb|BX824840.1|CNS0A6WH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH76ZF05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1348 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Plus Query: 720 ccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgttttcag 779 ||||||||| | ||||||||||||| || ||| |||| |||||| | |||||||| ||| Sbjct: 718 ccatgtgaagcatcagaatgtgttgcagttcttgctggagatctcgtcctttgtttccag 777 Query: 780 gaaggcaaaga 790 ||||| ||||| Sbjct: 778 gaaggaaaaga 788
>gb|AY109306.1| Zea mays PCO088756 mRNA sequence Length = 561 Score = 54.0 bits (27), Expect = 0.001 Identities = 57/67 (85%) Strand = Plus / Plus Query: 350 caagcaggtgtggaactggttccagaaccggaggtactcgcagcgggccaggacccccag 409 ||||||||||||||||||||| |||||| | ||||||| || ||||||| || ||||| Sbjct: 341 caagcaggtgtggaactggtttcagaacagacggtactcacaccgggccaaaactcccag 400 Query: 410 gggcgcg 416 || |||| Sbjct: 401 ggccgcg 407 Score = 52.0 bits (26), Expect = 0.006 Identities = 44/50 (88%) Strand = Plus / Plus Query: 222 gaggtggcggagatggaggagcacctgcgtcacctcaacaacgccatccc 271 ||||||||||||||||||| || ||||| || |||||||||| |||||| Sbjct: 213 gaggtggcggagatggaggcgcgcctgctgcagctcaacaacggcatccc 262
>dbj|AB026658.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24 Length = 88989 Score = 46.1 bits (23), Expect = 0.36 Identities = 56/67 (83%) Strand = Plus / Minus Query: 714 tctcttccatgtgaatctgcagaatgtgttgctgtgcttcctggggatctcattctttgt 773 ||||| ||||||||| | ||||||||||||| || ||| |||| |||||| | |||||| Sbjct: 29791 tctctcccatgtgaagcatcagaatgtgttgcagttcttgctggagatctcgtcctttgt 29732 Query: 774 tttcagg 780 || |||| Sbjct: 29731 ttccagg 29725
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 138 ccgcgccacccgcggcagcgcc 159 |||||||||||||||||||||| Sbjct: 4719238 ccgcgccacccgcggcagcgcc 4719259
>ref|NM_001070346.1| Oryza sativa (japonica cultivar-group) Os09g0540900 (Os09g0540900) mRNA, complete cds Length = 1725 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 gcgcgccgccgccgcaggggaa 433 |||||||||||||||||||||| Sbjct: 128 gcgcgccgccgccgcaggggaa 149
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 449 ggccgaggagcaccacccggcc 470 |||||||||||||||||||||| Sbjct: 2367153 ggccgaggagcaccacccggcc 2367132
>ref|XM_965771.1| PREDICTED: Tribolium castaneum similar to CG11059-PA, isoform A (LOC659467), mRNA Length = 3196 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Minus Query: 155 gcgccggaggaggaggatggggcggc 180 ||||||||||||||||||| |||||| Sbjct: 1338 gcgccggaggaggaggatgaggcggc 1313
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 403 cccccaggggcgcgccgccgcc 424 |||||||||||||||||||||| Sbjct: 437008 cccccaggggcgcgccgccgcc 437029
>emb|CT030592.1| Xenopus tropicalis finished cDNA, clone TNeu051i07 Length = 2754 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 365 ctggttccagaaccggaggtac 386 |||||||||||||||||||||| Sbjct: 681 ctggttccagaaccggaggtac 702
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 412 gcgcgccgccgccgcaggggaa 433 |||||||||||||||||||||| Sbjct: 21002693 gcgcgccgccgccgcaggggaa 21002672
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 138 ccgcgccacccgcggcagcgcc 159 |||||||||||||||||||||| Sbjct: 5429644 ccgcgccacccgcggcagcgcc 5429623
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 412 gcgcgccgccgccgcaggggaa 433 |||||||||||||||||||||| Sbjct: 94782 gcgcgccgccgccgcaggggaa 94761
>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0478E02 Length = 140715 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 412 gcgcgccgccgccgcaggggaa 433 |||||||||||||||||||||| Sbjct: 23993 gcgcgccgccgccgcaggggaa 23972
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 138 ccgcgccacccgcggcagcgcc 159 |||||||||||||||||||||| Sbjct: 4516562 ccgcgccacccgcggcagcgcc 4516541
>ref|XM_670343.1| Plasmodium berghei strain ANKA dimethyladenosine transferase, (PB000758.00.0) partial mRNA Length = 1089 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1190 tattccaaaagttgaagctgca 1211 |||||||||||||||||||||| Sbjct: 774 tattccaaaagttgaagctgca 795
>ref|XM_721814.1| Plasmodium yoelii yoelii str. 17XNL dimethyladenosine transferase (PY06281) partial mRNA Length = 1269 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1190 tattccaaaagttgaagctgca 1211 |||||||||||||||||||||| Sbjct: 984 tattccaaaagttgaagctgca 1005
>gb|DQ084081.1| Monarcha chrysomela NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 1037 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1359 cgatgttgacttgtttgttggtgtgt 1384 ||||||||||| |||||||||||||| Sbjct: 966 cgatgttgactggtttgttggtgtgt 941
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome Length = 5631606 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 cgcgccacccgcggcagcgcc 159 ||||||||||||||||||||| Sbjct: 683185 cgcgccacccgcggcagcgcc 683165
>emb|CT835096.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014N06, full insert sequence Length = 437 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 gcagcgtcatccagggcctcgccga 301 ||||| ||||||||||||||||||| Sbjct: 63 gcagcctcatccagggcctcgccga 87
>emb|CT832475.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN048A02, full insert sequence Length = 696 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 gcagcgtcatccagggcctcgccga 301 ||||| ||||||||||||||||||| Sbjct: 353 gcagcctcatccagggcctcgccga 377
>ref|NM_001055203.1| Oryza sativa (japonica cultivar-group) Os03g0103300 (Os03g0103300) mRNA, complete cds Length = 555 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 gcagcgtcatccagggcctcgccga 301 ||||| ||||||||||||||||||| Sbjct: 392 gcagcctcatccagggcctcgccga 416
>ref|XM_623488.2| PREDICTED: Apis mellifera similar to CG12164-PA, transcript variant 2 (LOC551089), mRNA Length = 1746 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 agcgccggaggaggaggatggggcg 178 ||||||| ||||||||||||||||| Sbjct: 306 agcgccgtaggaggaggatggggcg 282 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 agcgccggaggaggaggatggggcg 178 ||||||| ||||||||||||||||| Sbjct: 357 agcgccgtaggaggaggatggggcg 333
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome Length = 4133097 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 776 tcaggaaggcaaagagcaggc 796 ||||||||||||||||||||| Sbjct: 3942231 tcaggaaggcaaagagcaggc 3942211
>gb|BC079493.1| Danio rerio NK2 transcription factor related 7, mRNA (cDNA clone MGC:100762 IMAGE:7152536), complete cds Length = 1185 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 tggttccagaaccggaggtac 386 ||||||||||||||||||||| Sbjct: 708 tggttccagaaccggaggtac 728
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence Length = 127917 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 gcagcgtcatccagggcctcgccga 301 ||||| ||||||||||||||||||| Sbjct: 35872 gcagcctcatccagggcctcgccga 35896
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 gcagcgtcatccagggcctcgccga 301 ||||| ||||||||||||||||||| Sbjct: 132805 gcagcctcatccagggcctcgccga 132829
>dbj|AK011245.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2600017J23 product:weakly similar to TNF-INDUCED PROTEIN GG2-1 [Homo sapiens], full insert sequence Length = 1389 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 6 tacagcaggagacacagaggcgaga 30 |||||||||||||||||||| |||| Sbjct: 747 tacagcaggagacacagaggagaga 723
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 gcagcgtcatccagggcctcgccga 301 ||||| ||||||||||||||||||| Sbjct: 198805 gcagcctcatccagggcctcgccga 198829
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 ggaggaggaggatggggcggc 180 ||||||||||||||||||||| Sbjct: 8900613 ggaggaggaggatggggcggc 8900633
>emb|AL356320.8| Human DNA sequence from clone RP11-201O14 on chromosome 1 Contains the 5' end of the PUM1 gene pumilio homolog 1 (Drosophila), a novel pseudogene, a ribosomal protein S29 (RPS29) pseudogene and a selenoprotein W 1 (SEPW1) pseudogene, complete sequence Length = 108687 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 ggcagcgccggaggaggagga 171 ||||||||||||||||||||| Sbjct: 68073 ggcagcgccggaggaggagga 68053
>ref|NM_001003074.1| Canis familiaris progesterone receptor (PGR), mRNA gb|AF177470.1|AF177470 Canis familiaris progesterone receptor (PR) mRNA, complete cds Length = 3338 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 gggcgcgccgccgccgcaggg 430 ||||||||||||||||||||| Sbjct: 1541 gggcgcgccgccgccgcaggg 1561
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0453A06 Length = 154378 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 ggaggaggaggatggggcggc 180 ||||||||||||||||||||| Sbjct: 8368 ggaggaggaggatggggcggc 8388
>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0469E09 Length = 146081 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 ggaggaggaggatggggcggc 180 ||||||||||||||||||||| Sbjct: 136641 ggaggaggaggatggggcggc 136661
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 277 gcagcgtcatccagggcctcgccga 301 ||||| ||||||||||||||||||| Sbjct: 63851 gcagcctcatccagggcctcgccga 63827
>emb|BX323861.10| Zebrafish DNA sequence from clone CH211-209F23 in linkage group 2, complete sequence Length = 173663 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1154 ttcagtttcagatgtgcagat 1174 ||||||||||||||||||||| Sbjct: 82264 ttcagtttcagatgtgcagat 82284 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1154 ttcagtttcagatgtgcagat 1174 ||||||||||||||||||||| Sbjct: 97791 ttcagtttcagatgtgcagat 97811
>dbj|BS000016.1| Pan troglodytes chromosome 22 clone:PTB-066F21, map 22, complete sequences Length = 148564 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 760 atctcattctttgttttcagg 780 ||||||||||||||||||||| Sbjct: 66416 atctcattctttgttttcagg 66436
>emb|AL954842.7| Zebrafish DNA sequence from clone DKEY-33E5 in linkage group 8, complete sequence Length = 169016 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1154 ttcagtttcagatgtgcagat 1174 ||||||||||||||||||||| Sbjct: 133415 ttcagtttcagatgtgcagat 133395
>emb|AL163208.2|HS21C008 Homo sapiens chromosome 21 segment HS21C008 Length = 340000 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 760 atctcattctttgttttcagg 780 ||||||||||||||||||||| Sbjct: 274557 atctcattctttgttttcagg 274577
>gb|AF130248.1|AF130248 Homo sapiens clone 10J13 chromosome 21 map 21q11.2, complete sequence Length = 137074 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 760 atctcattctttgttttcagg 780 ||||||||||||||||||||| Sbjct: 60754 atctcattctttgttttcagg 60774
>emb|BX004845.5| Zebrafish DNA sequence from clone CH211-67O1, complete sequence Length = 165089 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 tggttccagaaccggaggtac 386 ||||||||||||||||||||| Sbjct: 53367 tggttccagaaccggaggtac 53347
>ref|NM_131419.1| Danio rerio NK2 transcription factor related 7 (nkx2.7), mRNA gb|U66573.1|DRU66573 Danio rerio homeodomain protein Nkx2.7 (nkx2.7) mRNA, complete cds Length = 1167 Score = 42.1 bits (21), Expect = 5.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 tggttccagaaccggaggtac 386 ||||||||||||||||||||| Sbjct: 697 tggttccagaaccggaggtac 717
>gb|DQ084093.1| Monarcha leucotis NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 1037 Score = 42.1 bits (21), Expect = 5.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1360 gatgttgacttgtttgttggtgtgt 1384 |||||||||| |||||||||||||| Sbjct: 965 gatgttgactggtttgttggtgtgt 941 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 248,832,713 Number of extensions: 14904685 Number of successful extensions: 335659 Number of sequences better than 10.0: 63 Number of HSP's gapped: 335652 Number of HSP's successfully gapped: 130 Length of query: 1487 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1464 Effective length of database: 18,503,978,556 Effective search space: 27089824605984 Effective search space used: 27089824605984 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
