| Clone Name | FLbaf178h02 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os05g38520:12005.t03394:unspliced-genomic 60S ribosomal protein L36-2, putative, expressed| Length = 2068 Score = 144 bits (309), Expect(2) = 3e-52 Identities = 63/67 (94%), Positives = 64/67 (95%) Frame = +2 / +2 Query: 188 KGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 367 K TKRV FVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEM+ Sbjct: 956 KSTKRVTFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMA 1135 Query: 368 SVLRKMR 388 VLRKMR Sbjct: 1136 GVLRKMR 1156 Score = 84.9 bits (179), Expect(2) = 3e-52 Identities = 33/34 (97%), Positives = 34/34 (100%) Frame = +2 / +3 Query: 86 MAPSQPKSGLFVGINKGHVITKRELPPRPSDRKG 187 MAPSQPKSGLFVGINKGHV+TKRELPPRPSDRKG Sbjct: 168 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKG 269 Score = 115 bits (245), Expect(2) = 2e-42 Identities = 55/67 (82%), Positives = 56/67 (83%) Frame = -3 / -2 Query: 387 LIFLRTLDISSLFFFALL*VPSFLLATLSARLSFPTLRSSVMRFSYGANPATSLIKFLTK 208 LIFLRT ISSLFF ALL VPSFL AT SARLS PTLRSSV+RFS GANPATSLIKFLTK Sbjct: 1155 LIFLRTPAISSLFFLALLWVPSFLFATFSARLSLPTLRSSVIRFS*GANPATSLIKFLTK 976 Query: 207 CTLFVPF 187 TL V F Sbjct: 975 VTLLVDF 955 Score = 81.3 bits (171), Expect(2) = 2e-42 Identities = 31/34 (91%), Positives = 32/34 (94%) Frame = -3 / -1 Query: 186 PLRSDGRGGSSRLVMTWPLLMPTKSPDLGCDGAM 85 PLRSDGRGGSSRLV TWPLLMPTKSPD GCDGA+ Sbjct: 268 PLRSDGRGGSSRLVTTWPLLMPTKSPDFGCDGAI 167 Score = 70.3 bits (147), Expect(4) = 5e-29 Identities = 29/40 (72%), Positives = 33/40 (82%) Frame = -2 / -1 Query: 307 LECTLVLSNLKKLSDAFLIWSESSNLPDQVPDKMHPLCAF 188 L+CTLVL+N +KLSD LI S+SSNLPDQVPDK HPL F Sbjct: 1075 LQCTLVLANFEKLSDTLLIGSKSSNLPDQVPDKGHPLGGF 956 Score = 62.5 bits (130), Expect(4) = 5e-29 Identities = 26/28 (92%), Positives = 27/28 (96%) Frame = -2 / -3 Query: 193 AFPLAVGRAGRQLALGDDVALVDAHEEP 110 A+PLAVGRA RQLALGDDVALVDAHEEP Sbjct: 275 AYPLAVGRARRQLALGDDVALVDAHEEP 192 Score = 35.4 bits (71), Expect(4) = 5e-29 Identities = 14/16 (87%), Positives = 14/16 (87%) Frame = -1 / -2 Query: 134 PC*CPRRALTWAATAP 87 PC*CPRRA T AATAP Sbjct: 216 PC*CPRRARTSAATAP 169 Score = 22.6 bits (43), Expect(4) = 5e-29 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = -2 / -1 Query: 388 PHLPQDT*H 362 PHLP+DT H Sbjct: 1156 PHLPEDTSH 1130 Score = 108 bits (231), Expect = 4e-23 Identities = 41/59 (69%), Positives = 49/59 (83%) Frame = +1 / +1 Query: 187 ERHKEGAFCQELDQGGCWIRSI*ETHH*AS*GWKGQACTQGRQEKAWYSQESKEEERGD 363 E H+EG CQELDQGGCWI S+*E +H*AS W+GQACT+G +EKAW+ QE +EEERGD Sbjct: 955 EIHQEGDLCQELDQGGCWICSL*EAYH*ASQSWQGQACTEGGKEKAWHPQEGQEEERGD 1131 Score = 61.6 bits (128), Expect = 6e-09 Identities = 32/46 (69%), Positives = 34/46 (73%) Frame = +3 / +3 Query: 198 RGCILSGT*SGRLLDSLHMRNASLSFLRLERTSVHSRSPRESLVLT 335 RG LSGT*SGRLLD L MR+ SLSF +L RTSVH R RESL T Sbjct: 966 RG*PLSGT*SGRLLDLLPMRSVSLSFSKLARTSVH*RWQRESLAPT 1103 Score = 44.1 bits (90), Expect = 0.001 Identities = 21/32 (65%), Positives = 22/32 (68%) Frame = -1 / -3 Query: 335 CEYQAFSWRP*VHACPFQP*EAQ*CVSHMERI 240 C QAFS P VHACP Q *EAQ* SH E+I Sbjct: 1103 CGCQAFSLPPSVHACPCQL*EAQ*YASHREQI 1008
>LOC_Os01g62350:12001.t05610:unspliced-genomic 60S ribosomal protein L36-2, putative, expressed| Length = 2610 Score = 140 bits (300), Expect(2) = 9e-51 Identities = 60/67 (89%), Positives = 63/67 (94%) Frame = +2 / +2 Query: 188 KGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 367 K TKRV+FVR LIREV GFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEM+ Sbjct: 1358 KSTKRVNFVRGLIREVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMA 1537 Query: 368 SVLRKMR 388 V+RKMR Sbjct: 1538 GVIRKMR 1558 Score = 84.5 bits (178), Expect(2) = 9e-51 Identities = 33/35 (94%), Positives = 34/35 (97%) Frame = +2 / +1 Query: 83 AMAPSQPKSGLFVGINKGHVITKRELPPRPSDRKG 187 AMAP QPKSGLFVGINKGHV+TKRELPPRPSDRKG Sbjct: 202 AMAPPQPKSGLFVGINKGHVVTKRELPPRPSDRKG 306 Score = 115 bits (245), Expect(2) = 6e-43 Identities = 55/67 (82%), Positives = 56/67 (83%) Frame = -3 / -1 Query: 387 LIFLRTLDISSLFFFALL*VPSFLLATLSARLSFPTLRSSVMRFSYGANPATSLIKFLTK 208 LIFL T ISSLFFFALL VPSFLLAT SARLSFPT RSSV+RFSYGANP TSLIK LTK Sbjct: 1557 LIFLMTPAISSLFFFALLWVPSFLLATFSARLSFPTFRSSVIRFSYGANPTTSLIKPLTK 1378 Query: 207 CTLFVPF 187 TL V F Sbjct: 1377 FTLLVLF 1357 Score = 83.5 bits (176), Expect(2) = 6e-43 Identities = 33/35 (94%), Positives = 33/35 (94%) Frame = -3 / -2 Query: 186 PLRSDGRGGSSRLVMTWPLLMPTKSPDLGCDGAMA 82 PLRSDGRGGSSRLV TWPLLMPTKSPDLGC GAMA Sbjct: 305 PLRSDGRGGSSRLVTTWPLLMPTKSPDLGCGGAMA 201 Score = 77.1 bits (162), Expect(3) = 7e-23 Identities = 30/41 (73%), Positives = 36/41 (87%) Frame = -2 / -3 Query: 310 DLECTLVLSNLKKLSDAFLIWSESSNLPDQVPDKMHPLCAF 188 DL+CTLVLSNL+KLSD+FLIWS+S NLP+Q PDK+H L F Sbjct: 1480 DLQCTLVLSNLQKLSDSFLIWSKSHNLPNQAPDKIHSLGTF 1358 Score = 52.8 bits (109), Expect(3) = 7e-23 Identities = 23/27 (85%), Positives = 24/27 (88%) Frame = -2 / -1 Query: 190 FPLAVGRAGRQLALGDDVALVDAHEEP 110 +PLAVGRA QLALGDDVALVDA EEP Sbjct: 309 YPLAVGRARWQLALGDDVALVDADEEP 229 Score = 21.7 bits (41), Expect(3) = 7e-23 Identities = 7/9 (77%), Positives = 7/9 (77%) Frame = -2 / -3 Query: 388 PHLPQDT*H 362 PHLP DT H Sbjct: 1558 PHLPDDTRH 1532 Score = 103 bits (219), Expect = 2e-21 Identities = 44/59 (74%), Positives = 49/59 (83%) Frame = +1 / +1 Query: 187 ERHKEGAFCQELDQGGCWIRSI*ETHH*AS*GWKGQACTQGRQEKAWYSQESKEEERGD 363 E+++E FCQ LD GGC I SI*ET+H*AS GWKGQACT+GR EKA Y QESKEEERGD Sbjct: 1357 EKYQESEFCQGLD*GGCGICSI*ETNH*ASEGWKGQACTEGR*EKARYPQESKEEERGD 1533 Score = 59.3 bits (123), Expect(2) = 2e-13 Identities = 25/32 (78%), Positives = 27/32 (84%) Frame = -1 / -2 Query: 335 CEYQAFSWRP*VHACPFQP*EAQ*CVSHMERI 240 C Y+AFS RP VHACPFQP EAQ* VSHME+I Sbjct: 1505 CGYRAFS*RPSVHACPFQPSEAQ*FVSHMEQI 1410 Score = 40.0 bits (81), Expect(2) = 2e-13 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = -1 / -3 Query: 134 PC*CPRRALTWAATAPW 84 PC*C RRA TWAA APW Sbjct: 253 PC*CRRRAPTWAAAAPW 203 Score = 66.1 bits (138), Expect = 3e-10 Identities = 35/49 (71%), Positives = 35/49 (71%) Frame = +3 / +3 Query: 189 KAQRGCILSGT*SGRLLDSLHMRNASLSFLRLERTSVHSRSPRESLVLT 335 K R ILSG * GRL D LHMRN SLSF RLERTSVH RS RES V T Sbjct: 1359 KVPRE*ILSGA*LGRLWDLLHMRNESLSF*RLERTSVH*RSLRESSVPT 1505
>LOC_Os02g49270:12002.t04511:unspliced-genomic proliferating-cell nucleolar antigen p120, putative, expressed| Length = 5382 Score = 35.4 bits (71), Expect = 0.44 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = -2 / +1 Query: 295 LVLSNLKKLSDAFLIWSESSNLPDQVPDKMHP 200 L L+ LKKLS+ + SESSN+P++ +K P Sbjct: 4405 LPLTQLKKLSNTIPVASESSNVPEEAIEKADP 4500
>LOC_Os10g43060:12010.t03555:unspliced-genomic expressed protein| Length = 2687 Score = 34.1 bits (68), Expect = 1.1 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -3 / +2 Query: 411 PAPPPPADLIFLRTLDISSLFFFALL*VPSFLLATLSARLSFPTLRSS 268 P PPPP + +L S F+ SF+ A LS R LRSS Sbjct: 62 PPPPPPPSSLLFSSLVSSHPILFSSAFCSSFICAVLSTRPRLSFLRSS 205
>LOC_Os06g04620:12006.t00352:unspliced-genomic GDP-mannose 4,6 dehydratase 2, putative, expressed| Length = 1678 Score = 34.1 bits (68), Expect = 1.1 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +2 / +3 Query: 47 RSQRQQERAGTPAMAPSQPKSGLFVGINKGHVITKRELPPRPSDRKGKGTKRVH 208 R +R+++R G A+ + P++ G GH RELP + R+G R H Sbjct: 90 RRRRRRQRRGRAAVGSALPRAAAEGGPGDGHHGAGRELPDGAAPRQGLRGARPH 251
>LOC_Os12g07790:12012.t00661:unspliced-genomic no apical meristem protein| Length = 1716 Score = 29.5 bits (58), Expect(2) = 1.4 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 / -2 Query: 125 CPRRALTWAATAPWPEFP 72 CPRRA ++ +PWP P Sbjct: 881 CPRRAAASSSKSPWPRSP 828 Score = 24.9 bits (48), Expect(2) = 1.4 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = -3 / -3 Query: 417 LSPAPPPPA 391 L+PAPPPPA Sbjct: 1024 LAPAPPPPA 998
>LOC_Os10g32720:12010.t02580:unspliced-genomic plasma membrane associated protein, putative, expressed| Length = 793 Score = 33.6 bits (67), Expect = 1.6 Identities = 14/35 (40%), Positives = 24/35 (68%) Frame = -3 / -1 Query: 327 PSFLLATLSARLSFPTLRSSVMRFSYGANPATSLI 223 P+FL+ LSA + P+ ++ + RFS ++PAT L+ Sbjct: 163 PAFLMELLSAHPANPSKKTYMRRFSSSSDPATFLL 59
>LOC_Os05g01510:12005.t004760:unspliced-genomic cytoplasmic membrane protein, putative, expressed| Length = 4387 Score = 33.6 bits (67), Expect = 1.6 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +3 / +3 Query: 654 LFIQLCSLSGFCTCDCCCVL 713 +F+ L ++ GFC C CCC L Sbjct: 3465 IFVFLLAIYGFCKCICCCSL 3524
>LOC_Os04g46920:12004.t05428:unspliced-genomic actin depolymerizing factor, putative, expressed| Length = 2570 Score = 33.1 bits (66), Expect = 2.2 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -3 / -2 Query: 411 PAPPPPADLIFLRTLDISSLFF 346 PAPPPPA L+FL L + FF Sbjct: 295 PAPPPPALLVFLNMLFLLFFFF 230
>LOC_Os09g09470:12009.t00739:unspliced-genomic nucleotide binding protein, putative, expressed| Length = 7960 Score = 32.7 bits (65), Expect = 3.0 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 / +1 Query: 574 NLFKIFT*VWRLCFIIITCLFD 639 NLFKI *+W+L + II C+ D Sbjct: 2824 NLFKIIF*IWKLRWFIIFCIID 2889
>LOC_Os03g51710:12003.t04498:unspliced-genomic KNOX1 domain containing protein, expressed| Length = 6460 Score = 32.7 bits (65), Expect = 3.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 / +2 Query: 131 KGHVITKRELPPRPSDRKGKGTKRVH 208 +G V+ +R PPR SD G G RVH Sbjct: 5723 RGGVLRRRRRPPRRSDGGGSGIGRVH 5800
>LOC_Os03g51700:12003.t04497:unspliced-genomic expressed protein| Length = 2830 Score = 32.7 bits (65), Expect = 3.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 / -3 Query: 131 KGHVITKRELPPRPSDRKGKGTKRVH 208 +G V+ +R PPR SD G G RVH Sbjct: 2819 RGGVLRRRRRPPRRSDGGGSGIGRVH 2742
>LOC_Os09g37860:12009.t03260:unspliced-genomic proliferating-cell nucleolar antigen p120, putative, expressed| Length = 5315 Score = 32.2 bits (64), Expect = 4.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 / +1 Query: 295 LVLSNLKKLSDAFLIWSESSNLPDQVPDKMHP 200 L + LKKLS+ + SESS +P++ +K P Sbjct: 4351 LAFTQLKKLSNTIPVTSESSKVPEEAIEKTDP 4446
>LOC_Os06g22480:12006.t02062:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3067 Score = 32.2 bits (64), Expect = 4.1 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +1 / -3 Query: 586 IFT*VWRLCFIIITCLFDYLILSCLFSYVACLGF 687 + T + ++ +++CLF YL+++ L S VAC F Sbjct: 2000 VMTTILKIPLNLMSCLFWYLLINLLLSIVACTTF 1899
>LOC_Os06g15970:12006.t01470:unspliced-genomic transposon protein, putative, unclassified| Length = 4239 Score = 32.2 bits (64), Expect = 4.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 / -1 Query: 171 GRGGSSRLVMTWPLLMPTKSPDLGCDGAMAGVPARSC*R*ERTQM 37 GRGGS R + P + PT + G M +P+R C R ++M Sbjct: 600 GRGGSLRCTGSTPAITPTPDVEAGIRLPMLILPSRRCRRGSGSRM 466
>LOC_Os06g46010:12006.t04289:unspliced-genomic hypothetical protein| Length = 291 Score = 25.8 bits (50), Expect(2) = 4.8 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -3 / -2 Query: 420 FLSPAPPPPADLIFLRTLDISS 355 F+ P PP A L L T ISS Sbjct: 281 FVRPPPPATASLAHLNTTQISS 216 Score = 23.1 bits (44), Expect(2) = 4.8 Identities = 11/20 (55%), Positives = 11/20 (55%) Frame = -3 / -1 Query: 123 PTKSPDLGCDGAMAGVPARS 64 P PDL DGA A PA S Sbjct: 240 PEHDPDLVEDGAGAAAPAVS 181
>LOC_Os11g07910:12011.t00682:unspliced-genomic transmembrane 9 superfamily protein member 3 precursor, putative,| expressed Length = 6570 Score = 31.8 bits (63), Expect = 5.6 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 / +2 Query: 417 LSPAPPPPADLIFLRTLDISSLFFFAL 337 LSPAPPPP L +L +SS F L Sbjct: 242 LSPAPPPPLSLSLSLSLSLSSFLPFFL 322
>LOC_Os08g25570:12008.t02324:unspliced-genomic histone deacetylase, putative, expressed| Length = 5012 Score = 31.8 bits (63), Expect = 5.6 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -3 / -2 Query: 123 PTKSPDLGCDGAMAGVPARS 64 P S GCDGA +G PARS Sbjct: 238 PPASAPCGCDGASSGAPARS 179
>LOC_Os05g28350:12005.t02484:unspliced-genomic AP2 domain transcription factor, putative, expressed| Length = 1180 Score = 31.8 bits (63), Expect = 5.6 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -3 / -3 Query: 435 AKFYFFLSPAPPPPADLI 382 A F+F L P PPPPA L+ Sbjct: 113 AAFFFVLPPPPPPPAPLL 60
>LOC_Os01g45690:12001.t04022:unspliced-genomic transposon protein, putative, unclassified| Length = 5673 Score = 31.8 bits (63), Expect = 5.6 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = -3 / -1 Query: 201 LFVPFPLRSDGRGGSSRLVMTWPLLMPTKSPDLGCDGAMAGVPARSC*R*ERTQM 37 +F R GRGG+ R + P + P + G M +P+R C R ++M Sbjct: 627 IFTSVSRRHSGRGGALRCTGSTPAITPAPDVEAGIRLPMLILPSRRCRRGSGSRM 463
>LOC_Os08g34400:12008.t03180:unspliced-genomic hypothetical protein| Length = 3982 Score = 30.9 bits (61), Expect(2) = 7.3 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 / -2 Query: 53 QRQQERAGTPAMAPSQPKSGLFVGINKGHVITKRELPPRPSDRKGK 190 QRQ+ R G ++G VG+ G V + R LPP ++G+ Sbjct: 3156 QRQRRRRGGRRRCRRWRRAGGGVGVGDGPVASPRLLPPAHMKKRGR 3019 Score = 22.1 bits (42), Expect(2) = 7.3 Identities = 7/12 (58%), Positives = 8/12 (66%) Frame = +1 / -2 Query: 634 FDYLILSCLFSY 669 F Y +LSC SY Sbjct: 1083 FQYTVLSCYISY 1048
>LOC_Os10g26340:12010.t02046:unspliced-genomic cytochrome P450 78A11, putative, expressed| Length = 1754 Score = 31.3 bits (62), Expect = 7.7 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 / -3 Query: 71 AGTPAMAPSQPKSGLFVGINKGHVITKRELPPRP 172 AG P+ +PS P +G + T+R PPRP Sbjct: 1326 AGAPSASPSPPPAGTASAPRRRRWDTRRRPPPRP 1225
>LOC_Os04g11050:12004.t00933:unspliced-genomic expressed protein| Length = 4452 Score = 31.3 bits (62), Expect = 7.7 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +3 / +2 Query: 237 LDSLHMRNASLSFLRLERTSVHSRSPRESLVLT 335 L LH+R+ SLSFL E T+ +P ES T Sbjct: 698 LSGLHLRSLSLSFLASEHTTHMELAPPESTEAT 796
>LOC_Os02g46610:12002.t04248:unspliced-genomic expressed protein| Length = 1646 Score = 31.3 bits (62), Expect = 7.7 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = -3 / -1 Query: 435 AKFYFFLSPAPPPP 394 A F+FFL P+PPPP Sbjct: 971 ALFFFFLPPSPPPP 930
>LOC_Os05g26990:12005.t02353:unspliced-genomic phospholipid-transporting ATPase 2, putative, expressed| Length = 7163 Score = 25.4 bits (49), Expect(2) = 8.8 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -2 / +2 Query: 265 DAFLIWSESSNLPDQVPDKMHPL 197 D +WS ++L +VP HPL Sbjct: 263 DPASVWSGHADLTTRVPSSPHPL 331 Score = 22.6 bits (43), Expect(2) = 8.8 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = -3 / +2 Query: 417 LSPAPPPPA 391 L P+PPPPA Sbjct: 134 LRPSPPPPA 160 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 228,384,832 Number of extensions: 3218882 Number of successful extensions: 22562 Number of sequences better than 10.0: 25 Length of query: 243 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 194 Effective length of database: 52,856,264 Effective search space: 10254115216 Effective search space used: 10254115216 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)