| Clone Name | FLbaf178d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ245105.1| Zea mays clone 13062 mRNA sequence Length = 872 Score = 436 bits (220), Expect = e-119 Identities = 385/440 (87%) Strand = Plus / Plus Query: 105 ggcatcaaggagaagggcctcgccaacttcctccgctacgcccgcgacgagggataccta 164 ||||||||||||||||| ||| |||||||| ||||| ||| ||||||||| |||||| | Sbjct: 197 ggcatcaaggagaaggggctcaccaacttcatccgcgacgtccgcgacgaaggatacttc 256 Query: 165 aaatgccttggggatggaaacctattgcaaaccaaaattcacaacattggtgcaaccctt 224 ||||||||| ||| || ||||| |||||||| ||||||||||| ||||| ||||| ||| Sbjct: 257 aaatgccttctggacgggaaccttttgcaaacgaaaattcacaatattggagcaacactt 316 Query: 225 gtaggagttgacagttttggaaacaagtactatgagaaactacatgacactcagtatgga 284 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 317 gtaggagttgacaagtttggaaacaaatactatgagaaactacatgacactcagtacgga 376 Query: 285 aggcataggtgggtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcctgct 344 ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| || Sbjct: 377 aggcataggtgggtagaatatgcagagaaaggtcgctacaatgcatcccaagtgcctcct 436 Query: 345 gaatggcatggatggctgcaccacattacagacagcactggggacaagctgctggaggag 404 |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| | || Sbjct: 437 gaatggcatggatggctgcaccacatcacagatagcactggggataagctgctgaaccag 496 Query: 405 aagactaaaaagttcattatggagcacagacagaactacactggacagggtgacgacttg 464 |||||| | || | || | ||||||| ||||||||| | || ||||||| || || Sbjct: 497 aagactgctaggtaccttgtagagcacaagcagaactactccggtgagggtgaagagctg 556 Query: 465 atctaccactccaaggggcatgctctgaaccctgggcaaagggactggacaaggtaccag 524 |||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| ||| Sbjct: 557 atctaccactccaaggggcatgctttgaatccggggcaaagggactggacgaggtatcag 616 Query: 525 ccttgggaaccaaagaaaga 544 || ||||| ||||||||||| Sbjct: 617 ccctgggagccaaagaaaga 636
>gb|DQ245988.1| Zea mays clone 93996 mRNA sequence Length = 726 Score = 400 bits (202), Expect = e-108 Identities = 406/474 (85%) Strand = Plus / Plus Query: 71 atccatggccgcggtggttcggagcgtgtggcagggcatcaaggagaagggcctcgccaa 130 ||||||||| |||||||| || |||| | | |||||||||||||||||| ||| |||| Sbjct: 74 atccatggcggcggtggtgcgcggcgtcttgaggggcatcaaggagaagggactcaccaa 133 Query: 131 cttcctccgctacgcccgcgacgagggatacctaaaatgccttggggatggaaacctatt 190 |||| ||||| ||| ||||||||| |||||| | ||||||||| ||| || ||||| || Sbjct: 134 cttcatccgcgacgtccgcgacgaaggatacttcaaatgccttctggacgggaacctttt 193 Query: 191 gcaaaccaaaattcacaacattggtgcaacccttgtaggagttgacagttttggaaacaa 250 |||||| ||||| ||||| ||||| ||||| |||||||||||||||| ||||| ||||| Sbjct: 194 gcaaacgaaaatccacaatattggcgcaacacttgtaggagttgacaagtttggtaacaa 253 Query: 251 gtactatgagaaactacatgacactcagtatggaaggcataggtgggtagagtatgcaga 310 || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 254 atattatgagaaactacatgacactcagtatggaaggcataggtgggtagaatatgcaga 313 Query: 311 gaagggtcgctacaatgcgtcccaagtgcctgctgaatggcatggatggctgcaccacat 370 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 gaaaggtcgttacaatgcatcccaagtgcctgctgaatggcatggatggctgcaccacat 373 Query: 371 tacagacagcactggggacaagctgctggaggagaagactaaaaagttcattatggagca 430 ||||| ||||| ||||| ||||||||| | |||||||| | || | || | ||||| Sbjct: 374 cacagatagcaccggggataagctgctgaaccagaagactgctaggtaccttgtagagca 433 Query: 431 cagacagaactacactggacagggtgacgacttgatctaccactccaaggggcatgctct 490 || ||||||||| | || ||||||| || | |||||||||||||||||||||||| | Sbjct: 434 caagcagaactactccggtgagggtgaagagcttatctaccactccaaggggcatgcttt 493 Query: 491 gaaccctgggcaaagggactggacaaggtaccagccttgggaaccaaagaaaga 544 ||| || || |||||||||||||| ||||| ||||| ||||| ||||||||||| Sbjct: 494 gaatccgggacaaagggactggacgaggtatcagccctgggagccaaagaaaga 547
>gb|AY104452.1| Zea mays PCO122208 mRNA sequence Length = 921 Score = 400 bits (202), Expect = e-108 Identities = 406/474 (85%) Strand = Plus / Plus Query: 71 atccatggccgcggtggttcggagcgtgtggcagggcatcaaggagaagggcctcgccaa 130 ||||||||| |||||||| || |||| | | |||||||||||||||||| ||| |||| Sbjct: 79 atccatggcggcggtggtgcgcggcgtcttgaggggcatcaaggagaagggactcaccaa 138 Query: 131 cttcctccgctacgcccgcgacgagggatacctaaaatgccttggggatggaaacctatt 190 |||| ||||| ||| ||||||||| |||||| | ||||||||| ||| || ||||| || Sbjct: 139 cttcatccgcgacgtccgcgacgaaggatacttcaaatgccttctggacgggaacctttt 198 Query: 191 gcaaaccaaaattcacaacattggtgcaacccttgtaggagttgacagttttggaaacaa 250 |||||| ||||| ||||| ||||| ||||| |||||||||||||||| ||||| ||||| Sbjct: 199 gcaaacgaaaatccacaatattggcgcaacacttgtaggagttgacaagtttggtaacaa 258 Query: 251 gtactatgagaaactacatgacactcagtatggaaggcataggtgggtagagtatgcaga 310 || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 259 atattatgagaaactacatgacactcagtatggaaggcataggtgggtagaatatgcaga 318 Query: 311 gaagggtcgctacaatgcgtcccaagtgcctgctgaatggcatggatggctgcaccacat 370 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 gaaaggtcgttacaatgcatcccaagtgcctgctgaatggcatggatggctgcaccacat 378 Query: 371 tacagacagcactggggacaagctgctggaggagaagactaaaaagttcattatggagca 430 ||||| ||||| ||||| ||||||||| | |||||||| | || | || | ||||| Sbjct: 379 cacagatagcaccggggataagctgctgaaccagaagactgctaggtaccttgtagagca 438 Query: 431 cagacagaactacactggacagggtgacgacttgatctaccactccaaggggcatgctct 490 || ||||||||| | || ||||||| || | |||||||||||||||||||||||| | Sbjct: 439 caagcagaactactccggtgagggtgaagagcttatctaccactccaaggggcatgcttt 498 Query: 491 gaaccctgggcaaagggactggacaaggtaccagccttgggaaccaaagaaaga 544 ||| || || |||||||||||||| ||||| ||||| ||||| ||||||||||| Sbjct: 499 gaatccgggacaaagggactggacgaggtatcagccctgggagccaaagaaaga 552
>ref|NM_001072038.1| Oryza sativa (japonica cultivar-group) Os10g0579300 (Os10g0579300) mRNA, complete cds Length = 787 Score = 394 bits (199), Expect = e-106 Identities = 412/483 (85%) Strand = Plus / Plus Query: 73 ccatggccgcggtggttcggagcgtgtggcagggcatcaaggagaagggcctcgccaact 132 ||||||| |||||||| || |||||| | | |||||| ||||||||||||| |||||| Sbjct: 61 ccatggctgcggtggtgcgtggcgtgttgaacggcatccgggagaagggcctctccaact 120 Query: 133 tcctccgctacgcccgcgacgagggatacctaaaatgccttggggatggaaacctattgc 192 |||||||| | ||||||||||| || ||| | ||||||||| |||||||||||| |||| Sbjct: 121 tcctccgccatgcccgcgacgaaggctacttcaaatgccttctggatggaaacctcttgc 180 Query: 193 aaaccaaaattcacaacattggtgcaacccttgtaggagttgacagttttggaaacaagt 252 |||| ||||| ||||| || || || || ||||||||||| |||| || || ||||| | Sbjct: 181 aaactaaaatccacaatatcggcgccacacttgtaggagtagacaagttcggcaacaaat 240 Query: 253 actatgagaaactacatgacactcagtatggaaggcataggtgggtagagtatgcagaga 312 | ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 241 attatgaaaaactacatgacactcagtatggaaggcacaggtgggtagaatatgcagaga 300 Query: 313 agggtcgctacaatgcgtcccaagtgcctgctgaatggcatggatggctgcaccacatta 372 | || ||||||||||| ||||||||||| |||||||||||||||||||||||||||| | Sbjct: 301 aagggcgctacaatgcatcccaagtgccccctgaatggcatggatggctgcaccacatca 360 Query: 373 cagacagcactggggacaagctgctggaggagaagactaaaaagttcattatggagcaca 432 | ||||||||||||||| |||| |||||| |||| ||||| || ||| |||| |||| Sbjct: 361 ccgacagcactggggacgagctactggagcagaatgctaaagcgtacatcgtggatcaca 420 Query: 433 gacagaactacactggacagggtgacgacttgatctaccactccaaggggcatgctctga 492 |||||| | | || ||||||| || |||||||||||||||||||||||||||| | Sbjct: 421 aggagaacttctccggcgagggtgaggaactgatctaccactccaaggggcatgctctaa 480 Query: 493 accctgggcaaagggactggacaaggtaccagccttgggaaccaaagaaagaagaggcca 552 |||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 481 acccaggacaaagggactggacgaggtaccagccgtgggaaccaaagaaagaagaggcaa 540 Query: 553 cct 555 ||| Sbjct: 541 cct 543
>dbj|AK103692.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136H20, full insert sequence Length = 788 Score = 394 bits (199), Expect = e-106 Identities = 412/483 (85%) Strand = Plus / Plus Query: 73 ccatggccgcggtggttcggagcgtgtggcagggcatcaaggagaagggcctcgccaact 132 ||||||| |||||||| || |||||| | | |||||| ||||||||||||| |||||| Sbjct: 62 ccatggctgcggtggtgcgtggcgtgttgaacggcatccgggagaagggcctctccaact 121 Query: 133 tcctccgctacgcccgcgacgagggatacctaaaatgccttggggatggaaacctattgc 192 |||||||| | ||||||||||| || ||| | ||||||||| |||||||||||| |||| Sbjct: 122 tcctccgccatgcccgcgacgaaggctacttcaaatgccttctggatggaaacctcttgc 181 Query: 193 aaaccaaaattcacaacattggtgcaacccttgtaggagttgacagttttggaaacaagt 252 |||| ||||| ||||| || || || || ||||||||||| |||| || || ||||| | Sbjct: 182 aaactaaaatccacaatatcggcgccacacttgtaggagtagacaagttcggcaacaaat 241 Query: 253 actatgagaaactacatgacactcagtatggaaggcataggtgggtagagtatgcagaga 312 | ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 242 attatgaaaaactacatgacactcagtatggaaggcacaggtgggtagaatatgcagaga 301 Query: 313 agggtcgctacaatgcgtcccaagtgcctgctgaatggcatggatggctgcaccacatta 372 | || ||||||||||| ||||||||||| |||||||||||||||||||||||||||| | Sbjct: 302 aagggcgctacaatgcatcccaagtgccccctgaatggcatggatggctgcaccacatca 361 Query: 373 cagacagcactggggacaagctgctggaggagaagactaaaaagttcattatggagcaca 432 | ||||||||||||||| |||| |||||| |||| ||||| || ||| |||| |||| Sbjct: 362 ccgacagcactggggacgagctactggagcagaatgctaaagcgtacatcgtggatcaca 421 Query: 433 gacagaactacactggacagggtgacgacttgatctaccactccaaggggcatgctctga 492 |||||| | | || ||||||| || |||||||||||||||||||||||||||| | Sbjct: 422 aggagaacttctccggcgagggtgaggaactgatctaccactccaaggggcatgctctaa 481 Query: 493 accctgggcaaagggactggacaaggtaccagccttgggaaccaaagaaagaagaggcca 552 |||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 482 acccaggacaaagggactggacgaggtaccagccgtgggaaccaaagaaagaagaggcaa 541 Query: 553 cct 555 ||| Sbjct: 542 cct 544
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 143 bits (72), Expect = 1e-30 Identities = 99/108 (91%) Strand = Plus / Minus Query: 282 ggaaggcataggtgggtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcct 341 |||||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 22581877 ggaaggcacaggtgggtagaatatgcagagaaagggcgctacaatgcatcccaagtgccc 22581818 Query: 342 gctgaatggcatggatggctgcaccacattacagacagcactggggac 389 |||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 22581817 cctgaatggcatggatggctgcaccacatcaccgacagcactggggac 22581770 Score = 137 bits (69), Expect = 7e-29 Identities = 87/93 (93%) Strand = Plus / Minus Query: 463 tgatctaccactccaaggggcatgctctgaaccctgggcaaagggactggacaaggtacc 522 |||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||| Sbjct: 22580324 tgatctaccactccaaggggcatgctctaaacccaggacaaagggactggacgaggtacc 22580265 Query: 523 agccttgggaaccaaagaaagaagaggccacct 555 |||| ||||||||||||||||||||||| |||| Sbjct: 22580264 agccgtgggaaccaaagaaagaagaggcaacct 22580232 Score = 67.9 bits (34), Expect = 5e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 73 ccatggccgcggtggttcggagcgtgtggcagggcatcaaggagaagggcctcgccaact 132 ||||||| |||||||| || |||||| | | |||||| ||||||||||||| |||||| Sbjct: 22582819 ccatggctgcggtggtgcgtggcgtgttgaacggcatccgggagaagggcctctccaact 22582760 Query: 133 tcctccgctacgcccgcgacga 154 |||||||| | ||||||||||| Sbjct: 22582759 tcctccgccatgcccgcgacga 22582738 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 191 gcaaaccaaaattcacaacattggtgcaacccttgtaggagttgacagttttggaaacaa 250 |||||| ||||| ||||| || || || || ||||||||||| |||| || || ||||| Sbjct: 22582282 gcaaactaaaatccacaatatcggcgccacacttgtaggagtagacaagttcggcaacaa 22582223 Query: 251 gtactatgagaaactacatgacactcagtatgg 283 || ||||| ||||||||||||||||||||||| Sbjct: 22582222 atattatgaaaaactacatgacactcagtatgg 22582190
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 143 bits (72), Expect = 1e-30 Identities = 99/108 (91%) Strand = Plus / Minus Query: 282 ggaaggcataggtgggtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcct 341 |||||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 36546 ggaaggcacaggtgggtagaatatgcagagaaagggcgctacaatgcatcccaagtgccc 36487 Query: 342 gctgaatggcatggatggctgcaccacattacagacagcactggggac 389 |||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 36486 cctgaatggcatggatggctgcaccacatcaccgacagcactggggac 36439 Score = 137 bits (69), Expect = 7e-29 Identities = 87/93 (93%) Strand = Plus / Minus Query: 463 tgatctaccactccaaggggcatgctctgaaccctgggcaaagggactggacaaggtacc 522 |||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||| Sbjct: 34993 tgatctaccactccaaggggcatgctctaaacccaggacaaagggactggacgaggtacc 34934 Query: 523 agccttgggaaccaaagaaagaagaggccacct 555 |||| ||||||||||||||||||||||| |||| Sbjct: 34933 agccgtgggaaccaaagaaagaagaggcaacct 34901 Score = 67.9 bits (34), Expect = 5e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 73 ccatggccgcggtggttcggagcgtgtggcagggcatcaaggagaagggcctcgccaact 132 ||||||| |||||||| || |||||| | | |||||| ||||||||||||| |||||| Sbjct: 37488 ccatggctgcggtggtgcgtggcgtgttgaacggcatccgggagaagggcctctccaact 37429 Query: 133 tcctccgctacgcccgcgacga 154 |||||||| | ||||||||||| Sbjct: 37428 tcctccgccatgcccgcgacga 37407 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 191 gcaaaccaaaattcacaacattggtgcaacccttgtaggagttgacagttttggaaacaa 250 |||||| ||||| ||||| || || || || ||||||||||| |||| || || ||||| Sbjct: 36951 gcaaactaaaatccacaatatcggcgccacacttgtaggagtagacaagttcggcaacaa 36892 Query: 251 gtactatgagaaactacatgacactcagtatgg 283 || ||||| ||||||||||||||||||||||| Sbjct: 36891 atattatgaaaaactacatgacactcagtatgg 36859
>gb|AC184097.2| Populus trichocarpa clone Pop1-88A18, complete sequence Length = 96720 Score = 63.9 bits (32), Expect = 8e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 191 gcaaaccaaaattcacaacattggtgcaacccttgtaggagttgacagttttggaaacaa 250 |||||||||||| |||||||||||||||| ||||| || ||||||| ||||| ||||| Sbjct: 13589 gcaaaccaaaatacacaacattggtgcaaagcttgttggcgttgacaaatttggtaacaa 13648 Query: 251 gtactatgagaa 262 ||| ||| |||| Sbjct: 13649 gtattatcagaa 13660 Score = 48.1 bits (24), Expect = 0.048 Identities = 66/80 (82%) Strand = Plus / Plus Query: 282 ggaaggcataggtgggtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcct 341 |||||||| ||||||| || || || |||||| ||||||||||||| || ||||| || Sbjct: 15710 ggaaggcaccggtgggttgaatacgccgagaagagtcgctacaatgcttctcaagtacca 15769 Query: 342 gctgaatggcatggatggct 361 | ||||||||||| ||||| Sbjct: 15770 ccagaatggcatggttggct 15789
>gb|AC183420.2| Populus trichocarpa clone Pop1-23K9, complete sequence Length = 145826 Score = 63.9 bits (32), Expect = 8e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 191 gcaaaccaaaattcacaacattggtgcaacccttgtaggagttgacagttttggaaacaa 250 |||||||||||| |||||||||||||||| ||||| || ||||||| ||||| ||||| Sbjct: 78584 gcaaaccaaaatacacaacattggtgcaaagcttgttggcgttgacaaatttggtaacaa 78525 Query: 251 gtactatgagaa 262 ||| ||| |||| Sbjct: 78524 gtattatcagaa 78513 Score = 48.1 bits (24), Expect = 0.048 Identities = 66/80 (82%) Strand = Plus / Minus Query: 282 ggaaggcataggtgggtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcct 341 |||||||| ||||||| || || || |||||| ||||||||||||| || ||||| || Sbjct: 76459 ggaaggcaccggtgggttgaatacgccgagaagagtcgctacaatgcttctcaagtacca 76400 Query: 342 gctgaatggcatggatggct 361 | ||||||||||| ||||| Sbjct: 76399 ccagaatggcatggttggct 76380
>gb|CP000158.1| Hyphomonas neptunium ATCC 15444, complete genome Length = 3705021 Score = 48.1 bits (24), Expect = 0.048 Identities = 33/36 (91%) Strand = Plus / Minus Query: 334 aagtgcctgctgaatggcatggatggctgcaccaca 369 |||||||||| || |||||||| ||||||||||||| Sbjct: 2354582 aagtgcctgcggactggcatggctggctgcaccaca 2354547
>emb|AL355592.11| Human DNA sequence from clone RP11-349E4 on chromosome 9 Contains a novel gene and a CpG island, complete sequence Length = 172445 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Plus Query: 525 ccttgggaaccaaagaaagaaga 547 ||||||||||||||||||||||| Sbjct: 119778 ccttgggaaccaaagaaagaaga 119800
>emb|CT983398.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 182 Score = 44.1 bits (22), Expect = 0.75 Identities = 43/50 (86%) Strand = Plus / Plus Query: 465 atctaccactccaaggggcatgctctgaaccctgggcaaagggactggac 514 ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct: 10 atctatcattccaagggacatgcgctgaatccagggcagagggactggac 59
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.75 Identities = 22/22 (100%) Strand = Plus / Plus Query: 210 attggtgcaacccttgtaggag 231 |||||||||||||||||||||| Sbjct: 4780049 attggtgcaacccttgtaggag 4780070
>emb|Z95328.1|HS447B16 Human DNA sequence from clone RP3-447B16 on chromosome Xq13.1-13.3, complete sequence Length = 93250 Score = 44.1 bits (22), Expect = 0.75 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 tactatgagaaactacatgaca 273 |||||||||||||||||||||| Sbjct: 52885 tactatgagaaactacatgaca 52906
>gb|AC004384.1|AC004384 Human Chromosome X clone bWXD531, complete sequence Length = 164675 Score = 44.1 bits (22), Expect = 0.75 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 tactatgagaaactacatgaca 273 |||||||||||||||||||||| Sbjct: 70172 tactatgagaaactacatgaca 70151
>gb|AC004385.1|AC004385 Human Chromosome X clone bWXD547, complete sequence Length = 177311 Score = 44.1 bits (22), Expect = 0.75 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 tactatgagaaactacatgaca 273 |||||||||||||||||||||| Sbjct: 7105 tactatgagaaactacatgaca 7126
>ref|NM_111180.2| Arabidopsis thaliana NADH dehydrogenase (ubiquinone)/ electron transporter/ oxidoreductase (AT3G03100) mRNA, complete cds Length = 709 Score = 42.1 bits (21), Expect = 2.9 Identities = 144/185 (77%) Strand = Plus / Plus Query: 177 gatggaaacctattgcaaaccaaaattcacaacattggtgcaacccttgtaggagttgac 236 ||||| ||||| |||||||| ||||| || ||||| || || || ||||| || |||||| Sbjct: 155 gatgggaacctcttgcaaactaaaatacataacataggagcgacacttgttggtgttgac 214 Query: 237 agttttggaaacaagtactatgagaaactacatgacactcagtatggaaggcataggtgg 296 | || || ||||| ||||| |||| ||| || ||||| || || ||||| || ||| Sbjct: 215 aagttcggtaacaaatactaccagaagctaggcgatactcaatacggtaggcacagatgg 274 Query: 297 gtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcctgctgaatggcatgga 356 ||||||||||| |||| ||| ||||| || || ||||| || ||||||||||| || Sbjct: 275 gtagagtatgcttcaaaggatcgttacaacgcatctcaagtaccagctgaatggcacggg 334 Query: 357 tggct 361 ||||| Sbjct: 335 tggct 339
>gb|AC149402.2| Phakopsora pachyrhizi clone JGIAFNA-61H18, complete sequence Length = 37448 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 ctctgaaccctgggcaaaggg 507 ||||||||||||||||||||| Sbjct: 24453 ctctgaaccctgggcaaaggg 24473
>gb|AC073111.8| Homo sapiens BAC clone RP11-511P7 from 7, complete sequence Length = 115003 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 537 aagaaagaagaggccacctga 557 ||||||||||||||||||||| Sbjct: 64282 aagaaagaagaggccacctga 64262
>ref|XM_387358.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07182.1) partial mRNA Length = 1338 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 aagggcctcgccaacttcctc 137 ||||||||||||||||||||| Sbjct: 244 aagggcctcgccaacttcctc 264
>gb|AY062979.1| Arabidopsis thaliana unknown protein (At3g03100) mRNA, complete cds Length = 511 Score = 42.1 bits (21), Expect = 2.9 Identities = 144/185 (77%) Strand = Plus / Plus Query: 177 gatggaaacctattgcaaaccaaaattcacaacattggtgcaacccttgtaggagttgac 236 ||||| ||||| |||||||| ||||| || ||||| || || || ||||| || |||||| Sbjct: 106 gatgggaacctcttgcaaactaaaatacataacataggagcgacacttgttggtgttgac 165 Query: 237 agttttggaaacaagtactatgagaaactacatgacactcagtatggaaggcataggtgg 296 | || || ||||| ||||| |||| ||| || ||||| || || ||||| || ||| Sbjct: 166 aagttcggtaacaaatactaccagaagctaggcgatactcaatacggtaggcacagatgg 225 Query: 297 gtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcctgctgaatggcatgga 356 ||||||||||| |||| ||| ||||| || || ||||| || ||||||||||| || Sbjct: 226 gtagagtatgcttcaaaggatcgttacaacgcatctcaagtaccagctgaatggcacggg 285 Query: 357 tggct 361 ||||| Sbjct: 286 tggct 290
>gb|AC165066.2| Phakopsora pachyrhizi clone JGIAFNA-401O2, complete sequence Length = 39855 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ctctgaaccctgggcaaaggg 507 ||||||||||||||||||||| Sbjct: 35304 ctctgaaccctgggcaaaggg 35284
>gb|AC165051.2| Phakopsora pachyrhizi clone JGIAFNA-1077C21, complete sequence Length = 35591 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 ctctgaaccctgggcaaaggg 507 ||||||||||||||||||||| Sbjct: 1829 ctctgaaccctgggcaaaggg 1849
>gb|AF370349.1| Arabidopsis thaliana unknown protein (At3g03100) mRNA, complete cds Length = 720 Score = 42.1 bits (21), Expect = 2.9 Identities = 144/185 (77%) Strand = Plus / Plus Query: 177 gatggaaacctattgcaaaccaaaattcacaacattggtgcaacccttgtaggagttgac 236 ||||| ||||| |||||||| ||||| || ||||| || || || ||||| || |||||| Sbjct: 147 gatgggaacctcttgcaaactaaaatacataacataggagcgacacttgttggtgttgac 206 Query: 237 agttttggaaacaagtactatgagaaactacatgacactcagtatggaaggcataggtgg 296 | || || ||||| ||||| |||| ||| || ||||| || || ||||| || ||| Sbjct: 207 aagttcggtaacaaatactaccagaagctaggcgatactcaatacggtaggcacagatgg 266 Query: 297 gtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcctgctgaatggcatgga 356 ||||||||||| |||| ||| ||||| || || ||||| || ||||||||||| || Sbjct: 267 gtagagtatgcttcaaaggatcgttacaacgcatctcaagtaccagctgaatggcacggg 326 Query: 357 tggct 361 ||||| Sbjct: 327 tggct 331
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 668 atgtactatatctgatactga 688 ||||||||||||||||||||| Sbjct: 25795245 atgtactatatctgatactga 25795225
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 523 agccttgggaaccaaagaaagaaga 547 |||||| |||||||||||||||||| Sbjct: 18352990 agccttaggaaccaaagaaagaaga 18353014
>dbj|AB110451.1| Comamonas testosteroni bphC gene for 2,3-dihydroxybiphenyl 1,2-dioxygenase, partial cds, strain: KF704 Length = 1170 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 catcaaggagaagggcctcgccaacttcc 135 |||||| |||||||||||| ||||||||| Sbjct: 1107 catcaacgagaagggcctctccaacttcc 1135
>gb|AY087701.1| Arabidopsis thaliana clone 37796 mRNA, complete sequence Length = 702 Score = 42.1 bits (21), Expect = 2.9 Identities = 144/185 (77%) Strand = Plus / Plus Query: 177 gatggaaacctattgcaaaccaaaattcacaacattggtgcaacccttgtaggagttgac 236 ||||| ||||| |||||||| ||||| || ||||| || || || ||||| || |||||| Sbjct: 148 gatgggaacctcttgcaaactaaaatacataacataggagcgacacttgttggtgttgac 207 Query: 237 agttttggaaacaagtactatgagaaactacatgacactcagtatggaaggcataggtgg 296 | || || ||||| ||||| |||| ||| || ||||| || || ||||| || ||| Sbjct: 208 aagttcggtaacaaatactaccagaagctaggcgatactcaatacggtaggcacagatgg 267 Query: 297 gtagagtatgcagagaagggtcgctacaatgcgtcccaagtgcctgctgaatggcatgga 356 ||||||||||| |||| ||| ||||| || || ||||| || ||||||||||| || Sbjct: 268 gtagagtatgcttcaaaggatcgttacaacgcatctcaagtaccagctgaatggcacggg 327 Query: 357 tggct 361 ||||| Sbjct: 328 tggct 332
>emb|AJ539227.1|RSP539227 Ralstonia sp. SBUG 290 bphBCD gene cluster (bphB, bphC, bphD) and flanking ORF1 Length = 3252 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 catcaaggagaagggcctcgccaacttcc 135 |||||| |||||||||||| ||||||||| Sbjct: 1854 catcaacgagaagggcctctccaacttcc 1882
>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1108H10 Length = 136357 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 523 agccttgggaaccaaagaaagaaga 547 |||||| |||||||||||||||||| Sbjct: 110324 agccttaggaaccaaagaaagaaga 110348
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G03 Length = 106401 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 668 atgtactatatctgatactga 688 ||||||||||||||||||||| Sbjct: 41851 atgtactatatctgatactga 41831
>dbj|AK110856.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D01, full insert sequence Length = 1457 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 668 atgtactatatctgatactga 688 ||||||||||||||||||||| Sbjct: 1394 atgtactatatctgatactga 1414
>gb|AC137743.3| Mus musculus BAC clone RP24-469M15 from 6, complete sequence Length = 170200 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 645 gtttcatggactggacctgaa 665 ||||||||||||||||||||| Sbjct: 103516 gtttcatggactggacctgaa 103496
>gb|M26433.1|PSEBPHCD Pseudomonas sp. 2,3-dihydroxybiphenyl dioxygenase (bphC) and 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (bphD) genes, complete cds Length = 2124 Score = 42.1 bits (21), Expect = 2.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 107 catcaaggagaagggcctcgccaacttcc 135 |||||| |||||||||||| ||||||||| Sbjct: 1176 catcaacgagaagggcctctccaacttcc 1204 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 137,398,079 Number of extensions: 7382388 Number of successful extensions: 140713 Number of sequences better than 10.0: 34 Number of HSP's gapped: 140709 Number of HSP's successfully gapped: 47 Length of query: 784 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 762 Effective length of database: 18,508,616,841 Effective search space: 14103566032842 Effective search space used: 14103566032842 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)