ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf177g16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC127142.3| Rattus norvegicus 4 BAC CH230-41K13 (Children's H... 46 0.10
2gb|AC161245.2| Mus musculus BAC clone RP24-394N21 from chromosom... 44 0.40
3emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 44 0.40
4emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chr... 44 0.40
5emb|CT025607.9| Mouse DNA sequence from clone RP23-451F18 on chr... 44 0.40
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
7dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
8dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
9ref|XM_719146.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 1.6
10emb|CT485660.1| Leptosphaeria maculans : genomic region surround... 40 6.2
11emb|CT485658.1| Leptosphaeria maculans : genomic region surround... 40 6.2
12emb|CT485648.1| Leptosphaeria maculans : genomic region surround... 40 6.2
13emb|CR854891.10| Zebrafish DNA sequence from clone DKEY-52P2, co... 40 6.2
14ref|XM_001168200.1| PREDICTED: Pan troglodytes similar to pro-al... 40 6.2
15emb|CT485789.1| Leptosphaeria maculans : genomic region surround... 40 6.2
16emb|CT485668.1| Leptosphaeria maculans : genomic region surround... 40 6.2
17gb|AC151369.4| Aotus nancymaae clone CH258-279B4, complete sequence 40 6.2
18gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, co... 40 6.2
19gb|AC164437.2| Mus musculus BAC clone RP23-105B9 from chromosome... 40 6.2
20gb|AC004537.1| Homo sapiens PAC clone RP5-872F7 from 7, complete... 40 6.2
21emb|CT010448.4| Mouse DNA sequence from clone RP23-290P4 on chro... 40 6.2
22dbj|AK048074.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 6.2
23emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E... 40 6.2
24gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, comp... 40 6.2
25emb|AL645963.9| Mouse DNA sequence from clone RP23-76C16 on chro... 40 6.2

>gb|AC127142.3| Rattus norvegicus 4 BAC CH230-41K13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 238669
 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 365   atgaaaaaaaaagaaggtaatac 387
             |||||||||||||||||||||||
Sbjct: 99110 atgaaaaaaaaagaaggtaatac 99132



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>gb|AC161245.2| Mus musculus BAC clone RP24-394N21 from chromosome 9, complete sequence
          Length = 177389

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 368   aaaaaaaaagaaggtaatacta 389
             ||||||||||||||||||||||
Sbjct: 77972 aaaaaaaaagaaggtaatacta 77951



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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 361   agcaatgaaaaaaaaagaaggtaata 386
             ||||||||||||| ||||||||||||
Sbjct: 93407 agcaatgaaaaaacaagaaggtaata 93432



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>emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chromosome 11 Contains a
             novel gene, a glyoxalase 1 (Glo1) pseudogene and a
             pseudogene similar to part of nuclear pore membrane
             protein 121 Pom121, complete sequence
          Length = 212255

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 367   gaaaaaaaaagaaggtaatact 388
             ||||||||||||||||||||||
Sbjct: 86236 gaaaaaaaaagaaggtaatact 86215



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>emb|CT025607.9| Mouse DNA sequence from clone RP23-451F18 on chromosome 9, complete
             sequence
          Length = 187876

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 368   aaaaaaaaagaaggtaatacta 389
             ||||||||||||||||||||||
Sbjct: 24955 aaaaaaaaagaaggtaatacta 24934



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 366    tgaaaaaaaaagaaggtaata 386
              |||||||||||||||||||||
Sbjct: 809840 tgaaaaaaaaagaaggtaata 809820



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>dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0463F06
          Length = 144322

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 366   tgaaaaaaaaagaaggtaata 386
             |||||||||||||||||||||
Sbjct: 32514 tgaaaaaaaaagaaggtaata 32494



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>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1212_B09
          Length = 130728

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 366   tgaaaaaaaaagaaggtaata 386
             |||||||||||||||||||||
Sbjct: 87040 tgaaaaaaaaagaaggtaata 87020



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>ref|XM_719146.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03999)
           partial mRNA
          Length = 3086

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 gaagcaatgaaaaaaaaagaa 379
           |||||||||||||||||||||
Sbjct: 817 gaagcaatgaaaaaaaaagaa 837



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>emb|CT485660.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1 (AM084345)
          Length = 57120

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   agaaggtaatactagtagca 395
             ||||||||||||||||||||
Sbjct: 32902 agaaggtaatactagtagca 32921



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>emb|CT485658.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1 (AM084345)
          Length = 119405

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   agaaggtaatactagtagca 395
             ||||||||||||||||||||
Sbjct: 85590 agaaggtaatactagtagca 85571



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>emb|CT485648.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1 (AM084345)
          Length = 83892

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   agaaggtaatactagtagca 395
             ||||||||||||||||||||
Sbjct: 16092 agaaggtaatactagtagca 16073



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>emb|CR854891.10| Zebrafish DNA sequence from clone DKEY-52P2, complete sequence
          Length = 135337

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    aagcaatgaaaaaaaaagaa 379
              ||||||||||||||||||||
Sbjct: 109624 aagcaatgaaaaaaaaagaa 109605



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>ref|XM_001168200.1| PREDICTED: Pan troglodytes similar to pro-alpha-1 type V collagen
            (LOC749375), partial mRNA
          Length = 2741

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   ggcagagggaggagccgtgc 82
            ||||||||||||||||||||
Sbjct: 1577 ggcagagggaggagccgtgc 1596



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>emb|CT485789.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene
             AvrLm1 (AM084345)
          Length = 85662

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   agaaggtaatactagtagca 395
             ||||||||||||||||||||
Sbjct: 53377 agaaggtaatactagtagca 53396



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>emb|CT485668.1| Leptosphaeria maculans : genomic region surrounding the avirulence
            gene AvrLm1 (AM084345)
          Length = 100390

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 376  agaaggtaatactagtagca 395
            ||||||||||||||||||||
Sbjct: 8678 agaaggtaatactagtagca 8697



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>gb|AC151369.4| Aotus nancymaae clone CH258-279B4, complete sequence
          Length = 196485

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   aaaaaaaaagaaggtaatac 387
             ||||||||||||||||||||
Sbjct: 89373 aaaaaaaaagaaggtaatac 89392



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>gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, complete sequence
          Length = 175586

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 366  tgaaaaaaaaagaaggtaat 385
            ||||||||||||||||||||
Sbjct: 6583 tgaaaaaaaaagaaggtaat 6564



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>gb|AC164437.2| Mus musculus BAC clone RP23-105B9 from chromosome 14, complete sequence
          Length = 205044

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    atgaaaaaaaaagaaggtaa 384
              ||||||||||||||||||||
Sbjct: 190884 atgaaaaaaaaagaaggtaa 190903



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>gb|AC004537.1| Homo sapiens PAC clone RP5-872F7 from 7, complete sequence
          Length = 88872

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gcaatgaaaaaaaaagaagg 381
             ||||||||||||||||||||
Sbjct: 49743 gcaatgaaaaaaaaagaagg 49724



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>emb|CT010448.4| Mouse DNA sequence from clone RP23-290P4 on chromosome 17, complete
             sequence
          Length = 136671

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   aagcaatgaaaaaaaaagaa 379
             ||||||||||||||||||||
Sbjct: 54473 aagcaatgaaaaaaaaagaa 54454



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>dbj|AK048074.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130033C08 product:unclassifiable, full
            insert sequence
          Length = 3730

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  acggccaaggttggtgattc 287
            ||||||||||||||||||||
Sbjct: 3514 acggccaaggttggtgattc 3495



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>emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E23 on chromosome 6q22.33-24.1
             Contains part of the gene for a novel protein, a novel
             gene and a CpG Island, complete sequence
          Length = 98828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   aaaaaaaagaaggtaatact 388
             ||||||||||||||||||||
Sbjct: 89580 aaaaaaaagaaggtaatact 89599



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>gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, complete sequence
          Length = 172583

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    tgaaaaaaaaagaaggtaat 385
              ||||||||||||||||||||
Sbjct: 120346 tgaaaaaaaaagaaggtaat 120327



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>emb|AL645963.9| Mouse DNA sequence from clone RP23-76C16 on chromosome 11, complete
             sequence
          Length = 176154

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   acggccaaggttggtgattc 287
             ||||||||||||||||||||
Sbjct: 90635 acggccaaggttggtgattc 90654


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 85,024,987
Number of extensions: 5028523
Number of successful extensions: 451277
Number of sequences better than 10.0: 25
Number of HSP's gapped: 451277
Number of HSP's successfully gapped: 25
Length of query: 429
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 407
Effective length of database: 18,508,616,841
Effective search space: 7533007054287
Effective search space used: 7533007054287
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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