| Clone Name | FLbaf177g16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC127142.3| Rattus norvegicus 4 BAC CH230-41K13 (Children's Hospital Oakland Research Institute) complete sequence Length = 238669 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 365 atgaaaaaaaaagaaggtaatac 387 ||||||||||||||||||||||| Sbjct: 99110 atgaaaaaaaaagaaggtaatac 99132
>gb|AC161245.2| Mus musculus BAC clone RP24-394N21 from chromosome 9, complete sequence Length = 177389 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 368 aaaaaaaaagaaggtaatacta 389 |||||||||||||||||||||| Sbjct: 77972 aaaaaaaaagaaggtaatacta 77951
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 361 agcaatgaaaaaaaaagaaggtaata 386 ||||||||||||| |||||||||||| Sbjct: 93407 agcaatgaaaaaacaagaaggtaata 93432
>emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chromosome 11 Contains a novel gene, a glyoxalase 1 (Glo1) pseudogene and a pseudogene similar to part of nuclear pore membrane protein 121 Pom121, complete sequence Length = 212255 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 367 gaaaaaaaaagaaggtaatact 388 |||||||||||||||||||||| Sbjct: 86236 gaaaaaaaaagaaggtaatact 86215
>emb|CT025607.9| Mouse DNA sequence from clone RP23-451F18 on chromosome 9, complete sequence Length = 187876 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 368 aaaaaaaaagaaggtaatacta 389 |||||||||||||||||||||| Sbjct: 24955 aaaaaaaaagaaggtaatacta 24934
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 tgaaaaaaaaagaaggtaata 386 ||||||||||||||||||||| Sbjct: 809840 tgaaaaaaaaagaaggtaata 809820
>dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463F06 Length = 144322 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 tgaaaaaaaaagaaggtaata 386 ||||||||||||||||||||| Sbjct: 32514 tgaaaaaaaaagaaggtaata 32494
>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1212_B09 Length = 130728 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 tgaaaaaaaaagaaggtaata 386 ||||||||||||||||||||| Sbjct: 87040 tgaaaaaaaaagaaggtaata 87020
>ref|XM_719146.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03999) partial mRNA Length = 3086 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 359 gaagcaatgaaaaaaaaagaa 379 ||||||||||||||||||||| Sbjct: 817 gaagcaatgaaaaaaaaagaa 837
>emb|CT485660.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1 (AM084345) Length = 57120 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 agaaggtaatactagtagca 395 |||||||||||||||||||| Sbjct: 32902 agaaggtaatactagtagca 32921
>emb|CT485658.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1 (AM084345) Length = 119405 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 agaaggtaatactagtagca 395 |||||||||||||||||||| Sbjct: 85590 agaaggtaatactagtagca 85571
>emb|CT485648.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1 (AM084345) Length = 83892 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 agaaggtaatactagtagca 395 |||||||||||||||||||| Sbjct: 16092 agaaggtaatactagtagca 16073
>emb|CR854891.10| Zebrafish DNA sequence from clone DKEY-52P2, complete sequence Length = 135337 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 aagcaatgaaaaaaaaagaa 379 |||||||||||||||||||| Sbjct: 109624 aagcaatgaaaaaaaaagaa 109605
>ref|XM_001168200.1| PREDICTED: Pan troglodytes similar to pro-alpha-1 type V collagen (LOC749375), partial mRNA Length = 2741 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ggcagagggaggagccgtgc 82 |||||||||||||||||||| Sbjct: 1577 ggcagagggaggagccgtgc 1596
>emb|CT485789.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1 (AM084345) Length = 85662 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 agaaggtaatactagtagca 395 |||||||||||||||||||| Sbjct: 53377 agaaggtaatactagtagca 53396
>emb|CT485668.1| Leptosphaeria maculans : genomic region surrounding the avirulence gene AvrLm1 (AM084345) Length = 100390 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 agaaggtaatactagtagca 395 |||||||||||||||||||| Sbjct: 8678 agaaggtaatactagtagca 8697
>gb|AC151369.4| Aotus nancymaae clone CH258-279B4, complete sequence Length = 196485 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 aaaaaaaaagaaggtaatac 387 |||||||||||||||||||| Sbjct: 89373 aaaaaaaaagaaggtaatac 89392
>gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, complete sequence Length = 175586 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgaaaaaaaaagaaggtaat 385 |||||||||||||||||||| Sbjct: 6583 tgaaaaaaaaagaaggtaat 6564
>gb|AC164437.2| Mus musculus BAC clone RP23-105B9 from chromosome 14, complete sequence Length = 205044 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 atgaaaaaaaaagaaggtaa 384 |||||||||||||||||||| Sbjct: 190884 atgaaaaaaaaagaaggtaa 190903
>gb|AC004537.1| Homo sapiens PAC clone RP5-872F7 from 7, complete sequence Length = 88872 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcaatgaaaaaaaaagaagg 381 |||||||||||||||||||| Sbjct: 49743 gcaatgaaaaaaaaagaagg 49724
>emb|CT010448.4| Mouse DNA sequence from clone RP23-290P4 on chromosome 17, complete sequence Length = 136671 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 aagcaatgaaaaaaaaagaa 379 |||||||||||||||||||| Sbjct: 54473 aagcaatgaaaaaaaaagaa 54454
>dbj|AK048074.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130033C08 product:unclassifiable, full insert sequence Length = 3730 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 acggccaaggttggtgattc 287 |||||||||||||||||||| Sbjct: 3514 acggccaaggttggtgattc 3495
>emb|AL049552.20|HSJ388E23 Human DNA sequence from clone RP3-388E23 on chromosome 6q22.33-24.1 Contains part of the gene for a novel protein, a novel gene and a CpG Island, complete sequence Length = 98828 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aaaaaaaagaaggtaatact 388 |||||||||||||||||||| Sbjct: 89580 aaaaaaaagaaggtaatact 89599
>gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, complete sequence Length = 172583 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tgaaaaaaaaagaaggtaat 385 |||||||||||||||||||| Sbjct: 120346 tgaaaaaaaaagaaggtaat 120327
>emb|AL645963.9| Mouse DNA sequence from clone RP23-76C16 on chromosome 11, complete sequence Length = 176154 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 acggccaaggttggtgattc 287 |||||||||||||||||||| Sbjct: 90635 acggccaaggttggtgattc 90654 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 85,024,987 Number of extensions: 5028523 Number of successful extensions: 451277 Number of sequences better than 10.0: 25 Number of HSP's gapped: 451277 Number of HSP's successfully gapped: 25 Length of query: 429 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 407 Effective length of database: 18,508,616,841 Effective search space: 7533007054287 Effective search space used: 7533007054287 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)