| Clone Name | FLbaf177f14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001072569.1| Oryza sativa (japonica cultivar-group) Os12g0124000 (Os12g0124000) mRNA, complete cds Length = 1024 Score = 83.8 bits (42), Expect = 1e-12 Identities = 87/102 (85%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || ||||||||| |||| Sbjct: 478 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcctgttggta 537 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 538 acagacctggagagcacgaatggcacctacatcaacgagagg 579 Score = 61.9 bits (31), Expect = 4e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 338 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 397 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 398 gacccggcggcttccagatagcatccg 424
>dbj|AK104144.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A12, full insert sequence Length = 997 Score = 83.8 bits (42), Expect = 1e-12 Identities = 87/102 (85%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || ||||||||| |||| Sbjct: 520 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcctgttggta 579 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 580 acagacctggagagcacgaatggcacctacatcaacgagagg 621 Score = 61.9 bits (31), Expect = 4e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 380 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 439 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 440 gacccggcggcttccagatagcatccg 466
>dbj|AK060098.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G12, full insert sequence Length = 1024 Score = 83.8 bits (42), Expect = 1e-12 Identities = 87/102 (85%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || ||||||||| |||| Sbjct: 478 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcctgttggta 537 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 538 acagacctggagagcacgaatggcacctacatcaacgagagg 579 Score = 61.9 bits (31), Expect = 4e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 338 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 397 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 398 gacccggcggcttccagatagcatccg 424
>dbj|AK059861.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-C05, full insert sequence Length = 937 Score = 83.8 bits (42), Expect = 1e-12 Identities = 87/102 (85%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || ||||||||| |||| Sbjct: 574 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcctgttggta 633 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 634 acagacctggagagcacgaatggcacctacatcaacgagagg 675 Score = 61.9 bits (31), Expect = 4e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 434 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 493 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 494 gacccggcggcttccagatagcatccg 520
>dbj|AK059321.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H08, full insert sequence Length = 974 Score = 83.8 bits (42), Expect = 1e-12 Identities = 87/102 (85%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || ||||||||| |||| Sbjct: 431 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcctgttggta 490 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 491 acagacctggagagcacgaatggcacctacatcaacgagagg 532 Score = 61.9 bits (31), Expect = 4e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 291 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcgc 350 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 351 gacccggcggcttccagatagcatccg 377
>gb|AY107133.1| Zea mays PCO086632 mRNA sequence Length = 817 Score = 83.8 bits (42), Expect = 1e-12 Identities = 120/146 (82%) Strand = Plus / Minus Query: 508 agcctggtggttacggacatggacagcaccaacggcacctacgttaacgagaggaagctg 567 |||||| |||| |||||| ||||||||||||||||||||||| | |||||| | ||| Sbjct: 809 agcctgctggtgacggacctggacagcaccaacggcacctacatcaacgagcgccggctc 750 Query: 568 gtgccgggattcccagtcgccgtccaacccgggagcctgctcatcttcggtgacatccac 627 ||||| ||||| | ||||| | ||||| ||||| ||||||||||||||||||||| Sbjct: 749 aacccgggcttccccgcgtccgtcgaccccggcagcctactcatcttcggtgacatccac 690 Query: 628 ttggcaatgtttcgggttaggaagac 653 ||||| ||||| || || |||||||| Sbjct: 689 ttggccatgttccgtgtaaggaagac 664
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 77.8 bits (39), Expect = 6e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 467 cagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggttacggaca 526 ||||||||||| |||||| |||||||||||||| || ||||||||| |||| || ||| Sbjct: 1156697 cagtttctgggacgcacgcacggctggagaagaaagaggggagcctgttggtaacagacc 1156756 Query: 527 tggacagcaccaacggcacctacgttaacgagagg 561 |||| ||||| || ||||||||| | ||||||||| Sbjct: 1156757 tggagagcacgaatggcacctacatcaacgagagg 1156791 Score = 44.1 bits (22), Expect = 0.85 Identities = 58/70 (82%) Strand = Plus / Plus Query: 322 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 381 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 1156315 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 1156374 Query: 382 atcgcatccg 391 || ||||||| Sbjct: 1156375 atagcatccg 1156384
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 77.8 bits (39), Expect = 6e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 467 cagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggttacggaca 526 ||||||||||| |||||| |||||||||||||| || ||||||||| |||| || ||| Sbjct: 95680 cagtttctgggacgcacgcacggctggagaagaaagaggggagcctgttggtaacagacc 95739 Query: 527 tggacagcaccaacggcacctacgttaacgagagg 561 |||| ||||| || ||||||||| | ||||||||| Sbjct: 95740 tggagagcacgaatggcacctacatcaacgagagg 95774 Score = 44.1 bits (22), Expect = 0.85 Identities = 58/70 (82%) Strand = Plus / Plus Query: 322 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 381 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 95298 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 95357 Query: 382 atcgcatccg 391 || ||||||| Sbjct: 95358 atagcatccg 95367
>dbj|AK240997.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065053A12, full insert sequence Length = 4251 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || |||||| || |||| Sbjct: 431 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggta 490 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 491 acagacctggagagcacgaatggcacctacatcaacgagagg 532 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 291 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 350 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 351 gacccggcggcttccagatagcatccg 377 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 595 cccgggagcctgctcatcttcggtgacatccacttggcaatgtt 638 ||||| ||||| |||||||| |||||||||||| |||| ||||| Sbjct: 566 cccggcagcctcctcatctttggtgacatccacctggccatgtt 609
>ref|NM_001072163.1| Oryza sativa (japonica cultivar-group) Os11g0127800 (Os11g0127800) mRNA, complete cds Length = 1051 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || |||||| || |||| Sbjct: 506 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggta 565 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 566 acagacctggagagcacgaatggcacctacatcaacgagagg 607 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 366 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 425 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 426 gacccggcggcttccagatagcatccg 452 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 595 cccgggagcctgctcatcttcggtgacatccacttggcaatgtt 638 ||||| ||||| |||||||| |||||||||||| |||| ||||| Sbjct: 641 cccggcagcctcctcatctttggtgacatccacctggccatgtt 684
>dbj|AK104250.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H05, full insert sequence Length = 979 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || |||||| || |||| Sbjct: 446 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggta 505 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 506 acagacctggagagcacgaatggcacctacatcaacgagagg 547 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 306 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 365 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 366 gacccggcggcttccagatagcatccg 392 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 595 cccgggagcctgctcatcttcggtgacatccacttggcaatgtt 638 ||||| ||||| |||||||| |||||||||||| |||| ||||| Sbjct: 581 cccggcagcctcctcatctttggtgacatccacctggccatgtt 624
>dbj|AK104179.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G06, full insert sequence Length = 974 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || |||||| || |||| Sbjct: 497 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggta 556 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 557 acagacctggagagcacgaatggcacctacatcaacgagagg 598 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 357 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 416 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 417 gacccggcggcttccagatagcatccg 443 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 595 cccgggagcctgctcatcttcggtgacatccacttggcaatgtt 638 ||||| ||||| |||||||| |||||||||||| |||| ||||| Sbjct: 632 cccggcagcctcctcatctttggtgacatccacctggccatgtt 675
>dbj|AK104015.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F09, full insert sequence Length = 969 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || |||||| || |||| Sbjct: 446 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggta 505 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 506 acagacctggagagcacgaatggcacctacatcaacgagagg 547 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 306 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 365 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 366 gacccggcggcttccagatagcatccg 392 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 595 cccgggagcctgctcatcttcggtgacatccacttggcaatgtt 638 ||||| ||||| |||||||| |||||||||||| |||| ||||| Sbjct: 581 cccggcagcctcctcatctttggtgacatccacctggccatgtt 624
>dbj|AK059969.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G08, full insert sequence Length = 1048 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 460 gtcgcgacagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggtt 519 ||||| |||||||||||| |||||| |||||||||||||| || |||||| || |||| Sbjct: 503 gtcgcaacagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggta 562 Query: 520 acggacatggacagcaccaacggcacctacgttaacgagagg 561 || ||| |||| ||||| || ||||||||| | ||||||||| Sbjct: 563 acagacctggagagcacgaatggcacctacatcaacgagagg 604 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 363 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 422 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 423 gacccggcggcttccagatagcatccg 449 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 595 cccgggagcctgctcatcttcggtgacatccacttggcaatgtt 638 ||||| ||||| |||||||| |||||||||||| |||| ||||| Sbjct: 638 cccggcagcctcctcatctttggtgacatccacctggccatgtt 681
>emb|CT830385.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN018C19, full insert sequence Length = 1064 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 467 cagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggttacggaca 526 ||||||||||| |||||| |||||||||||||| || |||||| || |||| || ||| Sbjct: 532 cagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggtaacagacc 591 Query: 527 tggacagcaccaacggcacctacgttaacgagagg 561 |||| ||||| || ||||||||| | ||||||||| Sbjct: 592 tggagagcacgaatggcacctacatcaacgagagg 626 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 358 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 417 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 418 gacccggcggcttccagatagcatccg 444 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 595 cccgggagcctgctcatcttcggtgacatccacttggcaatgtt 638 ||||| ||||| |||||||| |||||||||||| |||| ||||| Sbjct: 660 cccggcagcctcctcatctttggtgacatccacctggccatgtt 703
>emb|CT829210.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN024D07, full insert sequence Length = 976 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 467 cagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggttacggaca 526 ||||||||||| |||||| |||||||||||||| || |||||| || |||| || ||| Sbjct: 561 cagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggtaacagacc 620 Query: 527 tggacagcaccaacggcacctacgttaacgagagg 561 |||| ||||| || ||||||||| | ||||||||| Sbjct: 621 tggagagcacgaatggcacctacatcaacgagagg 655 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 287 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 346 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 347 gacccggcggcttccagatagcatccg 373 Score = 48.1 bits (24), Expect = 0.055 Identities = 39/44 (88%) Strand = Plus / Plus Query: 595 cccgggagcctgctcatcttcggtgacatccacttggcaatgtt 638 ||||| ||||| |||||||| |||||||||||| |||| ||||| Sbjct: 689 cccggcagcctcctcatctttggtgacatccacctggccatgtt 732
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 467 cagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggttacggaca 526 ||||||||||| |||||| |||||||||||||| || |||||| || |||| || ||| Sbjct: 108315 cagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggtaacagacc 108256 Query: 527 tggacagcaccaacggcacctacgttaacgagagg 561 |||| ||||| || ||||||||| | ||||||||| Sbjct: 108255 tggagagcacgaatggcacctacatcaacgagagg 108221 Score = 44.1 bits (22), Expect = 0.85 Identities = 58/70 (82%) Strand = Plus / Minus Query: 322 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 381 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 108696 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 108637 Query: 382 atcgcatccg 391 || ||||||| Sbjct: 108636 atagcatccg 108627
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 467 cagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggttacggaca 526 ||||||||||| |||||| |||||||||||||| || |||||| || |||| || ||| Sbjct: 1282300 cagtttctgggacgcacgcacggctggagaagaaagaggggagcttgttggtaacagacc 1282359 Query: 527 tggacagcaccaacggcacctacgttaacgagagg 561 |||| ||||| || ||||||||| | ||||||||| Sbjct: 1282360 tggagagcacgaatggcacctacatcaacgagagg 1282394 Score = 44.1 bits (22), Expect = 0.85 Identities = 58/70 (82%) Strand = Plus / Plus Query: 322 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 381 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 1281919 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 1281978 Query: 382 atcgcatccg 391 || ||||||| Sbjct: 1281979 atagcatccg 1281988
>emb|CT827976.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104O10, full insert sequence Length = 1159 Score = 61.9 bits (31), Expect = 4e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 278 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 337 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 338 gacccggcggcttccagatagcatccg 364 Score = 54.0 bits (27), Expect = 9e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 467 cagtttctggggtgcacgctcggctggagaagaaggatgggagcctggtggttacggaca 526 ||||||||||| ||||| || |||||||||| || ||||||||| |||| || ||| Sbjct: 560 cagtttctgggacgcacgacgggttggagaagaaagaggggagcctgttggtaactgacc 619 Query: 527 tggacagcaccaacggcacctacgttaacgagagg 561 |||| ||||| || ||||||||| | ||||||||| Sbjct: 620 tggagagcacgaatggcacctacatcaacgagagg 654
>dbj|AK059747.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-A02, full insert sequence Length = 923 Score = 61.9 bits (31), Expect = 4e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 364 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 279 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 338 Query: 365 ggcccggcgccatcgagatcgcatccg 391 | ||||||| | || |||| ||||||| Sbjct: 339 gacccggcggcttccagatagcatccg 365
>gb|DQ245891.1| Zea mays clone 21903 mRNA sequence Length = 898 Score = 54.0 bits (27), Expect = 9e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 607 ctcatcttcggtgacatccacttggcaatgtttcgggttaggaagac 653 ||||| |||||||||||||||||||| ||||| || || |||||||| Sbjct: 616 ctcatgttcggtgacatccacttggccatgttccgtgtaaggaagac 662 Score = 48.1 bits (24), Expect = 0.055 Identities = 60/72 (83%) Strand = Plus / Plus Query: 487 cggctggagaagaaggatgggagcctggtggttacggacatggacagcaccaacggcacc 546 |||||||||||||||| || ||||| |||| ||||| |||||||||||||||||| Sbjct: 496 cggctggagaagaagggcggcagcctcctggtgccggaccgagacagcaccaacggcacc 555 Query: 547 tacgttaacgag 558 ||| | |||||| Sbjct: 556 tacatcaacgag 567 Score = 44.1 bits (22), Expect = 0.85 Identities = 43/50 (86%) Strand = Plus / Plus Query: 305 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctac 354 ||||| |||| || || ||||||||||| |||||| ||||||||||||| Sbjct: 326 gatgggttctcgaccctgcaggagacggtgactggcgacacatcggctac 375
>emb|CT829959.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046B01, full insert sequence Length = 682 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 gagcacaagaagaagcagcagca 241 ||||||||||||||||||||||| Sbjct: 96 gagcacaagaagaagcagcagca 118
>emb|CT829958.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA059H13, full insert sequence Length = 685 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 gagcacaagaagaagcagcagca 241 ||||||||||||||||||||||| Sbjct: 79 gagcacaagaagaagcagcagca 101
>ref|NM_001066828.1| Oryza sativa (japonica cultivar-group) Os07g0619400 (Os07g0619400) mRNA, complete cds Length = 731 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 gagcacaagaagaagcagcagca 241 ||||||||||||||||||||||| Sbjct: 96 gagcacaagaagaagcagcagca 118
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 gagcacaagaagaagcagcagca 241 ||||||||||||||||||||||| Sbjct: 25531543 gagcacaagaagaagcagcagca 25531565 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 cgcgtcgcccggcccggcgcc 375 ||||||||||||||||||||| Sbjct: 7533441 cgcgtcgcccggcccggcgcc 7533461
>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0560B08 Length = 128098 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 gagcacaagaagaagcagcagca 241 ||||||||||||||||||||||| Sbjct: 68813 gagcacaagaagaagcagcagca 68835
>dbj|AK062716.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C08, full insert sequence Length = 731 Score = 46.1 bits (23), Expect = 0.22 Identities = 23/23 (100%) Strand = Plus / Plus Query: 219 gagcacaagaagaagcagcagca 241 ||||||||||||||||||||||| Sbjct: 96 gagcacaagaagaagcagcagca 118
>ref|XM_508745.2| PREDICTED: Pan troglodytes hypothetical LOC451535 (LOC451535), mRNA Length = 5934 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 gtgctcctccgcctccaccggcagcc 280 |||||||||||||||||||| ||||| Sbjct: 877 gtgctcctccgcctccaccgccagcc 902
>ref|XM_001104735.1| PREDICTED: Macaca mulatta hypothetical protein LOC708608 (LOC708608), mRNA Length = 5949 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 gtgctcctccgcctccaccggcagcc 280 |||||||||||||||||||| ||||| Sbjct: 876 gtgctcctccgcctccaccgccagcc 901
>gb|BC035798.1| Homo sapiens similar to expressed sequence AI593442, mRNA (cDNA clone MGC:46342 IMAGE:5735100), complete cds Length = 2430 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 gtgctcctccgcctccaccggcagcc 280 |||||||||||||||||||| ||||| Sbjct: 808 gtgctcctccgcctccaccgccagcc 833
>ref|NM_207645.1| Homo sapiens similar to expressed sequence AI593442 (LOC399947), mRNA gb|BC068577.1| Homo sapiens similar to expressed sequence AI593442, mRNA (cDNA clone MGC:87557 IMAGE:4818568), complete cds Length = 2355 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 gtgctcctccgcctccaccggcagcc 280 |||||||||||||||||||| ||||| Sbjct: 861 gtgctcctccgcctccaccgccagcc 886
>emb|AL354898.10| Human DNA sequence from clone RP11-618A20 on chromosome 9 Contains a novel gene (DKFZp434P0216), the ASS gene for argininosuccinate synthetase (ASS1,CTLN1) and three CpG islands, complete sequence Length = 173023 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 agcacaagaagaagcagcagca 241 |||||||||||||||||||||| Sbjct: 26705 agcacaagaagaagcagcagca 26684
>dbj|AB055278.1| Macaca fascicularis brain cDNA, clone:QflA-11381, similar to human hypothetical protein LOC399947, mRNA, NM_207645 Length = 2015 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 gtgctcctccgcctccaccggcagcc 280 |||||||||||||||||||| ||||| Sbjct: 825 gtgctcctccgcctccaccgccagcc 850
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 44.1 bits (22), Expect = 0.85 Identities = 22/22 (100%) Strand = Plus / Plus Query: 530 acagcaccaacggcacctacgt 551 |||||||||||||||||||||| Sbjct: 2457618 acagcaccaacggcacctacgt 2457639
>emb|BX932778.2| Gallus gallus finished cDNA, clone ChEST479i21 Length = 818 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Minus Query: 254 ggtgctcctccgcctccaccggcagc 279 |||||||||||||||||||| ||||| Sbjct: 463 ggtgctcctccgcctccaccagcagc 438
>dbj|AP000775.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-708B6, complete sequence Length = 189955 Score = 44.1 bits (22), Expect = 0.85 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 gtgctcctccgcctccaccggcagcc 280 |||||||||||||||||||| ||||| Sbjct: 137235 gtgctcctccgcctccaccgccagcc 137260
>ref|XR_026638.1| PREDICTED: Gallus gallus similar to pim-3 protein (LOC768655), mRNA Length = 2751 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 accggcagcccgtcggccgtc 291 ||||||||||||||||||||| Sbjct: 197 accggcagcccgtcggccgtc 177
>ref|NM_001065777.1| Oryza sativa (japonica cultivar-group) Os07g0235200 (Os07g0235200) mRNA, partial cds Length = 3211 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 cgcgtcgcccggcccggcgcc 375 ||||||||||||||||||||| Sbjct: 2616 cgcgtcgcccggcccggcgcc 2596
>ref|XM_001213550.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_04372) mRNA, complete cds Length = 936 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 cacatcggctaccgcgtcgcc 363 ||||||||||||||||||||| Sbjct: 463 cacatcggctaccgcgtcgcc 483
>emb|CT009518.6| Mouse DNA sequence from clone RP23-118M14 on chromosome 13, complete sequence Length = 221250 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 gggcctctccaactgagcaac 21 ||||||||||||||||||||| Sbjct: 54109 gggcctctccaactgagcaac 54089
>gb|AC158536.2| Mus musculus BAC clone RP23-29L19 from chromosome 13, complete sequence Length = 199663 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 gggcctctccaactgagcaac 21 ||||||||||||||||||||| Sbjct: 118825 gggcctctccaactgagcaac 118805 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 gggcctctccaactgagcaac 21 ||||||||||||||||||||| Sbjct: 181118 gggcctctccaactgagcaac 181098
>gb|AC150313.7| Mus musculus BAC clone RP23-436A18 from chromosome 7, complete sequence Length = 204095 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 ggaggcagtggcagcagcggc 83 ||||||||||||||||||||| Sbjct: 184838 ggaggcagtggcagcagcggc 184858
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 530 acagcaccaacggcacctacg 550 ||||||||||||||||||||| Sbjct: 1450582 acagcaccaacggcacctacg 1450562
>gb|AC016909.9| Homo sapiens BAC clone RP11-458A7 from 2, complete sequence Length = 155535 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 854 tcctcaaggaacaggtcattc 874 ||||||||||||||||||||| Sbjct: 118249 tcctcaaggaacaggtcattc 118229
>gb|AF242432.1|AF242431S2 Mus musculus Naip3 gene, exon 1; neuronal apoptosis inhibitory protein 1 (Naip1) and general transcription factor IIH polypeptide 2 (Gtf2h2) genes, complete cds Length = 90650 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gggcctctccaactgagcaac 21 ||||||||||||||||||||| Sbjct: 35527 gggcctctccaactgagcaac 35547
>gb|AF242431.1|AF242431S1 Mus musculus neuronal apoptosis inhibitory protein 6 (Naip6) gene, complete cds; and Naip3 gene, exons 2-9 and 11-16 Length = 117791 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gggcctctccaactgagcaac 21 ||||||||||||||||||||| Sbjct: 91200 gggcctctccaactgagcaac 91220
>dbj|AK120395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G01, full insert sequence Length = 3213 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 cgcgtcgcccggcccggcgcc 375 ||||||||||||||||||||| Sbjct: 2617 cgcgtcgcccggcccggcgcc 2597
>dbj|AP005246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0061L20 Length = 138926 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 cgcgtcgcccggcccggcgcc 375 ||||||||||||||||||||| Sbjct: 111755 cgcgtcgcccggcccggcgcc 111775
>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0407H12 Length = 167754 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 cgcgtcgcccggcccggcgcc 375 ||||||||||||||||||||| Sbjct: 38851 cgcgtcgcccggcccggcgcc 38871
>emb|AJ130845.1|CCO130845 Coturnix coturnix mRNA for pim-3 protein Length = 1534 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 accggcagcccgtcggccgtc 291 ||||||||||||||||||||| Sbjct: 299 accggcagcccgtcggccgtc 279
>gb|AC151414.2| Mus musculus BAC clone RP23-44E14 from 7, complete sequence Length = 190050 Score = 42.1 bits (21), Expect = 3.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ggaggcagtggcagcagcggc 83 ||||||||||||||||||||| Sbjct: 110977 ggaggcagtggcagcagcggc 110957 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 139,299,305 Number of extensions: 7438135 Number of successful extensions: 151824 Number of sequences better than 10.0: 51 Number of HSP's gapped: 151823 Number of HSP's successfully gapped: 82 Length of query: 893 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 870 Effective length of database: 18,503,978,556 Effective search space: 16098461343720 Effective search space used: 16098461343720 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)