| Clone Name | FLbaf177e08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL049762.20|HSDJ81F6 Human DNA sequence from clone RP1-81F6 on chromosome 1q24.1-25.2 Contains the 5' end of the gene for HBxAg transactivated protein 2 (XTP2), complete sequence Length = 100575 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 303 acaggagaaaataaataaatcgaataaga 331 |||||| |||||||||||||| ||||||| Sbjct: 73147 acaggaaaaaataaataaatccaataaga 73175
>emb|BX088540.6| Zebrafish DNA sequence from clone CH211-225B7 in linkage group 15, complete sequence Length = 176569 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaataaat 322 |||||||||| |||||||||||||| Sbjct: 27533 ttggaacaggggaaaataaataaat 27557
>dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-356J5, complete sequence Length = 165678 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 aacaggagaaaataaataaat 322 ||||||||||||||||||||| Sbjct: 44695 aacaggagaaaataaataaat 44675
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 gccgcgctggagggcttcct 61 |||||||||||||||||||| Sbjct: 248906 gccgcgctggagggcttcct 248925
>gb|BC087449.1| Xenopus laevis KF-1b, mRNA (cDNA clone MGC:99268 IMAGE:7210794), complete cds Length = 2559 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttgtctgtcgtctctctacgattt 381 |||||||| ||||||||||||||| Sbjct: 284 ttgtctgttgtctctctacgattt 307
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence Length = 258658 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 tggaacaggagaaaataaataaat 322 ||||| |||||||||||||||||| Sbjct: 209854 tggaaaaggagaaaataaataaat 209877
>gb|AC123873.4| Mus musculus chromosome UNKNOWN clone RP23-261G21, complete sequence Length = 195405 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 87601 ttggaacaggacaaaataaataaa 87624
>gb|AC126035.4| Mus musculus chromosome UNKNOWN clone RP24-122B7, complete sequence Length = 211301 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 126928 ttggaacaggacaaaataaataaa 126951
>gb|AC140234.4| Mus musculus chromosome UNKNOWN clone RP23-470P12, complete sequence Length = 203294 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 70994 ttggaacaggacaaaataaataaa 70971
>gb|AC125028.8| Mus musculus chromosome 16, clone RP24-85G10, complete sequence Length = 269788 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaa 317 |||||||||||||||||||| Sbjct: 269036 ttggaacaggagaaaataaa 269055
>gb|AC117689.11| Mus musculus chromosome 12, clone RP23-446I19, complete sequence Length = 200562 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 atcacttgatgttcttccct 350 |||||||||||||||||||| Sbjct: 146704 atcacttgatgttcttccct 146685
>gb|AC125326.4| Mus musculus BAC clone RP23-320H13 from chromosome 5, complete sequence Length = 216667 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 76554 ttggaacaggacaaaataaataaa 76577
>gb|AC132950.3| Mus musculus BAC clone RP23-183C6 from chromosome 5, complete sequence Length = 217825 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 145073 ttggaacaggacaaaataaataaa 145096
>gb|AC007130.2| Homo sapiens BAC clone GS1-98E2 from 7, complete sequence Length = 135553 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 gaacaggagaaaataaataa 320 |||||||||||||||||||| Sbjct: 99665 gaacaggagaaaataaataa 99684
>gb|AC126241.4| Mus musculus chromosome UL clone RP24-248P10, complete sequence Length = 187641 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 128924 ttggaacaggacaaaataaataaa 128947
>gb|AC141645.4| Mus musculus BAC clone RP23-109K22 from chromosome ul, complete sequence Length = 209250 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 17021 ttggaacaggacaaaataaataaa 17044
>gb|AC124599.4| Mus musculus chromosome UL clone RP23-24D13, complete sequence Length = 208587 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 142907 ttggaacaggacaaaataaataaa 142884
>dbj|AK141050.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230018G02 product:hypothetical RNA-binding region RNP-1 (RNA recognition motif) containing protein, full insert sequence Length = 4072 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tctgctgccaccgatgtgtg 127 |||||||||||||||||||| Sbjct: 2325 tctgctgccaccgatgtgtg 2344
>gb|AC163758.3| Pan troglodytes BAC clone CH251-221N15 from chromosome 7, complete sequence Length = 157318 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gaacaggagaaaataaataa 320 |||||||||||||||||||| Sbjct: 486 gaacaggagaaaataaataa 467
>emb|CT025542.5| Mouse DNA sequence from clone RP24-270A18 on chromosome 12, complete sequence Length = 181654 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 atcacttgatgttcttccct 350 |||||||||||||||||||| Sbjct: 13211 atcacttgatgttcttccct 13192
>gb|AC148663.1| Macaca mulatta Major Histocompatibility Complex BAC MMU012K22, complete sequence Length = 174897 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 acaggagaaaataaataaat 322 |||||||||||||||||||| Sbjct: 16756 acaggagaaaataaataaat 16737
>gb|AC099040.10| Oryza sativa chromosome 10 BAC OSJNBa0004P12 genomic sequence, complete sequence Length = 137029 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgtcgtcgtgtcgtgcaccg 100 |||||||||||||||||||| Sbjct: 20257 cgtcgtcgtgtcgtgcaccg 20276
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 cgtcgtcgtgtcgtgcaccg 100 |||||||||||||||||||| Sbjct: 6952106 cgtcgtcgtgtcgtgcaccg 6952125
>emb|Z68893.1|HLHOLLIGN H.lanatus mRNA for Hol l I protein Length = 1086 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aagatcacttgatgttcttc 347 |||||||||||||||||||| Sbjct: 771 aagatcacttgatgttcttc 752
>gb|AC008491.6|AC008491 Homo sapiens chromosome 5 clone CTC-426L22, complete sequence Length = 143661 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 acaggagaaaataaataaat 322 |||||||||||||||||||| Sbjct: 79291 acaggagaaaataaataaat 79310
>emb|CR457461.7| Zebrafish DNA sequence from clone DKEY-23O10 in linkage group 14, complete sequence Length = 213600 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 aaaataaataaatcgaataa 329 |||||||||||||||||||| Sbjct: 11793 aaaataaataaatcgaataa 11774
>gb|AF323928.1|AF323928 Plasmodium falciparum GcpE (gcpE) gene, complete cds Length = 3148 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 tggaacaggagaaaataaataaat 322 ||||| |||||||||||||||||| Sbjct: 3051 tggaaaaggagaaaataaataaat 3074
>gb|AC124589.5| Mus musculus BAC clone RP23-133M13 from chromosome unknown, complete sequence Length = 209265 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 203913 ttggaacaggacaaaataaataaa 203936
>gb|AC140365.4| Mus musculus BAC clone RP24-221M24 from chromosome 5, complete sequence Length = 191473 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 3988 ttggaacaggacaaaataaataaa 3965
>gb|AC010315.6|AC010315 Homo sapiens chromosome 5 clone CTB-84H20, complete sequence Length = 65705 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 acaggagaaaataaataaat 322 |||||||||||||||||||| Sbjct: 21276 acaggagaaaataaataaat 21295
>gb|AC074182.6| Homo sapiens BAC clone RP11-553G13 from 2, complete sequence Length = 190436 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 cttctctattcttctgatat 450 |||||||||||||||||||| Sbjct: 29708 cttctctattcttctgatat 29689
>gb|AC015969.9| Homo sapiens BAC clone RP11-218N6 from 2, complete sequence Length = 123576 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 tgttggaacaggagaaaataaata 319 |||||||||||||||||| ||||| Sbjct: 40876 tgttggaacaggagaaaaaaaata 40853
>emb|BX548047.12| Zebrafish DNA sequence from clone CH211-77G15 in linkage group 2, complete sequence Length = 179092 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gaacaggagaaaataaataa 320 |||||||||||||||||||| Sbjct: 121913 gaacaggagaaaataaataa 121894
>gb|BC079645.1| Mus musculus RIKEN cDNA E030041M21 gene, mRNA (cDNA clone IMAGE:6850732), with apparent retained intron Length = 4632 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tctgctgccaccgatgtgtg 127 |||||||||||||||||||| Sbjct: 985 tctgctgccaccgatgtgtg 1004
>gb|AC154752.2| Mus musculus BAC clone RP24-402K18 from 16, complete sequence Length = 174112 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ttggaacaggagaaaataaa 317 |||||||||||||||||||| Sbjct: 29156 ttggaacaggagaaaataaa 29175
>ref|NM_029166.1| Mus musculus RIKEN cDNA E030041M21 gene (E030041M21Rik), mRNA dbj|AB093261.1| Mus musculus mRNA for mKIAA0701 protein Length = 4942 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tctgctgccaccgatgtgtg 127 |||||||||||||||||||| Sbjct: 2281 tctgctgccaccgatgtgtg 2300
>gb|AC130216.4| Mus musculus BAC clone RP23-218G9 from 10, complete sequence Length = 182204 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tctgctgccaccgatgtgtg 127 |||||||||||||||||||| Sbjct: 174620 tctgctgccaccgatgtgtg 174639
>gb|AC154565.2| Mus musculus BAC clone RP23-403J19 from chromosome 16, complete sequence Length = 202981 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 aaaataaataaatcgaataa 329 |||||||||||||||||||| Sbjct: 129643 aaaataaataaatcgaataa 129662
>gb|AC113058.6| Mus musculus chromosome 6, clone RP23-253C24, complete sequence Length = 248761 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 tattcttctctattcttctgatat 450 ||||||||| |||||||||||||| Sbjct: 18934 tattcttctttattcttctgatat 18911
>gb|AC134539.3| Mus musculus BAC clone RP24-400I3 from 10, complete sequence Length = 166054 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tctgctgccaccgatgtgtg 127 |||||||||||||||||||| Sbjct: 107040 tctgctgccaccgatgtgtg 107021
>emb|AL627385.13| Mouse DNA sequence from clone RP23-229I19 on chromosome X, complete sequence Length = 209817 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 acaggagaaaataaataaat 322 |||||||||||||||||||| Sbjct: 155938 acaggagaaaataaataaat 155957
>ref|XM_730853.1| Plasmodium chabaudi chabaudi hypothetical protein (PC405563.00.0) partial mRNA Length = 299 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 tggaacaggagaaaataaataaat 322 |||||||| ||||||||||||||| Sbjct: 236 tggaacagaagaaaataaataaat 213
>gb|AC124606.3| Mus musculus BAC clone RP23-82D2 from chromosome unknown, complete sequence Length = 225720 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ttggaacaggagaaaataaataaa 321 ||||||||||| |||||||||||| Sbjct: 159762 ttggaacaggacaaaataaataaa 159739
>dbj|AB083247.1| Xenopus laevis x-kf-1b mRNA for KF-1b, complete cds Length = 2834 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ttgtctgtcgtctctctacgattt 381 |||||||| ||||||||||||||| Sbjct: 290 ttgtctgttgtctctctacgattt 313 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 85,308,174 Number of extensions: 6673849 Number of successful extensions: 608395 Number of sequences better than 10.0: 45 Number of HSP's gapped: 608395 Number of HSP's successfully gapped: 45 Length of query: 490 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 468 Effective length of database: 18,508,616,841 Effective search space: 8662032681588 Effective search space used: 8662032681588 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)