ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf173p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8K3V7:K1024_MOUSE UPF0258 protein KIAA1024 - Mus musculus (Mouse) 34 3.8
2Q2Q0I9:FNDC1_RAT Fibronectin type III domain-containing protein ... 33 6.5

>Q8K3V7:K1024_MOUSE UPF0258 protein KIAA1024 - Mus musculus (Mouse)|
          Length = 917
 Score = 33.9 bits (76), Expect = 3.8
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 2530 LRVHSKYSLVTPEPESRG*HPCEIGII*SVVPVEMEPMSTRDS-TVASVIRI*IFLSSPP 2706
            L+  S YS+ +P+P       CE+      + +E EPMS +DS  ++  I+     S  P
Sbjct: 195  LQALSPYSVASPQP-------CEMQRTYFPMNIENEPMSDQDSLPISQGIKETFISSEEP 247

Query: 2707 MILHGCVPKICIFLE 2751
             ++  CV K  IF E
Sbjct: 248  FVVQSCVQKRNIFKE 262



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>Q2Q0I9:FNDC1_RAT Fibronectin type III domain-containing protein 1 - Rattus norvegicus|
            (Rat)
          Length = 1730

 Score = 33.1 bits (74), Expect = 6.5
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
 Frame = +3

Query: 315  PLSTPAC*VSRMMPPSADNHRQTRLCPCPGARVRRRMNPTGGSHLSVRQ-PSAPLAQPR* 491
            P ++PA   S    PS      +R  P PG+ V RRM P   S LS  Q     L+QP+ 
Sbjct: 830  PQTSPA---STSRQPSPARPPASRSQPSPGSTVPRRMTPDRSSELSSSQSKDRSLSQPKL 886

Query: 492  CVSLSGKFTPCVSALSFSGKCILPETFPSNMLSAIETV---NSTE 617
             V+ +G   P  +    + + +LP   P N     ++    NSTE
Sbjct: 887  SVAHAGHDHPHTA----NSRGVLPSA-PQNQNEGAQSTYEDNSTE 926


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 554,272,921
Number of extensions: 13388648
Number of successful extensions: 27970
Number of sequences better than 10.0: 2
Number of HSP's gapped: 27923
Number of HSP's successfully gapped: 2
Length of query: 931
Length of database: 100,686,439
Length adjustment: 123
Effective length of query: 808
Effective length of database: 66,948,154
Effective search space: 54094108432
Effective search space used: 54094108432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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