| Clone Name | FLbaf173l22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056390.1| Oryza sativa (japonica cultivar-group) Os03g0300200 (Os03g0300200) mRNA, complete cds Length = 1667 Score = 640 bits (323), Expect = e-180 Identities = 593/683 (86%) Strand = Plus / Plus Query: 192 tctgtcattggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcac 251 |||| |||||||| |||||||||||||| |||||| | ||| |||||||||||||| ||| Sbjct: 614 tctgccattggtgcggtacatggaaaggtgataaactctgtagtagctgcaagaaagcac 673 Query: 252 gttactgttctgagaaacatcaggcactgcactggcgctctggtcataaaattgattgcc 311 | ||||| |||||||| |||||| ||||||||||||||||||| ||||| | |||||||| Sbjct: 674 gctactgctctgagaagcatcagacactgcactggcgctctggccataagagtgattgcc 733 Query: 312 tacagataatcaattcttctgaagcttcaagttctgtgctgccagctgtaggaaaagttc 371 ||||| |||||| |||||||||||||||||| ||| | | || |||||||||||||||| Sbjct: 734 tacagttaatcagttcttctgaagcttcaagctctatttttcctgctgtaggaaaagttc 793 Query: 372 ctgctaggagttcttggccggaatatcagatagcaattgacgatgaagttgatttggatt 431 ||||||| | |||||||| |||||| |||| ||||| ||| |||| | || ||| ||| Sbjct: 794 ctgctagcaaatcttggccagaatatgagattgcaatcgactatgagggtgctttcaatt 853 Query: 432 ctgatagttgtgatgaaaacagctcaaagtccttggtgatccaaaagcatggtaaaccag 491 |||| ||||||||||| | | |||||||||||||||||| |||| | ||||||||||| Sbjct: 854 ctgacagttgtgatgagagtaactcaaagtccttggtgatgcaaagacctggtaaaccag 913 Query: 492 atgatacaatgcagtcatggatggatcaatttgaggctgatgctgacaaccgatgctggg 551 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 914 atgatatgatgcagtcatggatggatcaatttgaggctgatgctgacaacaaatgctggg 973 Query: 552 catattttcaagagcgtatcacaagagggccaaagcaagtattgagatactgtcgagatc 611 | | |||||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 974 cgtcttttcaagagcgggtctcaagagcaccaaagcaagtattgagatactgtcgagaag 1033 Query: 612 caaatgcaaaacctctgtgggctttatcagctgggcgtccatcaaatgctgatatcccta 671 ||||| |||||||| ||||| ||||| ||||| ||||||||||||| |||||||| Sbjct: 1034 agaatgccaaacctctatgggcgttatcggctggttgtccatcaaatgccgatatcccat 1093 Query: 672 aatgtagctactgtaaaggtccgctgtgctatgaatttcagataatgccacaattgcttt 731 |||||||||||||| |||||| || |||||||||||||||||||||||||| |||||| Sbjct: 1094 catgtagctactgtagaggtccactatgctatgaatttcagataatgccacagctgcttt 1153 Query: 732 attactttggtgtgagaaacgaaccagactctcttgattgggcaacagttgttgtgtaca 791 ||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||| Sbjct: 1154 attactttggtgtgaaaaatgagccagactctcttgattgggcaacaattgttgtgtaca 1213 Query: 792 catgtcaaggatcatgtgatgaaagtattagctacatggaagaatttgcatgggttcagt 851 ||||| |||||||||| ||| ||| | | ||||||| ||| ||||||||||||||||||| Sbjct: 1214 catgtaaaggatcatgcgatcaaaatgtcagctacaaggaggaatttgcatgggttcagt 1273 Query: 852 tatatcctacgtcaatcacaagg 874 |||| ||||| ||| ||||||| Sbjct: 1274 tataccctacaacaaccacaagg 1296
>dbj|AK102070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082G07, full insert sequence Length = 1668 Score = 640 bits (323), Expect = e-180 Identities = 593/683 (86%) Strand = Plus / Plus Query: 192 tctgtcattggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcac 251 |||| |||||||| |||||||||||||| |||||| | ||| |||||||||||||| ||| Sbjct: 615 tctgccattggtgcggtacatggaaaggtgataaactctgtagtagctgcaagaaagcac 674 Query: 252 gttactgttctgagaaacatcaggcactgcactggcgctctggtcataaaattgattgcc 311 | ||||| |||||||| |||||| ||||||||||||||||||| ||||| | |||||||| Sbjct: 675 gctactgctctgagaagcatcagacactgcactggcgctctggccataagagtgattgcc 734 Query: 312 tacagataatcaattcttctgaagcttcaagttctgtgctgccagctgtaggaaaagttc 371 ||||| |||||| |||||||||||||||||| ||| | | || |||||||||||||||| Sbjct: 735 tacagttaatcagttcttctgaagcttcaagctctatttttcctgctgtaggaaaagttc 794 Query: 372 ctgctaggagttcttggccggaatatcagatagcaattgacgatgaagttgatttggatt 431 ||||||| | |||||||| |||||| |||| ||||| ||| |||| | || ||| ||| Sbjct: 795 ctgctagcaaatcttggccagaatatgagattgcaatcgactatgagggtgctttcaatt 854 Query: 432 ctgatagttgtgatgaaaacagctcaaagtccttggtgatccaaaagcatggtaaaccag 491 |||| ||||||||||| | | |||||||||||||||||| |||| | ||||||||||| Sbjct: 855 ctgacagttgtgatgagagtaactcaaagtccttggtgatgcaaagacctggtaaaccag 914 Query: 492 atgatacaatgcagtcatggatggatcaatttgaggctgatgctgacaaccgatgctggg 551 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 915 atgatatgatgcagtcatggatggatcaatttgaggctgatgctgacaacaaatgctggg 974 Query: 552 catattttcaagagcgtatcacaagagggccaaagcaagtattgagatactgtcgagatc 611 | | |||||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 975 cgtcttttcaagagcgggtctcaagagcaccaaagcaagtattgagatactgtcgagaag 1034 Query: 612 caaatgcaaaacctctgtgggctttatcagctgggcgtccatcaaatgctgatatcccta 671 ||||| |||||||| ||||| ||||| ||||| ||||||||||||| |||||||| Sbjct: 1035 agaatgccaaacctctatgggcgttatcggctggttgtccatcaaatgccgatatcccat 1094 Query: 672 aatgtagctactgtaaaggtccgctgtgctatgaatttcagataatgccacaattgcttt 731 |||||||||||||| |||||| || |||||||||||||||||||||||||| |||||| Sbjct: 1095 catgtagctactgtagaggtccactatgctatgaatttcagataatgccacagctgcttt 1154 Query: 732 attactttggtgtgagaaacgaaccagactctcttgattgggcaacagttgttgtgtaca 791 ||||||||||||||| ||| || |||||||||||||||||||||||| |||||||||||| Sbjct: 1155 attactttggtgtgaaaaatgagccagactctcttgattgggcaacaattgttgtgtaca 1214 Query: 792 catgtcaaggatcatgtgatgaaagtattagctacatggaagaatttgcatgggttcagt 851 ||||| |||||||||| ||| ||| | | ||||||| ||| ||||||||||||||||||| Sbjct: 1215 catgtaaaggatcatgcgatcaaaatgtcagctacaaggaggaatttgcatgggttcagt 1274 Query: 852 tatatcctacgtcaatcacaagg 874 |||| ||||| ||| ||||||| Sbjct: 1275 tataccctacaacaaccacaagg 1297
>gb|AY103904.1| Zea mays PCO132990 mRNA sequence Length = 810 Score = 385 bits (194), Expect = e-103 Identities = 498/596 (83%), Gaps = 5/596 (0%) Strand = Plus / Plus Query: 200 tggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactgt 259 ||||||||||| |||||||| |||||||||||| |||||||||||||| || | |||||| Sbjct: 219 tggtgtggtacctggaaaggtgataaaatatgtagtagctgcaagaaagcaaggtactgt 278 Query: 260 tctgagaaacatcaggcactgcactggcgctctggtcataaaattgattgcctacagata 319 | |||||||||||| ||| |||| ||||| |||||||||||| ||||||||| |||||| Sbjct: 279 tatgagaaacatcatgcattgcattggcgtactggtcataaaaatgattgcctccagata 338 Query: 320 atcaattcttctgaagcttcaagttctgtgctgccagctgtaggaaaagttcctgctagg 379 || | |||| ||| |||||| ||| || |||||||||||||||| |||||||||||| Sbjct: 339 ataagttctgctg---cttcaaattcagttctgccagctgtaggaatagttcctgctagc 395 Query: 380 agttcttggccggaatatcagatagcaattgacgatgaagttgatttggattctgatagt 439 | ||||||||| |||| | ||||| ||| ||| | |||| | ||| |||||||||||| Sbjct: 396 atttcttggccagaatttgagataaaaatagactacgaaggtacttttgattctgatagt 455 Query: 440 tgtgatgaaaacagctcaaagtccttggtgatccaaaagcatggtaaaccagatgataca 499 |||||||||| | ||||||||| |||||||| |||| ||||| ||||| |||| || Sbjct: 456 ggtgatgaaaataactcaaagtcattggtgatgcaaagacatgggaaacctgatgctatg 515 Query: 500 atgcagtcatggatggatcaatttgaggctgatgctgacaaccgatgctgggcatatttt 559 |||||||| |||||||| || || ||||||||||||||||| ||||||||| | |||| Sbjct: 516 atgcagtcgtggatggaccatttccaggctgatgctgacaacaaatgctgggcgtctttt 575 Query: 560 caagagcgtatcacaagagggccaaagcaagtattgagatactgtcgagatccaaatgca 619 |||||||| || |||||| ||||| ||||| ||||| || |||||||| |||||||| Sbjct: 576 caagagcgggtctcaagagcaccaaatcaagtgttgaggtattgtcgagaaccaaatgct 635 Query: 620 aaacctctgtgggctttatcagctgggcgtccatcaaatgctgatatccctaaatgtagc 679 |||||||| ||||| ||||| || | || ||| ||||||||||||| ||||||| Sbjct: 636 aaacctctctgggccttatctttcggatgcccgtcagatgctgatatcccatcatgtagc 695 Query: 680 tactgtaaaggtccgctgtgctatgaatttcagataatgccacaattgctttattact-t 738 ||||||| |||||| | ||||||||||||||| ||||||||||||||||||||| || | Sbjct: 696 tactgtagaggtccattatgctatgaatttcaggtaatgccacaattgctttatttctct 755 Query: 739 tggtgtgagaaacgaaccagactctcttgattgggcaacagttgttgtgtacacat 794 |||||| ||| | |||||||||| ||||||||||||||| ||||||| ||||||| Sbjct: 756 tggtgttggaatc-aaccagactcgcttgattgggcaacaattgttgtctacacat 810
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence Length = 153308 Score = 184 bits (93), Expect = 5e-43 Identities = 147/165 (89%) Strand = Plus / Minus Query: 710 cagataatgccacaattgctttattactttggtgtgagaaacgaaccagactctcttgat 769 |||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||||| Sbjct: 80935 cagataatgccacagctgctttattactttggtgtgaaaaatgagccagactctcttgat 80876 Query: 770 tgggcaacagttgttgtgtacacatgtcaaggatcatgtgatgaaagtattagctacatg 829 ||||||||| ||||||||||||||||| |||||||||| ||| ||| | | ||||||| | Sbjct: 80875 tgggcaacaattgttgtgtacacatgtaaaggatcatgcgatcaaaatgtcagctacaag 80816 Query: 830 gaagaatttgcatgggttcagttatatcctacgtcaatcacaagg 874 || ||||||||||||||||||||||| ||||| ||| ||||||| Sbjct: 80815 gaggaatttgcatgggttcagttataccctacaacaaccacaagg 80771 Score = 129 bits (65), Expect = 3e-26 Identities = 137/161 (85%) Strand = Plus / Minus Query: 367 agttcctgctaggagttcttggccggaatatcagatagcaattgacgatgaagttgattt 426 |||||||||||| | |||||||| |||||| |||| ||||| ||| |||| | || ||| Sbjct: 82134 agttcctgctagcaaatcttggccagaatatgagattgcaatcgactatgagggtgcttt 82075 Query: 427 ggattctgatagttgtgatgaaaacagctcaaagtccttggtgatccaaaagcatggtaa 486 ||||||| ||||||||||| | | |||||||||||||||||| |||| | |||||| Sbjct: 82074 caattctgacagttgtgatgagagtaactcaaagtccttggtgatgcaaagacctggtaa 82015 Query: 487 accagatgatacaatgcagtcatggatggatcaatttgagg 527 ||||||||||| |||||||||||||||||||||||||||| Sbjct: 82014 accagatgatatgatgcagtcatggatggatcaatttgagg 81974 Score = 99.6 bits (50), Expect = 2e-17 Identities = 86/98 (87%) Strand = Plus / Minus Query: 271 tcaggcactgcactggcgctctggtcataaaattgattgcctacagataatcaattcttc 330 |||| ||||||||||||||||||| ||||| | ||||||||||||| |||||| |||||| Sbjct: 82306 tcagacactgcactggcgctctggccataagagtgattgcctacagttaatcagttcttc 82247 Query: 331 tgaagcttcaagttctgtgctgccagctgtaggaaaag 368 |||||||||||| ||| | | || ||||||||||||| Sbjct: 82246 tgaagcttcaagctctatttttcctgctgtaggaaaag 82209 Score = 97.6 bits (49), Expect = 1e-16 Identities = 100/117 (85%) Strand = Plus / Minus Query: 596 agatactgtcgagatccaaatgcaaaacctctgtgggctttatcagctgggcgtccatca 655 |||||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct: 81630 agatactgtcgagaagagaatgccaaacctctatgggcgttatcggctggttgtccatca 81571 Query: 656 aatgctgatatccctaaatgtagctactgtaaaggtccgctgtgctatgaatttcag 712 ||||| |||||||| |||||||||||||| |||||| || ||||||||||||||| Sbjct: 81570 aatgccgatatcccatcatgtagctactgtagaggtccactatgctatgaatttcag 81514 Score = 89.7 bits (45), Expect = 2e-14 Identities = 81/93 (87%) Strand = Plus / Minus Query: 183 cagctgctctctgtcattggtgtggtacatggaaaggggataaaatatgtggtagctgca 242 ||||| || |||| |||||||| |||||||||||||| |||||| | ||| ||||||||| Sbjct: 82481 cagctcctgtctgccattggtgcggtacatggaaaggtgataaactctgtagtagctgca 82422 Query: 243 agaaatcacgttactgttctgagaaacatcagg 275 ||||| |||| ||||| |||||||| ||||||| Sbjct: 82421 agaaagcacgctactgctctgagaagcatcagg 82389 Score = 73.8 bits (37), Expect = 1e-09 Identities = 64/73 (87%) Strand = Plus / Minus Query: 525 aggctgatgctgacaaccgatgctgggcatattttcaagagcgtatcacaagagggccaa 584 ||||||||||||||||| ||||||||| | |||||||||||| || |||||| |||| Sbjct: 81886 aggctgatgctgacaacaaatgctgggcgtcttttcaagagcgggtctcaagagcaccaa 81827 Query: 585 agcaagtattgag 597 ||||||||||||| Sbjct: 81826 agcaagtattgag 81814
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 184 bits (93), Expect = 5e-43 Identities = 147/165 (89%) Strand = Plus / Minus Query: 710 cagataatgccacaattgctttattactttggtgtgagaaacgaaccagactctcttgat 769 |||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||||| Sbjct: 10523223 cagataatgccacagctgctttattactttggtgtgaaaaatgagccagactctcttgat 10523164 Query: 770 tgggcaacagttgttgtgtacacatgtcaaggatcatgtgatgaaagtattagctacatg 829 ||||||||| ||||||||||||||||| |||||||||| ||| ||| | | ||||||| | Sbjct: 10523163 tgggcaacaattgttgtgtacacatgtaaaggatcatgcgatcaaaatgtcagctacaag 10523104 Query: 830 gaagaatttgcatgggttcagttatatcctacgtcaatcacaagg 874 || ||||||||||||||||||||||| ||||| ||| ||||||| Sbjct: 10523103 gaggaatttgcatgggttcagttataccctacaacaaccacaagg 10523059 Score = 129 bits (65), Expect = 3e-26 Identities = 137/161 (85%) Strand = Plus / Minus Query: 367 agttcctgctaggagttcttggccggaatatcagatagcaattgacgatgaagttgattt 426 |||||||||||| | |||||||| |||||| |||| ||||| ||| |||| | || ||| Sbjct: 10524422 agttcctgctagcaaatcttggccagaatatgagattgcaatcgactatgagggtgcttt 10524363 Query: 427 ggattctgatagttgtgatgaaaacagctcaaagtccttggtgatccaaaagcatggtaa 486 ||||||| ||||||||||| | | |||||||||||||||||| |||| | |||||| Sbjct: 10524362 caattctgacagttgtgatgagagtaactcaaagtccttggtgatgcaaagacctggtaa 10524303 Query: 487 accagatgatacaatgcagtcatggatggatcaatttgagg 527 ||||||||||| |||||||||||||||||||||||||||| Sbjct: 10524302 accagatgatatgatgcagtcatggatggatcaatttgagg 10524262 Score = 99.6 bits (50), Expect = 2e-17 Identities = 86/98 (87%) Strand = Plus / Minus Query: 271 tcaggcactgcactggcgctctggtcataaaattgattgcctacagataatcaattcttc 330 |||| ||||||||||||||||||| ||||| | ||||||||||||| |||||| |||||| Sbjct: 10524594 tcagacactgcactggcgctctggccataagagtgattgcctacagttaatcagttcttc 10524535 Query: 331 tgaagcttcaagttctgtgctgccagctgtaggaaaag 368 |||||||||||| ||| | | || ||||||||||||| Sbjct: 10524534 tgaagcttcaagctctatttttcctgctgtaggaaaag 10524497 Score = 97.6 bits (49), Expect = 1e-16 Identities = 100/117 (85%) Strand = Plus / Minus Query: 596 agatactgtcgagatccaaatgcaaaacctctgtgggctttatcagctgggcgtccatca 655 |||||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct: 10523918 agatactgtcgagaagagaatgccaaacctctatgggcgttatcggctggttgtccatca 10523859 Query: 656 aatgctgatatccctaaatgtagctactgtaaaggtccgctgtgctatgaatttcag 712 ||||| |||||||| |||||||||||||| |||||| || ||||||||||||||| Sbjct: 10523858 aatgccgatatcccatcatgtagctactgtagaggtccactatgctatgaatttcag 10523802 Score = 89.7 bits (45), Expect = 2e-14 Identities = 81/93 (87%) Strand = Plus / Minus Query: 183 cagctgctctctgtcattggtgtggtacatggaaaggggataaaatatgtggtagctgca 242 ||||| || |||| |||||||| |||||||||||||| |||||| | ||| ||||||||| Sbjct: 10524769 cagctcctgtctgccattggtgcggtacatggaaaggtgataaactctgtagtagctgca 10524710 Query: 243 agaaatcacgttactgttctgagaaacatcagg 275 ||||| |||| ||||| |||||||| ||||||| Sbjct: 10524709 agaaagcacgctactgctctgagaagcatcagg 10524677 Score = 73.8 bits (37), Expect = 1e-09 Identities = 64/73 (87%) Strand = Plus / Minus Query: 525 aggctgatgctgacaaccgatgctgggcatattttcaagagcgtatcacaagagggccaa 584 ||||||||||||||||| ||||||||| | |||||||||||| || |||||| |||| Sbjct: 10524174 aggctgatgctgacaacaaatgctgggcgtcttttcaagagcgggtctcaagagcaccaa 10524115 Query: 585 agcaagtattgag 597 ||||||||||||| Sbjct: 10524114 agcaagtattgag 10524102
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 97.6 bits (49), Expect = 1e-16 Identities = 121/145 (83%) Strand = Plus / Minus Query: 710 cagataatgccacaattgctttattactttggtgtgagaaacgaaccagactctcttgat 769 ||||||||||||||| |||| ||||||| ||| ||| ||||||||||| |||||| Sbjct: 22361814 cagataatgccacaactgctccattacttccatgttgaaaatgaaccagactcacttgat 22361755 Query: 770 tgggcaacagttgttgtgtacacatgtcaaggatcatgtgatgaaagtattagctacatg 829 ||||||||| | |||| ||||||||| |||| || |||||| ||| | | ||||||||| Sbjct: 22361754 tgggcaacaataattgtttacacatgtaaagggtcctgtgatcaaaatgtcagctacatg 22361695 Query: 830 gaagaatttgcatgggttcagttat 854 |||||||||| ||||||||||||| Sbjct: 22361694 gaagaatttgtttgggttcagttat 22361670 Score = 42.1 bits (21), Expect = 5.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 680 tactgtaaaggtccgctgtgctatgaatttcag 712 |||||||| ||||| || ||||||||||||||| Sbjct: 22362760 tactgtaatggtccactttgctatgaatttcag 22362728 Score = 42.1 bits (21), Expect = 5.0 Identities = 63/77 (81%) Strand = Plus / Minus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| |||||||||||||| ||| | ||| || | || | |||||| ||||||| Sbjct: 22364124 ttggtgtggcacatggaaaggggaaaaagtttgtagtcgttgtaggaaatccagttactg 22364065 Query: 259 ttctgagaaacatcagg 275 ||| |||| ||||||| Sbjct: 22364064 ttcaaagaagcatcagg 22364048
>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013G02 Length = 163419 Score = 97.6 bits (49), Expect = 1e-16 Identities = 121/145 (83%) Strand = Plus / Minus Query: 710 cagataatgccacaattgctttattactttggtgtgagaaacgaaccagactctcttgat 769 ||||||||||||||| |||| ||||||| ||| ||| ||||||||||| |||||| Sbjct: 59084 cagataatgccacaactgctccattacttccatgttgaaaatgaaccagactcacttgat 59025 Query: 770 tgggcaacagttgttgtgtacacatgtcaaggatcatgtgatgaaagtattagctacatg 829 ||||||||| | |||| ||||||||| |||| || |||||| ||| | | ||||||||| Sbjct: 59024 tgggcaacaataattgtttacacatgtaaagggtcctgtgatcaaaatgtcagctacatg 58965 Query: 830 gaagaatttgcatgggttcagttat 854 |||||||||| ||||||||||||| Sbjct: 58964 gaagaatttgtttgggttcagttat 58940 Score = 42.1 bits (21), Expect = 5.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 680 tactgtaaaggtccgctgtgctatgaatttcag 712 |||||||| ||||| || ||||||||||||||| Sbjct: 60030 tactgtaatggtccactttgctatgaatttcag 59998 Score = 42.1 bits (21), Expect = 5.0 Identities = 63/77 (81%) Strand = Plus / Minus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| |||||||||||||| ||| | ||| || | || | |||||| ||||||| Sbjct: 61394 ttggtgtggcacatggaaaggggaaaaagtttgtagtcgttgtaggaaatccagttactg 61335 Query: 259 ttctgagaaacatcagg 275 ||| |||| ||||||| Sbjct: 61334 ttcaaagaagcatcagg 61318
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 60.0 bits (30), Expect = 2e-05 Identities = 30/30 (100%) Strand = Plus / Minus Query: 20 cttaatttttaagccgcccaaaagaactgg 49 |||||||||||||||||||||||||||||| Sbjct: 128439 cttaatttttaagccgcccaaaagaactgg 128410
>ref|NM_001049930.1| Oryza sativa (japonica cultivar-group) Os01g0578200 (Os01g0578200) mRNA, complete cds Length = 852 Score = 58.0 bits (29), Expect = 8e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 506 tcatggatggatcaatttgaggctgatgctgacaaccgatgctgggcatattttcaagag 565 |||| ||||||||| ||||||| ||||| |||||| |||||||||||| ||||| ||| Sbjct: 742 tcattgatggatcagtttgaggttgatgatgacaatagatgctgggcatcttttctagaa 801 Query: 566 cgtatcacaagag 578 || ||| |||||| Sbjct: 802 cgcatctcaagag 814 Score = 44.1 bits (22), Expect = 1.3 Identities = 73/90 (81%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| |||||||||||||| ||| | ||| || | || | |||||| ||||||| Sbjct: 441 ttggtgtggcacatggaaaggggaaaaagtttgtagtcgttgtaggaaatccagttactg 500 Query: 259 ttctgagaaacatcaggcactgcactggcg 288 ||| |||| ||||||| | |||| ||||| Sbjct: 501 ttcaaagaagcatcaggaattgcattggcg 530
>ref|NM_116455.3| Arabidopsis thaliana unknown protein (AT4G02220) mRNA, complete cds Length = 1665 Score = 56.0 bits (28), Expect = 3e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| ||||||||||| |||||| ||||| | ||||||| || | || ||||| Sbjct: 714 ttggtgtggaacatggaaaggagataaactatgtagcggctgcaaaaatgctcgatactg 773 Query: 259 ttctgagaaacatcaggcactgcactggcgctctggtcataaaa 302 ||| |||||| ||||| ||||| ||||||| |||||||||| Sbjct: 774 ttcaccgaaacaccaggccctgcattggcgcttgggtcataaaa 817
>gb|AY056352.1| Arabidopsis thaliana putative zinc finger protein (At4g02220) mRNA, complete cds Length = 1288 Score = 56.0 bits (28), Expect = 3e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| ||||||||||| |||||| ||||| | ||||||| || | || ||||| Sbjct: 567 ttggtgtggaacatggaaaggagataaactatgtagcggctgcaaaaatgctcgatactg 626 Query: 259 ttctgagaaacatcaggcactgcactggcgctctggtcataaaa 302 ||| |||||| ||||| ||||| ||||||| |||||||||| Sbjct: 627 ttcaccgaaacaccaggccctgcattggcgcttgggtcataaaa 670
>gb|AY035129.1| Arabidopsis thaliana putative zinc finger protein (At4g02220) mRNA, complete cds Length = 1606 Score = 56.0 bits (28), Expect = 3e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| ||||||||||| |||||| ||||| | ||||||| || | || ||||| Sbjct: 689 ttggtgtggaacatggaaaggagataaactatgtagcggctgcaaaaatgctcgatactg 748 Query: 259 ttctgagaaacatcaggcactgcactggcgctctggtcataaaa 302 ||| |||||| ||||| ||||| ||||||| |||||||||| Sbjct: 749 ttcaccgaaacaccaggccctgcattggcgcttgggtcataaaa 792
>emb|BX827066.1|CNS0A3B7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB91ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1507 Score = 56.0 bits (28), Expect = 3e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| ||||||||||| |||||| ||||| | ||||||| || | || ||||| Sbjct: 672 ttggtgtggaacatggaaaggagataaactatgtagcggctgcaaaaatgctcgatactg 731 Query: 259 ttctgagaaacatcaggcactgcactggcgctctggtcataaaa 302 ||| |||||| ||||| ||||| ||||||| |||||||||| Sbjct: 732 ttcaccgaaacaccaggccctgcattggcgcttgggtcataaaa 775
>emb|BX828138.1|CNS0A2C5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH56ZE11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1581 Score = 56.0 bits (28), Expect = 3e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| ||||||||||| |||||| ||||| | ||||||| || | || ||||| Sbjct: 684 ttggtgtggaacatggaaaggagataaactatgtagcggctgcaaaaatgctcgatactg 743 Query: 259 ttctgagaaacatcaggcactgcactggcgctctggtcataaaa 302 ||| |||||| ||||| ||||| ||||||| |||||||||| Sbjct: 744 ttcaccgaaacaccaggccctgcattggcgcttgggtcataaaa 787
>emb|BX826848.1|CNS0A2BN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB69ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1608 Score = 56.0 bits (28), Expect = 3e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgtggtagctgcaagaaatcacgttactg 258 ||||||||| ||||||||||| |||||| ||||| | ||||||| || | || ||||| Sbjct: 714 ttggtgtggaacatggaaaggagataaactatgtagcggctgcaaaaatgctcgatactg 773 Query: 259 ttctgagaaacatcaggcactgcactggcgctctggtcataaaa 302 ||| |||||| ||||| ||||| ||||||| |||||||||| Sbjct: 774 ttcaccgaaacaccaggccctgcattggcgcttgggtcataaaa 817
>emb|CT030723.18| Mouse DNA sequence from clone RP23-33L24 on chromosome 16, complete sequence Length = 241451 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 489 cagatgatacaatgcagtcatg 510 |||||||||||||||||||||| Sbjct: 218736 cagatgatacaatgcagtcatg 218757
>gb|AC146569.5| Medicago truncatula clone mth2-102a8, complete sequence Length = 127803 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 978 attaattcaaaagaataaaaaa 999 |||||||||||||||||||||| Sbjct: 68167 attaattcaaaagaataaaaaa 68188
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland Research Institute) complete sequence Length = 147560 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 983 ttcaaaagaataaaaaatgaagacag 1008 ||||||||||||||||||| |||||| Sbjct: 110467 ttcaaaagaataaaaaatgtagacag 110492
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6 Length = 194892 Score = 44.1 bits (22), Expect = 1.3 Identities = 31/34 (91%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgt 232 ||||||||| ||||||||||| |||||| ||||| Sbjct: 13310 ttggtgtggaacatggaaaggagataaactatgt 13343
>gb|AC023512.28|AC023512 Homo sapiens 12 BAC RP11-1018J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186044 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 650 ccatcaaatgctgatatcccta 671 |||||||||||||||||||||| Sbjct: 96763 ccatcaaatgctgatatcccta 96742
>gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3 Length = 48689 Score = 44.1 bits (22), Expect = 1.3 Identities = 31/34 (91%) Strand = Plus / Minus Query: 199 ttggtgtggtacatggaaaggggataaaatatgt 232 ||||||||| ||||||||||| |||||| ||||| Sbjct: 38968 ttggtgtggaacatggaaaggagataaactatgt 38935
>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to 11.6 cM, complete sequence Length = 105654 Score = 44.1 bits (22), Expect = 1.3 Identities = 31/34 (91%) Strand = Plus / Plus Query: 199 ttggtgtggtacatggaaaggggataaaatatgt 232 ||||||||| ||||||||||| |||||| ||||| Sbjct: 103925 ttggtgtggaacatggaaaggagataaactatgt 103958
>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence Length = 180800 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 489 cagatgatacaatgcagtcatg 510 |||||||||||||||||||||| Sbjct: 148126 cagatgatacaatgcagtcatg 148105
>gb|AC191336.3| Gallus gallus BAC clone CH261-157I6 from chromosome z, complete sequence Length = 250761 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 918 gcaggggagttggaacttgaa 938 ||||||||||||||||||||| Sbjct: 156157 gcaggggagttggaacttgaa 156137
>emb|CT831975.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence Length = 2194 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 attcttctgaagcttcaagttctgt 348 ||||| ||||||||||||||||||| Sbjct: 1229 attctcctgaagcttcaagttctgt 1253
>gb|AC187274.3| Gallus gallus BAC clone CH261-5I17 from chromosome z, complete sequence Length = 235399 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 918 gcaggggagttggaacttgaa 938 ||||||||||||||||||||| Sbjct: 206330 gcaggggagttggaacttgaa 206350
>ref|NM_001065779.1| Oryza sativa (japonica cultivar-group) Os07g0235800 (Os07g0235800) mRNA, complete cds Length = 2000 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 attcttctgaagcttcaagttctgt 348 ||||| ||||||||||||||||||| Sbjct: 1168 attctcctgaagcttcaagttctgt 1192
>gb|AC145789.3| Xenopus tropicalis clone CH216-127D2, complete sequence Length = 153030 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 987 aaagaataaaaaatgaagaca 1007 ||||||||||||||||||||| Sbjct: 136005 aaagaataaaaaatgaagaca 136025
>gb|AC146869.2| Xenopus tropicalis clone CH216-121P12, complete sequence Length = 152953 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 986 aaaagaataaaaaatgaagac 1006 ||||||||||||||||||||| Sbjct: 48722 aaaagaataaaaaatgaagac 48702
>gb|AC149508.2| Xenopus tropicalis clone CH216-145B16, complete sequence Length = 164807 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 987 aaagaataaaaaatgaagaca 1007 ||||||||||||||||||||| Sbjct: 104105 aaagaataaaaaatgaagaca 104125
>gb|AC151344.2| Xenopus tropicalis clone ISB-375E10, complete sequence Length = 78035 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 986 aaaagaataaaaaatgaagac 1006 ||||||||||||||||||||| Sbjct: 50521 aaaagaataaaaaatgaagac 50541
>gb|AC149871.2| Xenopus tropicalis clone CH216-115A21, complete sequence Length = 196708 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 987 aaagaataaaaaatgaagaca 1007 ||||||||||||||||||||| Sbjct: 57464 aaagaataaaaaatgaagaca 57484
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 ctgagaaacatcaggcactgc 281 ||||||||||||||||||||| Sbjct: 593049 ctgagaaacatcaggcactgc 593029
>gb|AC116121.8| Mus musculus chromosome 8, clone RP23-79K4, complete sequence Length = 216001 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 982 attcaaaagaataaaaaatga 1002 ||||||||||||||||||||| Sbjct: 143192 attcaaaagaataaaaaatga 143172
>gb|AC004782.1| Homo sapiens chromosome 5, BAC clone 205e20 (LBNL H170), complete sequence Length = 184706 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aactgattatgttaatagatg 127 ||||||||||||||||||||| Sbjct: 46209 aactgattatgttaatagatg 46189
>gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, complete sequence Length = 186195 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 tcaaagtccttggtgatccaa 475 ||||||||||||||||||||| Sbjct: 66769 tcaaagtccttggtgatccaa 66749
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 Length = 1913118 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 caaattatattgatttccttc 161 ||||||||||||||||||||| Sbjct: 1849523 caaattatattgatttccttc 1849503
>gb|DQ374663.1| Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds Length = 1649 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 attcttctgaagcttcaagttctgt 348 ||||| ||||||||||||||||||| Sbjct: 970 attctcctgaagcttcaagttctgt 994
>dbj|AK016835.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933416M07 product:unclassifiable, full insert sequence Length = 1521 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 982 attcaaaagaataaaaaatga 1002 ||||||||||||||||||||| Sbjct: 1496 attcaaaagaataaaaaatga 1516
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 attcttctgaagcttcaagttctgt 348 ||||| ||||||||||||||||||| Sbjct: 7580078 attctcctgaagcttcaagttctgt 7580102
>emb|AL354807.6| Human DNA sequence from clone RP11-522F22 on chromosome 13 Contains a DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1) pseudogene, complete sequence Length = 157135 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 ataatcaattcttctgaagct 337 ||||||||||||||||||||| Sbjct: 115827 ataatcaattcttctgaagct 115847
>gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, complete sequence Length = 237712 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aactgattatgttaatagatg 127 ||||||||||||||||||||| Sbjct: 128103 aactgattatgttaatagatg 128083
>emb|BX640548.14| Zebrafish DNA sequence from clone CH211-198E12 in linkage group 11, complete sequence Length = 231587 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 996 aaaatgaagacaggcgttcca 1016 ||||||||||||||||||||| Sbjct: 64710 aaaatgaagacaggcgttcca 64690
>emb|AL606482.14| Mouse DNA sequence from clone RP23-360H16 on chromosome 11 Contains the genes for olfactory receptors MOR135-7, -8, -10 and -28, three olfactory receptor MOR135 pseudogenes, and the gene for olfactory receptor MOR157-1, complete sequence Length = 199115 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 980 taattcaaaagaataaaaaatgaag 1004 ||||||| ||||||||||||||||| Sbjct: 71701 taattcacaagaataaaaaatgaag 71677
>gb|AC013356.8|AC013356 Homo sapiens chromosome 15 clone RP11-64K12 map 15q14, complete sequence Length = 176910 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 977 gattaattcaaaagaataaaa 997 ||||||||||||||||||||| Sbjct: 71654 gattaattcaaaagaataaaa 71634
>gb|AC073897.6|AC073897 Homo sapiens chromosome 15 clone RP11-718O11 map 15q21.1, complete sequence Length = 180538 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 985 caaaagaataaaaaatgaaga 1005 ||||||||||||||||||||| Sbjct: 124760 caaaagaataaaaaatgaaga 124740
>emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in linkage group 14, complete sequence Length = 108341 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 ggccttcttctgtcagtcaaa 108 ||||||||||||||||||||| Sbjct: 26682 ggccttcttctgtcagtcaaa 26702
>dbj|AK111874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046C12, full insert sequence Length = 2001 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 attcttctgaagcttcaagttctgt 348 ||||| ||||||||||||||||||| Sbjct: 1169 attctcctgaagcttcaagttctgt 1193
>gb|AC119917.10| Mus musculus chromosome 8, clone RP24-247M18, complete sequence Length = 174845 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 982 attcaaaagaataaaaaatga 1002 ||||||||||||||||||||| Sbjct: 69573 attcaaaagaataaaaaatga 69553
>emb|BX470224.5| Zebrafish DNA sequence from clone DKEY-13N15 in linkage group 5, complete sequence Length = 244492 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 981 aattcaaaagaataaaaaatg 1001 ||||||||||||||||||||| Sbjct: 84034 aattcaaaagaataaaaaatg 84054
>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0407H12 Length = 167754 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 attcttctgaagcttcaagttctgt 348 ||||| ||||||||||||||||||| Sbjct: 85488 attctcctgaagcttcaagttctgt 85512
>emb|AL954767.11| Zebrafish DNA sequence from clone CH211-225B14 in linkage group 21, complete sequence Length = 182923 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 981 aattcaaaagaataaaaaatg 1001 ||||||||||||||||||||| Sbjct: 30471 aattcaaaagaataaaaaatg 30451
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 994 aaaaaatgaagacaggcgttccaag 1018 |||||| |||||||||||||||||| Sbjct: 1860885 aaaaaaagaagacaggcgttccaag 1860909
>emb|AL845263.10| Mouse DNA sequence from clone RP23-337L20 on chromosome 2, complete sequence Length = 209967 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 616 tgcaaaacctctgtgggcttt 636 ||||||||||||||||||||| Sbjct: 71667 tgcaaaacctctgtgggcttt 71647 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 259,511,473 Number of extensions: 13593573 Number of successful extensions: 256812 Number of sequences better than 10.0: 54 Number of HSP's gapped: 256803 Number of HSP's successfully gapped: 70 Length of query: 1320 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1297 Effective length of database: 18,503,978,556 Effective search space: 23999660187132 Effective search space used: 23999660187132 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)