ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf173l20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os06g29650:12006.t02669:unspliced-genomic CDP-diacylglyc... 31 5.0
2LOC_Os09g21760:12009.t01910:unspliced-genomic CSN12-like pro... 31 5.0
3LOC_Os11g14530:12011.t01284:unspliced-genomic hypothetical p... 31 6.8
4LOC_Os02g37520:12002.t03390:unspliced-genomic RNA-binding pr... 31 6.9
5LOC_Os08g04770:12008.t00371:unspliced-genomic 4-coumarate--C... 24 8.4
6LOC_Os05g40310:12005.t03570:unspliced-genomic expressed protein 26 9.2
7LOC_Os06g01934:12006.t00089:unspliced-genomic BEL1-related h... 30 9.4
8LOC_Os04g09720:12004.t00806:unspliced-genomic serine carboxy... 30 9.4
9LOC_Os01g10140:12001.t00889:unspliced-genomic RNA-directed R... 30 9.4

>LOC_Os06g29650:12006.t02669:unspliced-genomic CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1, putative,|
            expressed
          Length = 6604
 Score = 31.3 bits (62), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3 / +2

                                            
Query: 339  TACIISIIYLSVYHHETLPDQGSLDVSTCLHE 434
            T C++  +YL + HH+ L    ++D    LHE
Sbjct: 4247 TTCLVQFVYL*I*HHQDLSAFSAMDWMVGLHE 4342



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>LOC_Os09g21760:12009.t01910:unspliced-genomic CSN12-like protein, putative, expressed|
          Length = 3769

 Score = 31.3 bits (62), Expect = 5.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1 / +3

                                                    
Query: 462  CMAWHGTCCAHAGRCLHPKTLDQVAFHGDRRIGRL*I*CR 343
            C+ +HG C   +G C        +   G +RIG L + C+
Sbjct: 1074 CLFFHGLCLCLSGLCSEAILFPNLQVKGPKRIGALYVTCQ 1193



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>LOC_Os11g14530:12011.t01284:unspliced-genomic hypothetical protein|
          Length = 668

 Score = 30.9 bits (61), Expect = 6.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3 / +2

                                           
Query: 351 ISIIYLSVYHHETLPDQGSLDVSTCLHEHSRC 446
           +S+  L ++H   +   GS+D+S CL+  S+C
Sbjct: 308 VSLCILILFHIFFIDS*GSIDISQCLYVKSKC 403



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>LOC_Os02g37520:12002.t03390:unspliced-genomic RNA-binding protein FUS, putative|
          Length = 678

 Score = 30.9 bits (61), Expect = 6.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1 / -2

                          
Query: 462 CMAWHGTCCAHAGRC 418
           C AW+G CCA  G C
Sbjct: 485 CCAWYGPCCAGFGPC 441



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>LOC_Os08g04770:12008.t00371:unspliced-genomic 4-coumarate--CoA ligase 1, putative, expressed|
          Length = 3007

 Score = 24.4 bits (47), Expect(2) = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1 / +1

                                
Query: 406  LWM*APACMSTAGAMPCHAC 465
            LW+  P  M  + A+P H C
Sbjct: 1708 LWLHGPGIMKGSIALPFHGC 1767



 Score = 23.1 bits (44), Expect(2) = 8.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2 / +3

                         
Query: 470  P*IKSLVVLWFNL 508
            P I +LVVLWF+L
Sbjct: 1806 PVIVNLVVLWFSL 1844



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>LOC_Os05g40310:12005.t03570:unspliced-genomic expressed protein|
          Length = 2453

 Score = 25.8 bits (50), Expect(2) = 9.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1 / -3

                                        
Query: 453  WHGTCCAHAGRCLHPKTLDQVAFHGDRR 370
            W   CC   G C  P +    + HG RR
Sbjct: 1077 WTIPCCCCGGPCCKPSS*CAASGHGRRR 994



 Score = 24.9 bits (48), Expect(2) = 9.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3 / -3

                                
Query: 280 LHWVQPQPPFSGAISIAPQLA 218
           L W  P PP  G ++ AP +A
Sbjct: 78  LDWRPPPPPALGQVARAPPMA 16



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>LOC_Os06g01934:12006.t00089:unspliced-genomic BEL1-related homeotic protein 14, putative, expressed|
          Length = 6998

 Score = 30.4 bits (60), Expect = 9.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3 / +1

                                          
Query: 375  YHHETLPDQGSLDVSTCLHEHSRCHAMPCM 464
            Y H TL   G L + TC H H  C    C+
Sbjct: 1348 YMHVTLATVGELVIYTCTHHH*ICGLYTCV 1437



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>LOC_Os04g09720:12004.t00806:unspliced-genomic serine carboxypeptidase 1 precursor, putative, expressed|
          Length = 8641

 Score = 30.4 bits (60), Expect = 9.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2 / +3

                         
Query: 482  ILFRGLHAWHGMA 444
            +  RG+HAWHGMA
Sbjct: 1290 LCIRGMHAWHGMA 1328



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>LOC_Os01g10140:12001.t00889:unspliced-genomic RNA-directed RNA polymerase, putative, expressed|
          Length = 17066

 Score = 30.4 bits (60), Expect = 9.4
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3 / -3

                                                  
Query: 348  IISIIYLSVYHHETLPDQGSLDVSTCLHEHSRCHAMPC 461
            I  I  L +  H+ LP       STC   H  C + PC
Sbjct: 5121 IFPIGILPLPKHQRLPSPSLARFSTCYQHHPPCTSTPC 5008


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 148,526,556
Number of extensions: 2007538
Number of successful extensions: 9205
Number of sequences better than 10.0: 9
Length of query: 174
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 126
Effective length of database: 52,912,542
Effective search space: 6666980292
Effective search space used: 6666980292
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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