| Clone Name | FLbaf173l20 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os06g29650:12006.t02669:unspliced-genomic CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1, putative,| expressed Length = 6604 Score = 31.3 bits (62), Expect = 5.0 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +3 / +2 Query: 339 TACIISIIYLSVYHHETLPDQGSLDVSTCLHE 434 T C++ +YL + HH+ L ++D LHE Sbjct: 4247 TTCLVQFVYL*I*HHQDLSAFSAMDWMVGLHE 4342
>LOC_Os09g21760:12009.t01910:unspliced-genomic CSN12-like protein, putative, expressed| Length = 3769 Score = 31.3 bits (62), Expect = 5.0 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -1 / +3 Query: 462 CMAWHGTCCAHAGRCLHPKTLDQVAFHGDRRIGRL*I*CR 343 C+ +HG C +G C + G +RIG L + C+ Sbjct: 1074 CLFFHGLCLCLSGLCSEAILFPNLQVKGPKRIGALYVTCQ 1193
>LOC_Os11g14530:12011.t01284:unspliced-genomic hypothetical protein| Length = 668 Score = 30.9 bits (61), Expect = 6.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 / +2 Query: 351 ISIIYLSVYHHETLPDQGSLDVSTCLHEHSRC 446 +S+ L ++H + GS+D+S CL+ S+C Sbjct: 308 VSLCILILFHIFFIDS*GSIDISQCLYVKSKC 403
>LOC_Os02g37520:12002.t03390:unspliced-genomic RNA-binding protein FUS, putative| Length = 678 Score = 30.9 bits (61), Expect = 6.9 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = -1 / -2 Query: 462 CMAWHGTCCAHAGRC 418 C AW+G CCA G C Sbjct: 485 CCAWYGPCCAGFGPC 441
>LOC_Os08g04770:12008.t00371:unspliced-genomic 4-coumarate--CoA ligase 1, putative, expressed| Length = 3007 Score = 24.4 bits (47), Expect(2) = 8.4 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +1 / +1 Query: 406 LWM*APACMSTAGAMPCHAC 465 LW+ P M + A+P H C Sbjct: 1708 LWLHGPGIMKGSIALPFHGC 1767 Score = 23.1 bits (44), Expect(2) = 8.4 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +2 / +3 Query: 470 P*IKSLVVLWFNL 508 P I +LVVLWF+L Sbjct: 1806 PVIVNLVVLWFSL 1844
>LOC_Os05g40310:12005.t03570:unspliced-genomic expressed protein| Length = 2453 Score = 25.8 bits (50), Expect(2) = 9.2 Identities = 10/28 (35%), Positives = 12/28 (42%) Frame = -1 / -3 Query: 453 WHGTCCAHAGRCLHPKTLDQVAFHGDRR 370 W CC G C P + + HG RR Sbjct: 1077 WTIPCCCCGGPCCKPSS*CAASGHGRRR 994 Score = 24.9 bits (48), Expect(2) = 9.2 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -3 / -3 Query: 280 LHWVQPQPPFSGAISIAPQLA 218 L W P PP G ++ AP +A Sbjct: 78 LDWRPPPPPALGQVARAPPMA 16
>LOC_Os06g01934:12006.t00089:unspliced-genomic BEL1-related homeotic protein 14, putative, expressed| Length = 6998 Score = 30.4 bits (60), Expect = 9.4 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +3 / +1 Query: 375 YHHETLPDQGSLDVSTCLHEHSRCHAMPCM 464 Y H TL G L + TC H H C C+ Sbjct: 1348 YMHVTLATVGELVIYTCTHHH*ICGLYTCV 1437
>LOC_Os04g09720:12004.t00806:unspliced-genomic serine carboxypeptidase 1 precursor, putative, expressed| Length = 8641 Score = 30.4 bits (60), Expect = 9.4 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -2 / +3 Query: 482 ILFRGLHAWHGMA 444 + RG+HAWHGMA Sbjct: 1290 LCIRGMHAWHGMA 1328
>LOC_Os01g10140:12001.t00889:unspliced-genomic RNA-directed RNA polymerase, putative, expressed| Length = 17066 Score = 30.4 bits (60), Expect = 9.4 Identities = 13/38 (34%), Positives = 16/38 (42%) Frame = +3 / -3 Query: 348 IISIIYLSVYHHETLPDQGSLDVSTCLHEHSRCHAMPC 461 I I L + H+ LP STC H C + PC Sbjct: 5121 IFPIGILPLPKHQRLPSPSLARFSTCYQHHPPCTSTPC 5008 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 148,526,556 Number of extensions: 2007538 Number of successful extensions: 9205 Number of sequences better than 10.0: 9 Length of query: 174 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 126 Effective length of database: 52,912,542 Effective search space: 6666980292 Effective search space used: 6666980292 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)