| Clone Name | FLbaf165d09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001050798.1| Oryza sativa (japonica cultivar-group) Os01g0752200 (Os01g0752200) mRNA, complete cds Length = 1481 Score = 1017 bits (513), Expect = 0.0 Identities = 971/1123 (86%), Gaps = 3/1123 (0%) Strand = Plus / Plus Query: 95 aatcccgacgaggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaac 154 |||||||||||||| |||||||| ||||||| | |||||||||||||| | ||||||| Sbjct: 192 aatcccgacgaggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaac 251 Query: 155 cgcccgcgccagctcaacggcatcaacgacagagtggtatatctcctagcgcagctcttg 214 || ||||||||||| |||| |||| ||| |||||||| |||||||| || ||| ||||| Sbjct: 252 cggccgcgccagctgaacgtcatctccgatagagtggtgtatctcctcgcccagttcttg 311 Query: 215 gagaaatgggagaaagatgacgatgccaagctggtcatcttcaagggagcaggacgagca 274 |||| |||||||||||||| |||||||||||||||||||||||||| || ||||| ||| Sbjct: 312 gagagctgggagaaagatgaggatgccaagctggtcatcttcaagggggctggacgtgca 371 Query: 275 ttttctgctggcggggacctaaagatgttctacgaagggagatcatcagatgattcctgc 334 ||||| ||||| ||||| |||||||||||||| ||||| | |||| ||||| ||||| Sbjct: 372 ttttccgctggtggggatctaaagatgttctatgaaggaaaatca---gatgactcctgt 428 Query: 335 ctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatacaagaaaacc 394 |||||||| || || |||||||| ||||| ||||| || ||||| || || ||||||||| Sbjct: 429 ctcgaggttgtttacaggatgtattggctttgctaccatatccacacgtataagaaaacc 488 Query: 395 acggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggttgctccgctg 454 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct: 489 gcggtggctcttgttaatggacttgtcatgggtggtggtgcagccatggttgctccactg 548 Query: 455 aaatttgcagttgtcacagagaaaacggtttttgccactcccgaggcaagcgttggacta 514 || ||||||||||||||||||||||| || || || || || ||||| || |||||| || Sbjct: 549 aagtttgcagttgtcacagagaaaacagtcttcgcaacccctgaggctagtgttggatta 608 Query: 515 cacacagattgtagcttttcttatatccattctcggctccctggatatttaggggagtac 574 |||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct: 609 cacacagactgcagcttttcttatatccattctagactccctggatatttaggggagtac 668 Query: 575 ctggctttgactggtgctagactgaatgcaaaagaaatgatcgctgccggtcttgctact 634 ||||||||||| ||||| || |||||||||| |||||||| |||||||||||||||||| Sbjct: 669 ctggctttgaccggtgcaaggttgaatgcaaaggaaatgattgctgccggtcttgctact 728 Query: 635 cattttgtcctttctgaaaaattggaagagctcgaaaaacaattactgaatttaaacgca 694 |||||||| | |||||||||||||||||| || |||||| | |||||||||||| || Sbjct: 729 cattttgttccttctgaaaaattggaagaacttgaaaaatgcctgctgaatttaaacaca 788 Query: 695 ggcgacgagtctgcagtccgagctgtcattgaggaattctcaacggatgttcagcttgat 754 || || |||||||| || ||||||| ||||| || |||||||| |||||||| | |||| Sbjct: 789 ggagatgagtctgctgttcgagctgctattgaagagttctcaactgatgttcaacctgat 848 Query: 755 caagagagtattttaaacaagcttccaactatcgacaaatgtttctcagccgagactgtt 814 |||| ||||||||||||||||| ||||||||| ||||||||||||| || |||||| | Sbjct: 849 gaagatagtattttaaacaagctcccaactatcaacaaatgtttctctgctgagactatc 908 Query: 815 gaggagatcttgaaagcacttgattcagaagtgagcattgatggaaaccaatggatagct 874 ||||| ||| | ||||| |||| ||||||| |||||||||||||||||||||||| ||| Sbjct: 909 gaggacatcataaaagcttttgaatcagaagggagcattgatggaaaccaatggatcgct 968 Query: 875 ccagtcctgaagagtatgagaagatcatctcctactggattgaagatcacactgcgatcg 934 |||| |||||| | ||| ||||||||||||||||| | ||||||| || || |||||| Sbjct: 969 acagtactgaagggcatgcgaagatcatctcctacttcactgaagatgactcttcgatcg 1028 Query: 935 gttagagaaggtcggaagcagagtctgcaggaatgtttaaagaaggaatttggactaaca 994 | |||||||||||||||||||| |||| ||||||||| ||||||||||| |||| ||| Sbjct: 1029 atcagagaaggtcggaagcagagcctgccggaatgtttgaagaaggaattccgacttaca 1088 Query: 995 atgaacatcctccgatccgtcgttactggcgatgtctatgagggtattagagctctgagt 1054 ||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| || Sbjct: 1089 atgaacactctccgatctgtagttactggcgatgtctatgagggaattagagctctcagc 1148 Query: 1055 atcgacaaagacaatgcacctaagtggagtcccgcaaccattgaagaggtgaagaatgaa 1114 ||||||||||||||||| |||||||||||||| || ||| |||| ||||| ||||| || Sbjct: 1149 atcgacaaagacaatgcccctaagtggagtcctgctacccttgaggaggtcaagaacgag 1208 Query: 1115 gacattgaccgtgttttcgaaccattcagctcagaacatgagctccaggtcccatctgat 1174 ||||| |||||| |||||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 1209 gacatcgaccgtcttttcgaaccattcagttcagaaaaggagctccaagtcccatctgac 1268 Query: 1175 gattccaacaggtggagcggcaaatacgagcacacggtctatg 1217 ||||||||||| ||||| ||||||| |||||||| ||||||| Sbjct: 1269 gattccaacagatggagtggcaaatttgagcacacagtctatg 1311
>dbj|AK069590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019I11, full insert sequence Length = 1482 Score = 1017 bits (513), Expect = 0.0 Identities = 971/1123 (86%), Gaps = 3/1123 (0%) Strand = Plus / Plus Query: 95 aatcccgacgaggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaac 154 |||||||||||||| |||||||| ||||||| | |||||||||||||| | ||||||| Sbjct: 193 aatcccgacgaggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaac 252 Query: 155 cgcccgcgccagctcaacggcatcaacgacagagtggtatatctcctagcgcagctcttg 214 || ||||||||||| |||| |||| ||| |||||||| |||||||| || ||| ||||| Sbjct: 253 cggccgcgccagctgaacgtcatctccgatagagtggtgtatctcctcgcccagttcttg 312 Query: 215 gagaaatgggagaaagatgacgatgccaagctggtcatcttcaagggagcaggacgagca 274 |||| |||||||||||||| |||||||||||||||||||||||||| || ||||| ||| Sbjct: 313 gagagctgggagaaagatgaggatgccaagctggtcatcttcaagggggctggacgtgca 372 Query: 275 ttttctgctggcggggacctaaagatgttctacgaagggagatcatcagatgattcctgc 334 ||||| ||||| ||||| |||||||||||||| ||||| | |||| ||||| ||||| Sbjct: 373 ttttccgctggtggggatctaaagatgttctatgaaggaaaatca---gatgactcctgt 429 Query: 335 ctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatacaagaaaacc 394 |||||||| || || |||||||| ||||| ||||| || ||||| || || ||||||||| Sbjct: 430 ctcgaggttgtttacaggatgtattggctttgctaccatatccacacgtataagaaaacc 489 Query: 395 acggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggttgctccgctg 454 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct: 490 gcggtggctcttgttaatggacttgtcatgggtggtggtgcagccatggttgctccactg 549 Query: 455 aaatttgcagttgtcacagagaaaacggtttttgccactcccgaggcaagcgttggacta 514 || ||||||||||||||||||||||| || || || || || ||||| || |||||| || Sbjct: 550 aagtttgcagttgtcacagagaaaacagtcttcgcaacccctgaggctagtgttggatta 609 Query: 515 cacacagattgtagcttttcttatatccattctcggctccctggatatttaggggagtac 574 |||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct: 610 cacacagactgcagcttttcttatatccattctagactccctggatatttaggggagtac 669 Query: 575 ctggctttgactggtgctagactgaatgcaaaagaaatgatcgctgccggtcttgctact 634 ||||||||||| ||||| || |||||||||| |||||||| |||||||||||||||||| Sbjct: 670 ctggctttgaccggtgcaaggttgaatgcaaaggaaatgattgctgccggtcttgctact 729 Query: 635 cattttgtcctttctgaaaaattggaagagctcgaaaaacaattactgaatttaaacgca 694 |||||||| | |||||||||||||||||| || |||||| | |||||||||||| || Sbjct: 730 cattttgttccttctgaaaaattggaagaacttgaaaaatgcctgctgaatttaaacaca 789 Query: 695 ggcgacgagtctgcagtccgagctgtcattgaggaattctcaacggatgttcagcttgat 754 || || |||||||| || ||||||| ||||| || |||||||| |||||||| | |||| Sbjct: 790 ggagatgagtctgctgttcgagctgctattgaagagttctcaactgatgttcaacctgat 849 Query: 755 caagagagtattttaaacaagcttccaactatcgacaaatgtttctcagccgagactgtt 814 |||| ||||||||||||||||| ||||||||| ||||||||||||| || |||||| | Sbjct: 850 gaagatagtattttaaacaagctcccaactatcaacaaatgtttctctgctgagactatc 909 Query: 815 gaggagatcttgaaagcacttgattcagaagtgagcattgatggaaaccaatggatagct 874 ||||| ||| | ||||| |||| ||||||| |||||||||||||||||||||||| ||| Sbjct: 910 gaggacatcataaaagcttttgaatcagaagggagcattgatggaaaccaatggatcgct 969 Query: 875 ccagtcctgaagagtatgagaagatcatctcctactggattgaagatcacactgcgatcg 934 |||| |||||| | ||| ||||||||||||||||| | ||||||| || || |||||| Sbjct: 970 acagtactgaagggcatgcgaagatcatctcctacttcactgaagatgactcttcgatcg 1029 Query: 935 gttagagaaggtcggaagcagagtctgcaggaatgtttaaagaaggaatttggactaaca 994 | |||||||||||||||||||| |||| ||||||||| ||||||||||| |||| ||| Sbjct: 1030 atcagagaaggtcggaagcagagcctgccggaatgtttgaagaaggaattccgacttaca 1089 Query: 995 atgaacatcctccgatccgtcgttactggcgatgtctatgagggtattagagctctgagt 1054 ||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| || Sbjct: 1090 atgaacactctccgatctgtagttactggcgatgtctatgagggaattagagctctcagc 1149 Query: 1055 atcgacaaagacaatgcacctaagtggagtcccgcaaccattgaagaggtgaagaatgaa 1114 ||||||||||||||||| |||||||||||||| || ||| |||| ||||| ||||| || Sbjct: 1150 atcgacaaagacaatgcccctaagtggagtcctgctacccttgaggaggtcaagaacgag 1209 Query: 1115 gacattgaccgtgttttcgaaccattcagctcagaacatgagctccaggtcccatctgat 1174 ||||| |||||| |||||||||||||||| |||||| | |||||||| ||||||||||| Sbjct: 1210 gacatcgaccgtcttttcgaaccattcagttcagaaaaggagctccaagtcccatctgac 1269 Query: 1175 gattccaacaggtggagcggcaaatacgagcacacggtctatg 1217 ||||||||||| ||||| ||||||| |||||||| ||||||| Sbjct: 1270 gattccaacagatggagtggcaaatttgagcacacagtctatg 1312
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 135 bits (68), Expect = 5e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 397 ggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggttgctccgctgaa 456 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 31548726 ggtggctcttgttaatggacttgtcatgggtggtggtgcagccatggttgctccactgaa 31548667 Query: 457 atttgcagttgtcacagagaaaac 480 ||||||||||||||||||||||| Sbjct: 31548666 gtttgcagttgtcacagagaaaac 31548643 Score = 119 bits (60), Expect = 3e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 938 agagaaggtcggaagcagagtctgcaggaatgtttaaagaaggaatttggactaacaatg 997 |||||||||||||||||||| |||| ||||||||| ||||||||||| |||| |||||| Sbjct: 31546893 agagaaggtcggaagcagagcctgccggaatgtttgaagaaggaattccgacttacaatg 31546834 Query: 998 aacatcctccgatccgtcgttactggcgatgtctatgagg 1037 |||| |||||||| || |||||||||||||||||||||| Sbjct: 31546833 aacactctccgatctgtagttactggcgatgtctatgagg 31546794 Score = 115 bits (58), Expect = 4e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 563 ttaggggagtacctggctttgactggtgctagactgaatgcaaaagaaatgatcgctgcc 622 ||||||||||||||||||||||| ||||| || |||||||||| |||||||| |||||| Sbjct: 31548052 ttaggggagtacctggctttgaccggtgcaaggttgaatgcaaaggaaatgattgctgcc 31547993 Query: 623 ggtcttgctactcattttgtcctttctgaa 652 |||||||||||||||||||| | ||||||| Sbjct: 31547992 ggtcttgctactcattttgttccttctgaa 31547963 Score = 111 bits (56), Expect = 7e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 1077 agtggagtcccgcaaccattgaagaggtgaagaatgaagacattgaccgtgttttcgaac 1136 |||||||||| || ||| |||| ||||| ||||| || ||||| |||||| ||||||||| Sbjct: 31546576 agtggagtcctgctacccttgaggaggtcaagaacgaggacatcgaccgtcttttcgaac 31546517 Query: 1137 cattcagctcagaacatgagctccaggtcccatctgatgattccaacaggtg 1188 ||||||| |||||| | |||||||| ||||||||||| |||||||||||||| Sbjct: 31546516 cattcagttcagaaaaggagctccaagtcccatctgacgattccaacaggtg 31546465 Score = 91.7 bits (46), Expect = 6e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 839 tcagaagtgagcattgatggaaaccaatggatagctccagtcctgaagagtatgagaaga 898 ||||||| |||||||||||||||||||||||| ||| |||| |||||| | ||| ||||| Sbjct: 31547243 tcagaagggagcattgatggaaaccaatggatcgctacagtactgaagggcatgcgaaga 31547184 Query: 899 tcatctcctactggattgaagatcacactgcgatcggt 936 |||||||||||| | ||||||| || || |||||||| Sbjct: 31547183 tcatctcctacttcactgaagatgactcttcgatcggt 31547146 Score = 85.7 bits (43), Expect = 4e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 497 gaggcaagcgttggactacacacagattgtagcttttcttatatccattctcggctccct 556 ||||| || |||||| |||||||||| || ||||||||||||||||||||| | |||||| Sbjct: 31548318 gaggctagtgttggattacacacagactgcagcttttcttatatccattctagactccct 31548259 Query: 557 ggatatttagg 567 ||||||||||| Sbjct: 31548258 ggatatttagg 31548248 Score = 85.7 bits (43), Expect = 4e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 194 tatctcctagcgcagctcttggagaaatgggagaaagatgacgatgccaagctggtcatc 253 |||||||| || ||| ||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 31549611 tatctcctcgcccagttcttggagagctgggagaaagatgaggatgccaagctggtcatc 31549552 Query: 254 ttcaagg 260 ||||||| Sbjct: 31549551 ttcaagg 31549545 Score = 79.8 bits (40), Expect = 2e-11 Identities = 82/96 (85%) Strand = Plus / Minus Query: 680 ctgaatttaaacgcaggcgacgagtctgcagtccgagctgtcattgaggaattctcaacg 739 |||||||||||| |||| || |||||||| || ||||||| ||||| || |||||||| Sbjct: 31547780 ctgaatttaaacacaggagatgagtctgctgttcgagctgctattgaagagttctcaact 31547721 Query: 740 gatgttcagcttgatcaagagagtattttaaacaag 775 |||||||| | |||| |||| ||||||||||||||| Sbjct: 31547720 gatgttcaacctgatgaagatagtattttaaacaag 31547685 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 105 aggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaaccgcccgcgcc 164 |||| |||||||| ||||||| | |||||||||||||| | ||||||||| ||||||| Sbjct: 31549797 aggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaaccggccgcgcc 31549738 Query: 165 agctcaacggcatcaacgacagagtggt 192 |||| |||| |||| ||| |||||||| Sbjct: 31549737 agctgaacgtcatctccgatagagtggt 31549710 Score = 56.0 bits (28), Expect = 4e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 1035 agggtattagagctctgagtatcgacaaagacaatgcacctaag 1078 |||| ||||||||||| || ||||||||||||||||| |||||| Sbjct: 31546696 agggaattagagctctcagcatcgacaaagacaatgcccctaag 31546653 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Minus Query: 266 ggacgagcattttctgctggcggggacctaaagatgttctacgaagg 312 ||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 31549089 ggacgtgcattttccgctggtggggatctaaagatgttctatgaagg 31549043 Score = 42.1 bits (21), Expect = 5.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 779 ccaactatcgacaaatgtttctcagccgagact 811 ||||||||| ||||||||||||| || |||||| Sbjct: 31547578 ccaactatcaacaaatgtttctctgctgagact 31547546
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 135 bits (68), Expect = 5e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 397 ggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggttgctccgctgaa 456 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 61749 ggtggctcttgttaatggacttgtcatgggtggtggtgcagccatggttgctccactgaa 61690 Query: 457 atttgcagttgtcacagagaaaac 480 ||||||||||||||||||||||| Sbjct: 61689 gtttgcagttgtcacagagaaaac 61666 Score = 119 bits (60), Expect = 3e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 938 agagaaggtcggaagcagagtctgcaggaatgtttaaagaaggaatttggactaacaatg 997 |||||||||||||||||||| |||| ||||||||| ||||||||||| |||| |||||| Sbjct: 59916 agagaaggtcggaagcagagcctgccggaatgtttgaagaaggaattccgacttacaatg 59857 Query: 998 aacatcctccgatccgtcgttactggcgatgtctatgagg 1037 |||| |||||||| || |||||||||||||||||||||| Sbjct: 59856 aacactctccgatctgtagttactggcgatgtctatgagg 59817 Score = 115 bits (58), Expect = 4e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 563 ttaggggagtacctggctttgactggtgctagactgaatgcaaaagaaatgatcgctgcc 622 ||||||||||||||||||||||| ||||| || |||||||||| |||||||| |||||| Sbjct: 61075 ttaggggagtacctggctttgaccggtgcaaggttgaatgcaaaggaaatgattgctgcc 61016 Query: 623 ggtcttgctactcattttgtcctttctgaa 652 |||||||||||||||||||| | ||||||| Sbjct: 61015 ggtcttgctactcattttgttccttctgaa 60986 Score = 111 bits (56), Expect = 7e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 1077 agtggagtcccgcaaccattgaagaggtgaagaatgaagacattgaccgtgttttcgaac 1136 |||||||||| || ||| |||| ||||| ||||| || ||||| |||||| ||||||||| Sbjct: 59599 agtggagtcctgctacccttgaggaggtcaagaacgaggacatcgaccgtcttttcgaac 59540 Query: 1137 cattcagctcagaacatgagctccaggtcccatctgatgattccaacaggtg 1188 ||||||| |||||| | |||||||| ||||||||||| |||||||||||||| Sbjct: 59539 cattcagttcagaaaaggagctccaagtcccatctgacgattccaacaggtg 59488 Score = 91.7 bits (46), Expect = 6e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 839 tcagaagtgagcattgatggaaaccaatggatagctccagtcctgaagagtatgagaaga 898 ||||||| |||||||||||||||||||||||| ||| |||| |||||| | ||| ||||| Sbjct: 60266 tcagaagggagcattgatggaaaccaatggatcgctacagtactgaagggcatgcgaaga 60207 Query: 899 tcatctcctactggattgaagatcacactgcgatcggt 936 |||||||||||| | ||||||| || || |||||||| Sbjct: 60206 tcatctcctacttcactgaagatgactcttcgatcggt 60169 Score = 85.7 bits (43), Expect = 4e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 497 gaggcaagcgttggactacacacagattgtagcttttcttatatccattctcggctccct 556 ||||| || |||||| |||||||||| || ||||||||||||||||||||| | |||||| Sbjct: 61341 gaggctagtgttggattacacacagactgcagcttttcttatatccattctagactccct 61282 Query: 557 ggatatttagg 567 ||||||||||| Sbjct: 61281 ggatatttagg 61271 Score = 85.7 bits (43), Expect = 4e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 194 tatctcctagcgcagctcttggagaaatgggagaaagatgacgatgccaagctggtcatc 253 |||||||| || ||| ||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 62634 tatctcctcgcccagttcttggagagctgggagaaagatgaggatgccaagctggtcatc 62575 Query: 254 ttcaagg 260 ||||||| Sbjct: 62574 ttcaagg 62568 Score = 79.8 bits (40), Expect = 2e-11 Identities = 82/96 (85%) Strand = Plus / Minus Query: 680 ctgaatttaaacgcaggcgacgagtctgcagtccgagctgtcattgaggaattctcaacg 739 |||||||||||| |||| || |||||||| || ||||||| ||||| || |||||||| Sbjct: 60803 ctgaatttaaacacaggagatgagtctgctgttcgagctgctattgaagagttctcaact 60744 Query: 740 gatgttcagcttgatcaagagagtattttaaacaag 775 |||||||| | |||| |||| ||||||||||||||| Sbjct: 60743 gatgttcaacctgatgaagatagtattttaaacaag 60708 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 105 aggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaaccgcccgcgcc 164 |||| |||||||| ||||||| | |||||||||||||| | ||||||||| ||||||| Sbjct: 62820 aggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaaccggccgcgcc 62761 Query: 165 agctcaacggcatcaacgacagagtggt 192 |||| |||| |||| ||| |||||||| Sbjct: 62760 agctgaacgtcatctccgatagagtggt 62733 Score = 56.0 bits (28), Expect = 4e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 1035 agggtattagagctctgagtatcgacaaagacaatgcacctaag 1078 |||| ||||||||||| || ||||||||||||||||| |||||| Sbjct: 59719 agggaattagagctctcagcatcgacaaagacaatgcccctaag 59676 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Minus Query: 266 ggacgagcattttctgctggcggggacctaaagatgttctacgaagg 312 ||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 62112 ggacgtgcattttccgctggtggggatctaaagatgttctatgaagg 62066 Score = 42.1 bits (21), Expect = 5.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 779 ccaactatcgacaaatgtttctcagccgagact 811 ||||||||| ||||||||||||| || |||||| Sbjct: 60601 ccaactatcaacaaatgtttctctgctgagact 60569
>dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046E05 Length = 162776 Score = 135 bits (68), Expect = 5e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 397 ggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggttgctccgctgaa 456 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 142790 ggtggctcttgttaatggacttgtcatgggtggtggtgcagccatggttgctccactgaa 142731 Query: 457 atttgcagttgtcacagagaaaac 480 ||||||||||||||||||||||| Sbjct: 142730 gtttgcagttgtcacagagaaaac 142707 Score = 119 bits (60), Expect = 3e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 938 agagaaggtcggaagcagagtctgcaggaatgtttaaagaaggaatttggactaacaatg 997 |||||||||||||||||||| |||| ||||||||| ||||||||||| |||| |||||| Sbjct: 140957 agagaaggtcggaagcagagcctgccggaatgtttgaagaaggaattccgacttacaatg 140898 Query: 998 aacatcctccgatccgtcgttactggcgatgtctatgagg 1037 |||| |||||||| || |||||||||||||||||||||| Sbjct: 140897 aacactctccgatctgtagttactggcgatgtctatgagg 140858 Score = 115 bits (58), Expect = 4e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 563 ttaggggagtacctggctttgactggtgctagactgaatgcaaaagaaatgatcgctgcc 622 ||||||||||||||||||||||| ||||| || |||||||||| |||||||| |||||| Sbjct: 142116 ttaggggagtacctggctttgaccggtgcaaggttgaatgcaaaggaaatgattgctgcc 142057 Query: 623 ggtcttgctactcattttgtcctttctgaa 652 |||||||||||||||||||| | ||||||| Sbjct: 142056 ggtcttgctactcattttgttccttctgaa 142027 Score = 111 bits (56), Expect = 7e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 1077 agtggagtcccgcaaccattgaagaggtgaagaatgaagacattgaccgtgttttcgaac 1136 |||||||||| || ||| |||| ||||| ||||| || ||||| |||||| ||||||||| Sbjct: 140640 agtggagtcctgctacccttgaggaggtcaagaacgaggacatcgaccgtcttttcgaac 140581 Query: 1137 cattcagctcagaacatgagctccaggtcccatctgatgattccaacaggtg 1188 ||||||| |||||| | |||||||| ||||||||||| |||||||||||||| Sbjct: 140580 cattcagttcagaaaaggagctccaagtcccatctgacgattccaacaggtg 140529 Score = 91.7 bits (46), Expect = 6e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 839 tcagaagtgagcattgatggaaaccaatggatagctccagtcctgaagagtatgagaaga 898 ||||||| |||||||||||||||||||||||| ||| |||| |||||| | ||| ||||| Sbjct: 141307 tcagaagggagcattgatggaaaccaatggatcgctacagtactgaagggcatgcgaaga 141248 Query: 899 tcatctcctactggattgaagatcacactgcgatcggt 936 |||||||||||| | ||||||| || || |||||||| Sbjct: 141247 tcatctcctacttcactgaagatgactcttcgatcggt 141210 Score = 85.7 bits (43), Expect = 4e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 497 gaggcaagcgttggactacacacagattgtagcttttcttatatccattctcggctccct 556 ||||| || |||||| |||||||||| || ||||||||||||||||||||| | |||||| Sbjct: 142382 gaggctagtgttggattacacacagactgcagcttttcttatatccattctagactccct 142323 Query: 557 ggatatttagg 567 ||||||||||| Sbjct: 142322 ggatatttagg 142312 Score = 85.7 bits (43), Expect = 4e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 194 tatctcctagcgcagctcttggagaaatgggagaaagatgacgatgccaagctggtcatc 253 |||||||| || ||| ||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 143675 tatctcctcgcccagttcttggagagctgggagaaagatgaggatgccaagctggtcatc 143616 Query: 254 ttcaagg 260 ||||||| Sbjct: 143615 ttcaagg 143609 Score = 79.8 bits (40), Expect = 2e-11 Identities = 82/96 (85%) Strand = Plus / Minus Query: 680 ctgaatttaaacgcaggcgacgagtctgcagtccgagctgtcattgaggaattctcaacg 739 |||||||||||| |||| || |||||||| || ||||||| ||||| || |||||||| Sbjct: 141844 ctgaatttaaacacaggagatgagtctgctgttcgagctgctattgaagagttctcaact 141785 Query: 740 gatgttcagcttgatcaagagagtattttaaacaag 775 |||||||| | |||| |||| ||||||||||||||| Sbjct: 141784 gatgttcaacctgatgaagatagtattttaaacaag 141749 Score = 63.9 bits (32), Expect = 1e-06 Identities = 74/88 (84%) Strand = Plus / Minus Query: 105 aggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaaccgcccgcgcc 164 |||| |||||||| ||||||| | |||||||||||||| | ||||||||| ||||||| Sbjct: 143861 aggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaaccggccgcgcc 143802 Query: 165 agctcaacggcatcaacgacagagtggt 192 |||| |||| |||| ||| |||||||| Sbjct: 143801 agctgaacgtcatctccgatagagtggt 143774 Score = 56.0 bits (28), Expect = 4e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 1035 agggtattagagctctgagtatcgacaaagacaatgcacctaag 1078 |||| ||||||||||| || ||||||||||||||||| |||||| Sbjct: 140760 agggaattagagctctcagcatcgacaaagacaatgcccctaag 140717 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Minus Query: 266 ggacgagcattttctgctggcggggacctaaagatgttctacgaagg 312 ||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 143153 ggacgtgcattttccgctggtggggatctaaagatgttctatgaagg 143107 Score = 42.1 bits (21), Expect = 5.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 779 ccaactatcgacaaatgtttctcagccgagact 811 ||||||||| ||||||||||||| || |||||| Sbjct: 141642 ccaactatcaacaaatgtttctctgctgagact 141610
>gb|BT026035.1| Arabidopsis thaliana At1g06550 mRNA, complete cds Length = 1164 Score = 61.9 bits (31), Expect = 6e-06 Identities = 142/179 (79%) Strand = Plus / Plus Query: 326 gattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatac 385 ||||| ||||| ||||| || || ||||||||||||| || ||||| ||||| |||||| Sbjct: 253 gattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccacacatac 312 Query: 386 aagaaaaccacggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggtt 445 ||||| || |||| |||| ||||||||| | |||||||||||||| || || | Sbjct: 313 aagaagacgcaggtgtctctggttaatggaatatcgatgggtggaggtgcagcattgatg 372 Query: 446 gctccgctgaaatttgcagttgtcacagagaaaacggtttttgccactcccgaggcaag 504 | || |||| ||| ||||||| ||||||||||| |||||||| ||||| || ||||| Sbjct: 373 gtccctatgaagttttcagttgtgacagagaaaactgtttttgcgactccagaagcaag 431
>ref|NM_100534.2| Arabidopsis thaliana 3-hydroxyisobutyryl-CoA hydrolase/ catalytic (AT1G06550) mRNA, complete cds Length = 1344 Score = 61.9 bits (31), Expect = 6e-06 Identities = 142/179 (79%) Strand = Plus / Plus Query: 326 gattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatac 385 ||||| ||||| ||||| || || ||||||||||||| || ||||| ||||| |||||| Sbjct: 253 gattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccacacatac 312 Query: 386 aagaaaaccacggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggtt 445 ||||| || |||| |||| ||||||||| | |||||||||||||| || || | Sbjct: 313 aagaagacgcaggtgtctctggttaatggaatatcgatgggtggaggtgcagcattgatg 372 Query: 446 gctccgctgaaatttgcagttgtcacagagaaaacggtttttgccactcccgaggcaag 504 | || |||| ||| ||||||| ||||||||||| |||||||| ||||| || ||||| Sbjct: 373 gtccctatgaagttttcagttgtgacagagaaaactgtttttgcgactccagaagcaag 431
>dbj|AK221578.1| Arabidopsis thaliana mRNA for 3-hydroxyisobutyryl-coenzyme A hydrolase, complete cds, clone: RAFL07-83-C04 Length = 1437 Score = 61.9 bits (31), Expect = 6e-06 Identities = 142/179 (79%) Strand = Plus / Plus Query: 326 gattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatac 385 ||||| ||||| ||||| || || ||||||||||||| || ||||| ||||| |||||| Sbjct: 310 gattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccacacatac 369 Query: 386 aagaaaaccacggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggtt 445 ||||| || |||| |||| ||||||||| | |||||||||||||| || || | Sbjct: 370 aagaagacgcaggtgtctctggttaatggaatatcgatgggtggaggtgcagcattgatg 429 Query: 446 gctccgctgaaatttgcagttgtcacagagaaaacggtttttgccactcccgaggcaag 504 | || |||| ||| ||||||| ||||||||||| |||||||| ||||| || ||||| Sbjct: 430 gtccctatgaagttttcagttgtgacagagaaaactgtttttgcgactccagaagcaag 488
>gb|BT022051.1| Arabidopsis thaliana At1g06550 gene, complete cds Length = 1343 Score = 61.9 bits (31), Expect = 6e-06 Identities = 142/179 (79%) Strand = Plus / Plus Query: 326 gattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatac 385 ||||| ||||| ||||| || || ||||||||||||| || ||||| ||||| |||||| Sbjct: 268 gattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccacacatac 327 Query: 386 aagaaaaccacggtggctcttgttaatggacttgtcatgggtggaggtgcggccatggtt 445 ||||| || |||| |||| ||||||||| | |||||||||||||| || || | Sbjct: 328 aagaagacgcaggtgtctctggttaatggaatatcgatgggtggaggtgcagcattgatg 387 Query: 446 gctccgctgaaatttgcagttgtcacagagaaaacggtttttgccactcccgaggcaag 504 | || |||| ||| ||||||| ||||||||||| |||||||| ||||| || ||||| Sbjct: 388 gtccctatgaagttttcagttgtgacagagaaaactgtttttgcgactccagaagcaag 446
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I, complete sequence Length = 93724 Score = 52.0 bits (26), Expect = 0.006 Identities = 59/70 (84%) Strand = Plus / Plus Query: 321 cagatgattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccata 380 |||| ||||| ||||| ||||| || || ||||||||||||| || ||||| ||||| | Sbjct: 48047 cagaggattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccaca 48106 Query: 381 catacaagaa 390 |||||||||| Sbjct: 48107 catacaagaa 48116
>gb|AC102907.11| Mus musculus chromosome 1, clone RP24-291E1, complete sequence Length = 185121 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1140 tcagctcagaacatgagctccag 1162 ||||||||||||||||||||||| Sbjct: 19598 tcagctcagaacatgagctccag 19620
>gb|AC164068.2| Mus musculus chromosome 1, clone RP23-5H15, complete sequence Length = 178006 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1140 tcagctcagaacatgagctccag 1162 ||||||||||||||||||||||| Sbjct: 116606 tcagctcagaacatgagctccag 116584
>gb|AY525548.1| Homo sapiens cyclin-dependent kinase-like 1 (CDC2-related kinase) (CDKL1) gene, complete cds Length = 69779 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1286 ttggttttgccatgtgacatgc 1307 |||||||||||||||||||||| Sbjct: 27083 ttggttttgccatgtgacatgc 27104
>emb|CT009577.5| Mouse DNA sequence from clone RP23-24C24 on chromosome 16, complete sequence Length = 258862 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 578 gctttgactggtgctagactgaatgc 603 |||||||||||||||||||| ||||| Sbjct: 193175 gctttgactggtgctagactcaatgc 193200
>gb|AC154736.2| Mus musculus BAC clone RP24-389J14 from chromosome 16, complete sequence Length = 141092 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 578 gctttgactggtgctagactgaatgc 603 |||||||||||||||||||| ||||| Sbjct: 116092 gctttgactggtgctagactcaatgc 116117
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 399 tggctcttgttaatggacttgt 420 |||||||||||||||||||||| Sbjct: 1419726 tggctcttgttaatggacttgt 1419747
>emb|AL359397.3|CNS05TE2 Human chromosome 14 DNA sequence BAC R-247L20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168193 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1286 ttggttttgccatgtgacatgc 1307 |||||||||||||||||||||| Sbjct: 119979 ttggttttgccatgtgacatgc 119958
>gb|AC007057.3|AC007057 Homo sapiens chromosome 14 clone containing genes for UP50 and Trip230, complete sequence Length = 171901 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1374 agcaataaagcaactgagattt 1395 |||||||||||||||||||||| Sbjct: 126368 agcaataaagcaactgagattt 126389
>emb|AL049872.3|CNS0000R Human chromosome 14 DNA sequence BAC R-529H20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172674 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1374 agcaataaagcaactgagattt 1395 |||||||||||||||||||||| Sbjct: 57612 agcaataaagcaactgagattt 57633
>emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chromosome 4, complete sequence Length = 252953 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 217 gaaatgggagaaagatgacgat 238 |||||||||||||||||||||| Sbjct: 74756 gaaatgggagaaagatgacgat 74735
>gb|AC187772.2| Pongo pygmaeus abelii BAC clone CH276-8H12 from chromosome unknown, complete sequence Length = 208388 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1290 ttttgccatgtgacatgcatg 1310 ||||||||||||||||||||| Sbjct: 85394 ttttgccatgtgacatgcatg 85374
>gb|DQ384498.1| Homo sapiens clone fa0739 genomic sequence Length = 39320 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 gctgaaatttgcagttgtcac 471 ||||||||||||||||||||| Sbjct: 33540 gctgaaatttgcagttgtcac 33520
>gb|DQ384497.1| Homo sapiens clone fa0706 genomic sequence Length = 44203 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 gctgaaatttgcagttgtcac 471 ||||||||||||||||||||| Sbjct: 25692 gctgaaatttgcagttgtcac 25672
>gb|DQ384496.1| Homo sapiens clone fa0705 genomic sequence Length = 41762 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 gctgaaatttgcagttgtcac 471 ||||||||||||||||||||| Sbjct: 29800 gctgaaatttgcagttgtcac 29780
>gb|DQ384495.1| Homo sapiens clone fa0670 genomic sequence Length = 36597 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 gctgaaatttgcagttgtcac 471 ||||||||||||||||||||| Sbjct: 32995 gctgaaatttgcagttgtcac 32975
>gb|DQ384494.1| Homo sapiens clone fa0666 genomic sequence Length = 38906 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 gctgaaatttgcagttgtcac 471 ||||||||||||||||||||| Sbjct: 38791 gctgaaatttgcagttgtcac 38771
>gb|DQ384493.1| Homo sapiens clone fa0665 genomic sequence Length = 44723 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 gctgaaatttgcagttgtcac 471 ||||||||||||||||||||| Sbjct: 41850 gctgaaatttgcagttgtcac 41830
>gb|AC183795.2| Pan troglodytes BAC clone CH251-631L8 from chromosome 10, complete sequence Length = 202558 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1290 ttttgccatgtgacatgcatg 1310 ||||||||||||||||||||| Sbjct: 115960 ttttgccatgtgacatgcatg 115940
>emb|CR394535.19| Zebrafish DNA sequence from clone CH211-198P19 in linkage group 3, complete sequence Length = 190173 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 595 actgaatgcaaaagaaatgat 615 ||||||||||||||||||||| Sbjct: 15043 actgaatgcaaaagaaatgat 15023
>emb|CT797314.2| Pan troglodytes chromosome X clone CH251-171B18 map Xq28, complete sequence Length = 178731 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 tgctatcacatccatacatacaaga 389 ||||||||||| ||||||||||||| Sbjct: 139129 tgctatcacatgcatacatacaaga 139153
>gb|AC160545.8| Mus musculus chromosome 1, clone RP23-217K18, complete sequence Length = 240081 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1234 atcaccacatagcccaggctg 1254 ||||||||||||||||||||| Sbjct: 13685 atcaccacatagcccaggctg 13665
>ref|NM_201578.1| Danio rerio proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 (psmd12), mRNA gb|BC042325.1| Danio rerio proteasome (prosome, macropain) 26S subunit, non-ATPase, 12, mRNA (cDNA clone MGC:55698 IMAGE:3815828), complete cds Length = 1558 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 625 tcttgctactcattttgtcctttct 649 ||||||||| ||||||||||||||| Sbjct: 1468 tcttgctacacattttgtcctttct 1492
>gb|AC125583.3| Rattus norvegicus 4 BAC CH230-1A7 (Children's Hospital Oakland Research Institute) complete sequence Length = 205786 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1300 tgacatgcatgtttgagtgca 1320 ||||||||||||||||||||| Sbjct: 72722 tgacatgcatgtttgagtgca 72742
>gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, complete sequence Length = 205816 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1099 agaggtgaagaatgaagacat 1119 ||||||||||||||||||||| Sbjct: 189040 agaggtgaagaatgaagacat 189020
>gb|AC126427.4| Mus musculus BAC clone RP24-365B12 from chromosome 15, complete sequence Length = 151506 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 875 ccagtcctgaagagtatgagaagat 899 ||||||||||||| ||||||||||| Sbjct: 18325 ccagtcctgaagaatatgagaagat 18349
>gb|AC124108.15| Mus musculus chromosome 1, clone RP24-340N18, complete sequence Length = 178775 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1234 atcaccacatagcccaggctg 1254 ||||||||||||||||||||| Sbjct: 15879 atcaccacatagcccaggctg 15899
>gb|AC094253.7| Rattus norvegicus 4 BAC CH230-3E12 (Children's Hospital Oakland Research Institute) complete sequence Length = 209550 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1300 tgacatgcatgtttgagtgca 1320 ||||||||||||||||||||| Sbjct: 164012 tgacatgcatgtttgagtgca 164032
>gb|AC161165.5| Mus musculus chromosome 15, clone RP23-278C10, complete sequence Length = 176135 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1235 tcaccacatagcccaggctgt 1255 ||||||||||||||||||||| Sbjct: 88224 tcaccacatagcccaggctgt 88204
>gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, complete sequence Length = 157606 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 458 tttgcagttgtcacagagaaa 478 ||||||||||||||||||||| Sbjct: 44462 tttgcagttgtcacagagaaa 44442
>emb|CR847534.13| Zebrafish DNA sequence from clone DKEY-27E20 in linkage group 3, complete sequence Length = 211145 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 595 actgaatgcaaaagaaatgat 615 ||||||||||||||||||||| Sbjct: 108645 actgaatgcaaaagaaatgat 108665
>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete sequence Length = 188660 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 ttggagaaatgggagaaagat 232 ||||||||||||||||||||| Sbjct: 155679 ttggagaaatgggagaaagat 155699
>emb|CR730914.1|CNS0GQX3 Tetraodon nigroviridis full-length cDNA Length = 1211 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 815 gaggagatcttgaaagcactt 835 ||||||||||||||||||||| Sbjct: 950 gaggagatcttgaaagcactt 970
>gb|AC093909.2| Homo sapiens BAC clone RP11-756P10 from 4, complete sequence Length = 181886 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 gctgaaatttgcagttgtcac 471 ||||||||||||||||||||| Sbjct: 61728 gctgaaatttgcagttgtcac 61708
>emb|AL390125.23| Human DNA sequence from clone RP11-43O2 on chromosome 6, complete sequence Length = 140782 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1290 ttttgccatgtgacatgcatg 1310 ||||||||||||||||||||| Sbjct: 54151 ttttgccatgtgacatgcatg 54131
>emb|AL355334.26| Human DNA sequence from clone RP11-399L7 on chromosome 10 Contains the cathepsin L-like 1 (CTSLL1) pseudogene, a novel gene, a pseudogene similar to part of ring finger protein 3 (RNF3), the 5' end of the MINPP1 gene for multiple inositol polyphosphate histidine phosphatase 1 and a CpG island, complete sequence Length = 173390 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1290 ttttgccatgtgacatgcatg 1310 ||||||||||||||||||||| Sbjct: 116744 ttttgccatgtgacatgcatg 116724
>emb|AL078595.12|HSDJ399J4 Human DNA sequence from clone RP3-399J4 on chromosome 6q15-16.3 Contains a cytochrome B pseudogene and a ribosomal protein (RPL7A) pseudogene, complete sequence Length = 124280 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1287 tggttttgccatgtgacatgc 1307 ||||||||||||||||||||| Sbjct: 80975 tggttttgccatgtgacatgc 80995
>emb|AL035424.8|HS22D12 Human DNA sequence from clone RP6-22D12 on chromosome Xq21.1-21.33 Contains part of the KLHL4 gene for kelch-like 4 (Drosophila), complete sequence Length = 69827 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1292 ttgccatgtgacatgcatgtt 1312 ||||||||||||||||||||| Sbjct: 8679 ttgccatgtgacatgcatgtt 8659
>emb|CR759902.6| Zebrafish DNA sequence from clone CH211-152N14, complete sequence Length = 168289 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 625 tcttgctactcattttgtcctttct 649 ||||||||| ||||||||||||||| Sbjct: 28559 tcttgctacacattttgtcctttct 28583
>emb|AL663110.6| Mouse DNA sequence from clone RP23-224P22 on chromosome 11 Contains part of the Abca13 gene for ATP-binding cassette sub-family A (ABC1) member 13, complete sequence Length = 158039 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1234 atcaccacatagcccaggctg 1254 ||||||||||||||||||||| Sbjct: 18727 atcaccacatagcccaggctg 18707
>gb|AC155655.8| Mus musculus 6 BAC RP24-66L18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 203618 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1099 agaggtgaagaatgaagacat 1119 ||||||||||||||||||||| Sbjct: 161060 agaggtgaagaatgaagacat 161080
>gb|AC016526.6|AC016526 Homo sapiens chromosome 14 clone RP11-361H10 map 14q24.3, complete sequence Length = 179984 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1290 ttttgccatgtgacatgcatg 1310 ||||||||||||||||||||| Sbjct: 138042 ttttgccatgtgacatgcatg 138062
>dbj|AK108927.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A02, full insert sequence Length = 2158 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 653 aaattggaagagctcgaaaaa 673 ||||||||||||||||||||| Sbjct: 1450 aaattggaagagctcgaaaaa 1470
>ref|XM_321329.2| Anopheles gambiae str. PEST ENSANGP00000013280 (ENSANGG00000010791), partial mRNA Length = 654 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 tggaagagctcgaaaaacaat 677 ||||||||||||||||||||| Sbjct: 227 tggaagagctcgaaaaacaat 247
>ref|XM_320176.2| Anopheles gambiae str. PEST ENSANGP00000011215 (ENSANGG00000008726), partial mRNA Length = 648 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1183 caggtggagcggcaaatacga 1203 ||||||||||||||||||||| Sbjct: 544 caggtggagcggcaaatacga 524
>emb|AJ621579.1| Bacteriophage TuIa 30.7 gene, 30.6A gene and 30.5 gene Length = 1418 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 668 gaaaaacaattactgaattta 688 ||||||||||||||||||||| Sbjct: 749 gaaaaacaattactgaattta 729
>gb|AC158363.2| Mus musculus BAC clone RP23-214J3 from chromosome 15, complete sequence Length = 228138 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 875 ccagtcctgaagagtatgagaagat 899 ||||||||||||| ||||||||||| Sbjct: 164028 ccagtcctgaagaatatgagaagat 164052 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 253,483,561 Number of extensions: 13535170 Number of successful extensions: 283473 Number of sequences better than 10.0: 56 Number of HSP's gapped: 283469 Number of HSP's successfully gapped: 93 Length of query: 1415 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1392 Effective length of database: 18,503,978,556 Effective search space: 25757538149952 Effective search space used: 25757538149952 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)