>LOC_Os12g37850:12012.t03466:unspliced-genomic expressed protein|
Length = 2565
Score = 75.8 bits (159), Expect(3) = 6e-29
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = -3 / -3
Query: 220 SSFIFCIFSGSVSCMFFLNCSLTMETRSPVLC 125
SSFIFCIFSGSVSCMFFLNCSLT+ET SPVLC
Sbjct: 2083 SSFIFCIFSGSVSCMFFLNCSLTIETISPVLC 1988
Score = 53.3 bits (110), Expect(3) = 6e-29
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -3 / -3
Query: 313 IVYFQLS*PENLRPVIFSDSYIM*LIRPRAA 221
IV FQ+S* ENLRPVIFSDSY M*LIRP AA
Sbjct: 2278 IV*FQIS*LENLRPVIFSDSYKM*LIRPLAA 2186
Score = 41.8 bits (85), Expect(3) = 6e-29
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3 / -3
Query: 151 METRSPVLCC*LPMNLALLKHSRYNW 74
ME P +C * PMNLALLKHSRY++
Sbjct: 1147 MEK*KPNMCT*CPMNLALLKHSRYSY 1070
Score = 80.8 bits (170), Expect(3) = 8e-29
Identities = 31/35 (88%), Positives = 35/35 (100%)
Frame = +3 / +3
Query: 117 SQQHNTGLLVSMVREQFKKNMHETDPEKIQKMKDD 221
+Q+HNTGL+VSMVREQFKKNMHETDPEKIQKMKD+
Sbjct: 1980 TQKHNTGLIVSMVREQFKKNMHETDPEKIQKMKDE 2084
Score = 58.8 bits (122), Expect(3) = 8e-29
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +3 / +3
Query: 222 AARGLINHIIYESEKMTGRKFSG*ES*K*TIGI 320
AARGLINHI+YESEKMTGRKFS *E *TI +
Sbjct: 2187 AARGLINHILYESEKMTGRKFSS*EIWN*TISV 2285
Score = 24.9 bits (48), Expect(3) = 8e-29
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 332 LNSGLILWLLNCF 370
+NS +ILWLLN F
Sbjct: 2300 VNSDVILWLLNYF 2338
Score = 66.1 bits (138), Expect(2) = 3e-19
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -2 / -2
Query: 221 IILHFLYLLWISFMHVFLELFPHHGNKKPCIMLLT 117
+ILHFLYLLWISFMHVFL+L P+H N KP I+ L+
Sbjct: 2084 LILHFLYLLWISFMHVFLKLLPYH*NNKPRIVFLS 1980
Score = 48.3 bits (99), Expect(2) = 3e-19
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = -2 / -2
Query: 392 MVLVSEEKNNSTAIGSSHCSIHTGYADSLLSTFLT*EFTPRHLLGFIYYVIDKAPCR 222
+V ++ N++T + + D L+ FLT*+F HLL FI VIDKAPCR
Sbjct: 2357 LVPKKKQSNSATTRSHHCLLLFIQHTDCLVPNFLT*KFASCHLLRFIQNVIDKAPCR 2187
Score = 63.4 bits (132), Expect(2) = 4e-17
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +1 / +1
Query: 124 NIIQGFLFPW*GNSSRKTCMKLIQRRYRK*RMMR 225
N I+G LF W*G+S RKTCMKLIQRRYRK*RM +
Sbjct: 1987 NTIRGLLFQW*GSSLRKTCMKLIQRRYRK*RMSK 2088
Score = 44.1 bits (90), Expect(2) = 4e-17
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2 / +2
Query: 221 CGTGPYQSHNI*IREDDGA*ILRLRKLKVD 310
CG GPYQSH +*I EDD I +LR L++D
Sbjct: 2186 CGKGPYQSHFV*I*EDDRTQIFKLRNLELD 2275
Score = 57.0 bits (118), Expect(2) = 4e-13
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2 / +2
Query: 119 SAT*YRASCFHGEGTVQEKHA*N*SREDTENEG* 220
S T Y A CF+G+G V EKHA*N*SREDTENEG*
Sbjct: 1982 SETQYGAYCFNGKGAV*EKHA*N*SREDTENEG* 2083
Score = 36.8 bits (74), Expect(2) = 4e-13
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1 / +1
Query: 220 MRHGALSIT*YMNPRR*RGVNSQVKKVESRLS 315
+R GALSIT MN RR*+ N QVKK +R S
Sbjct: 2185 VRQGALSITFCMNLRR*QDANFQVKKFGTRQS 2280
Score = 42.8 bits (87), Expect(2) = 3e-07
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = -1 / -1
Query: 195 LDQFHACFS*TVPSPWKQEALYYVAD 118
LDQFHACFS*T P P KQ A Y V++
Sbjct: 2058 LDQFHACFS*TAPLPLKQ*APYCVSE 1981
Score = 34.5 bits (69), Expect(2) = 3e-07
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = -1 / -1
Query: 309 STFNFLNLRIYAPSSSRIHILCD**G 232
S+ FLNL+I SSS+IH CD**G
Sbjct: 2274 SSSKFLNLKICVLSSSQIHTKCD**G 2197
Score = 39.1 bits (79), Expect = 0.026
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3 / +3
Query: 78 LYRECLRRAKFIGSQQHNTGLLVSMV 155
LYRECLRRA+FIG Q H G S++
Sbjct: 1074 LYRECLRRARFIGHQVHIFGFHFSIL 1151
>LOC_Os04g49570:12004.t04471:unspliced-genomic glutamate receptor 3.3 precursor, putative, expressed|
Length = 4830
Score = 30.9 bits (61), Expect(2) = 3.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3 / +1
Query: 226 AASSFIFCIFSGSVSCMFFLNC 161
++ SFIFC F GS+ +F C
Sbjct: 421 SSGSFIFCFFGGSLQVLFLEEC 486
Score = 22.6 bits (43), Expect(2) = 3.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -3 / +2
Query: 181 CMFFLNCSLTMETRSPVLCC 122
C FL+C T++ +CC
Sbjct: 1631 CRVFLHCVTTLKIPEGRVCC 1690
>LOC_Os03g04520:12003.t00329:unspliced-genomic RNA recognition motif family protein, expressed|
Length = 8964
Score = 30.9 bits (61), Expect = 7.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2 / -3
Query: 362 STAIGSSHCSIHTGYADSLLSTFLT*EFTPRHLLGFIYYVIDKAPCRIIL 213
+TAI S S T DS+++ + PR LGF+Y I + C + +
Sbjct: 2059 ATAISLSISSPLTPLLDSIITNWFINPSFPRSFLGFLYCCITVSCCNLTM 1910
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 199,004,290
Number of extensions: 2862210
Number of successful extensions: 9354
Number of sequences better than 10.0: 16
Length of query: 192
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 144
Effective length of database: 52,912,542
Effective search space: 7619406048
Effective search space used: 7619406048
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)