ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf170f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os12g37850:12012.t03466:unspliced-genomic expressed protein 81 6e-29
2LOC_Os11g03160:12011.t00207:unspliced-genomic transferase, t... 35 0.62
3LOC_Os09g03210:12009.t00219:unspliced-genomic expressed protein 35 0.62
4LOC_Os01g72520:12001.t06540:unspliced-genomic hydrolase, act... 33 1.6
5LOC_Os02g55640:12002.t05139:unspliced-genomic proteasome mat... 33 2.2
6LOC_Os01g72860:12001.t06572:unspliced-genomic MAC/Perforin d... 33 2.2
7LOC_Os01g47770:12001.t04223:unspliced-genomic nudC domain-co... 32 3.0
8LOC_Os04g49570:12004.t04471:unspliced-genomic glutamate rece... 31 3.7
9LOC_Os08g02190:12008.t00114:unspliced-genomic expressed protein 31 5.7
10LOC_Os03g50350:12003.t04377:unspliced-genomic coatomer subun... 31 5.7
11LOC_Os02g32690:12002.t02912:unspliced-genomic ATP binding pr... 31 5.7
12LOC_Os11g38890:12011.t03432:unspliced-genomic retrotransposo... 31 5.7
13LOC_Os07g07060:12007.t00585:unspliced-genomic prolyl-tRNA sy... 31 7.8
14LOC_Os03g57660:12003.t05029:unspliced-genomic glutamate carb... 31 7.8
15LOC_Os03g50340:12003.t04376:unspliced-genomic coatomer subun... 31 7.8
16LOC_Os03g04520:12003.t00329:unspliced-genomic RNA recognitio... 31 7.8

>LOC_Os12g37850:12012.t03466:unspliced-genomic expressed protein|
          Length = 2565
 Score = 75.8 bits (159), Expect(3) = 6e-29
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = -3 / -3

                                            
Query: 220  SSFIFCIFSGSVSCMFFLNCSLTMETRSPVLC 125
            SSFIFCIFSGSVSCMFFLNCSLT+ET SPVLC
Sbjct: 2083 SSFIFCIFSGSVSCMFFLNCSLTIETISPVLC 1988



 Score = 53.3 bits (110), Expect(3) = 6e-29
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = -3 / -3

                                           
Query: 313  IVYFQLS*PENLRPVIFSDSYIM*LIRPRAA 221
            IV FQ+S* ENLRPVIFSDSY M*LIRP AA
Sbjct: 2278 IV*FQIS*LENLRPVIFSDSYKM*LIRPLAA 2186



 Score = 41.8 bits (85), Expect(3) = 6e-29
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = -3 / -3

                                      
Query: 151  METRSPVLCC*LPMNLALLKHSRYNW 74
            ME   P +C * PMNLALLKHSRY++
Sbjct: 1147 MEK*KPNMCT*CPMNLALLKHSRYSY 1070



 Score = 80.8 bits (170), Expect(3) = 8e-29
 Identities = 31/35 (88%), Positives = 35/35 (100%)
 Frame = +3 / +3

                                               
Query: 117  SQQHNTGLLVSMVREQFKKNMHETDPEKIQKMKDD 221
            +Q+HNTGL+VSMVREQFKKNMHETDPEKIQKMKD+
Sbjct: 1980 TQKHNTGLIVSMVREQFKKNMHETDPEKIQKMKDE 2084



 Score = 58.8 bits (122), Expect(3) = 8e-29
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +3 / +3

                                             
Query: 222  AARGLINHIIYESEKMTGRKFSG*ES*K*TIGI 320
            AARGLINHI+YESEKMTGRKFS *E   *TI +
Sbjct: 2187 AARGLINHILYESEKMTGRKFSS*EIWN*TISV 2285



 Score = 24.9 bits (48), Expect(3) = 8e-29
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2 / +2

                         
Query: 332  LNSGLILWLLNCF 370
            +NS +ILWLLN F
Sbjct: 2300 VNSDVILWLLNYF 2338



 Score = 66.1 bits (138), Expect(2) = 3e-19
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -2 / -2

                                               
Query: 221  IILHFLYLLWISFMHVFLELFPHHGNKKPCIMLLT 117
            +ILHFLYLLWISFMHVFL+L P+H N KP I+ L+
Sbjct: 2084 LILHFLYLLWISFMHVFLKLLPYH*NNKPRIVFLS 1980



 Score = 48.3 bits (99), Expect(2) = 3e-19
 Identities = 23/57 (40%), Positives = 32/57 (56%)
 Frame = -2 / -2

                                                                     
Query: 392  MVLVSEEKNNSTAIGSSHCSIHTGYADSLLSTFLT*EFTPRHLLGFIYYVIDKAPCR 222
            +V   ++ N++T        +   + D L+  FLT*+F   HLL FI  VIDKAPCR
Sbjct: 2357 LVPKKKQSNSATTRSHHCLLLFIQHTDCLVPNFLT*KFASCHLLRFIQNVIDKAPCR 2187



 Score = 63.4 bits (132), Expect(2) = 4e-17
 Identities = 26/34 (76%), Positives = 29/34 (85%)
 Frame = +1 / +1

                                              
Query: 124  NIIQGFLFPW*GNSSRKTCMKLIQRRYRK*RMMR 225
            N I+G LF W*G+S RKTCMKLIQRRYRK*RM +
Sbjct: 1987 NTIRGLLFQW*GSSLRKTCMKLIQRRYRK*RMSK 2088



 Score = 44.1 bits (90), Expect(2) = 4e-17
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +2 / +2

                                          
Query: 221  CGTGPYQSHNI*IREDDGA*ILRLRKLKVD 310
            CG GPYQSH +*I EDD   I +LR L++D
Sbjct: 2186 CGKGPYQSHFV*I*EDDRTQIFKLRNLELD 2275



 Score = 57.0 bits (118), Expect(2) = 4e-13
 Identities = 26/34 (76%), Positives = 28/34 (82%)
 Frame = +2 / +2

                                              
Query: 119  SAT*YRASCFHGEGTVQEKHA*N*SREDTENEG* 220
            S T Y A CF+G+G V EKHA*N*SREDTENEG*
Sbjct: 1982 SETQYGAYCFNGKGAV*EKHA*N*SREDTENEG* 2083



 Score = 36.8 bits (74), Expect(2) = 4e-13
 Identities = 19/32 (59%), Positives = 22/32 (68%)
 Frame = +1 / +1

                                            
Query: 220  MRHGALSIT*YMNPRR*RGVNSQVKKVESRLS 315
            +R GALSIT  MN RR*+  N QVKK  +R S
Sbjct: 2185 VRQGALSITFCMNLRR*QDANFQVKKFGTRQS 2280



 Score = 42.8 bits (87), Expect(2) = 3e-07
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = -1 / -1

                                      
Query: 195  LDQFHACFS*TVPSPWKQEALYYVAD 118
            LDQFHACFS*T P P KQ A Y V++
Sbjct: 2058 LDQFHACFS*TAPLPLKQ*APYCVSE 1981



 Score = 34.5 bits (69), Expect(2) = 3e-07
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -1 / -1

                                      
Query: 309  STFNFLNLRIYAPSSSRIHILCD**G 232
            S+  FLNL+I   SSS+IH  CD**G
Sbjct: 2274 SSSKFLNLKICVLSSSQIHTKCD**G 2197



 Score = 39.1 bits (79), Expect = 0.026
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3 / +3

                                      
Query: 78   LYRECLRRAKFIGSQQHNTGLLVSMV 155
            LYRECLRRA+FIG Q H  G   S++
Sbjct: 1074 LYRECLRRARFIGHQVHIFGFHFSIL 1151



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>LOC_Os11g03160:12011.t00207:unspliced-genomic transferase, transferring glycosyl groups, putative, expressed|
          Length = 5354

 Score = 34.5 bits (69), Expect = 0.62
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3 / +3

                                      
Query: 217 SFIFCIFSGSVSCMFFLNCSLTMETRS 137
           ++I+ + + S +C+FFLNC   M+ RS
Sbjct: 408 TYIYMLLTSSPACLFFLNCQQGMDRRS 488



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>LOC_Os09g03210:12009.t00219:unspliced-genomic expressed protein|
          Length = 3069

 Score = 34.5 bits (69), Expect = 0.62
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3 / -2

                                                        
Query: 514  LHLNKTASA*HVWVDYIQKHSKMQLMKNHCFIKSTTNKSIRWSL 383
            LHL  T S * +    +++     L++NHC  K+  N+ + WS+
Sbjct: 1133 LHLELTTSV*ALQCKVLKEKYNSLLIRNHCEKKAPRNEQVDWSM 1002



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>LOC_Os01g72520:12001.t06540:unspliced-genomic hydrolase, acting on ester bonds, putative, expressed|
          Length = 4608

 Score = 33.1 bits (66), Expect = 1.6
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2 / -2

                                                                 
Query: 272  RHLLGFIYYVIDKAPCRIILHFLYLLWISFMHVFLELFPHHGNKKPCIMLLTT 114
            R+LLGF+      AP ++++  +  +    +H+F   FP  G +  C+  L T
Sbjct: 2861 RNLLGFLRLTRPHAPTQVVVGAVTAIHYCTIHLFF*GFPIMGQQARCVSCLLT 2703



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>LOC_Os02g55640:12002.t05139:unspliced-genomic proteasome maturation factor UMP1 family protein, expressed|
          Length = 2354

 Score = 32.7 bits (65), Expect = 2.2
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +2 / +3

                                        
Query: 284  LRLRKLKVDYRHILYELNSGLILWLLNC 367
            +RLR  K+++  I++EL SGL++ ++ C
Sbjct: 2145 IRLRSSKIEFNVIMFELMSGLLVAVVEC 2228



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>LOC_Os01g72860:12001.t06572:unspliced-genomic MAC/Perforin domain containing protein, expressed|
          Length = 4644

 Score = 32.7 bits (65), Expect = 2.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2 / +2

                                                                 
Query: 281  FTPRHLLGFIYYVIDKAPCRIILHFLYLLWISFMHVFLELFPHHGNKKPCIML 123
            F P   + F YYVI++     +  + Y L+ S+++    LFP   + K   ML
Sbjct: 3257 FVPTWYVEFFYYVIEQCLLTFL*FYSYSLYHSYINETCCLFP*ESSHKSACML 3415



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>LOC_Os01g47770:12001.t04223:unspliced-genomic nudC domain-containing protein 2, putative, expressed|
          Length = 3104

 Score = 32.2 bits (64), Expect = 3.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2 / +3

                                        
Query: 212  HFLYLLWISFMHVFLELFPHHGNKKPCI 129
            +FLY L I F   F E  P  GNKK C+
Sbjct: 1548 YFLYELSIQFSEQFDEWTPSSGNKKKCL 1631



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>LOC_Os04g49570:12004.t04471:unspliced-genomic glutamate receptor 3.3 precursor, putative, expressed|
          Length = 4830

 Score = 30.9 bits (61), Expect(2) = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3 / +1

                                 
Query: 226 AASSFIFCIFSGSVSCMFFLNC 161
           ++ SFIFC F GS+  +F   C
Sbjct: 421 SSGSFIFCFFGGSLQVLFLEEC 486



 Score = 22.6 bits (43), Expect(2) = 3.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3 / +2

                                
Query: 181  CMFFLNCSLTMETRSPVLCC 122
            C  FL+C  T++     +CC
Sbjct: 1631 CRVFLHCVTTLKIPEGRVCC 1690



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>LOC_Os08g02190:12008.t00114:unspliced-genomic expressed protein|
          Length = 6224

 Score = 31.3 bits (62), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2 / +1

                                     
Query: 428  VIFHQLHFTVLLDVIDPYMLSASCF 502
            ++FHQLHF +L ++ D   L   CF
Sbjct: 1750 ILFHQLHFILLSNI*DIMRLRCMCF 1824



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>LOC_Os03g50350:12003.t04377:unspliced-genomic coatomer subunit alpha, putative, expressed|
          Length = 5449

 Score = 31.3 bits (62), Expect = 5.7
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -2 / -2

                                                                        
Query: 308  LLSTFLT*EFTPRHLLGFIYYVIDKAPCRIILHFLYLLWISFMHVFLELFPHHGNKKPCI 129
            LL+T L    +    LG I  V+ K PC+++     LL ++  H   +  PH  + K  +
Sbjct: 4911 LLATALLLHLSSPPCLGLIRVVLQKHPCKVLCSSEVLLLVAQTHSASKHKPHMNSLKLAV 4732

                    
Query: 128  MLLTTDEL 105
              +++  L
Sbjct: 4731 SEISSQFL 4708



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>LOC_Os02g32690:12002.t02912:unspliced-genomic ATP binding protein, putative, expressed|
          Length = 15392

 Score = 31.3 bits (62), Expect = 5.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3 / +3

                                        
Query: 253  YIM*LIRPRAASSFIFCIFSGSVSCMFF 170
            YI+*L R R + +F FCIFS +    FF
Sbjct: 9060 YII*LFRIRMSQNFSFCIFSTN*HITFF 9143



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>LOC_Os11g38890:12011.t03432:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 5754

 Score = 31.3 bits (62), Expect = 5.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1 / -3

                                           
Query: 333  NSYRICR*STFNFLNLRIYAPSSSRIHILCD 241
            N+ R+C   TFN+++LR+   SS R +I  D
Sbjct: 5221 NAVRVCHLFTFNYVSLRVLLNSS*RANITKD 5129



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>LOC_Os07g07060:12007.t00585:unspliced-genomic prolyl-tRNA synthetase, putative, expressed|
          Length = 3702

 Score = 30.9 bits (61), Expect = 7.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3 / -3

                              
Query: 223 ASSFIFCIFSGSVSCMFFL 167
           +++ +FC+F G +SCM FL
Sbjct: 505 STNLLFCLFKGGMSCMTFL 449



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>LOC_Os03g57660:12003.t05029:unspliced-genomic glutamate carboxypeptidase 2, putative, expressed|
          Length = 7549

 Score = 30.9 bits (61), Expect = 7.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2 / +3

                                      
Query: 317  HILYELNSGLILWLLNCFSLPTQGPS 394
            HI Y  +   +LWL +C  L T GPS
Sbjct: 5802 HISYNTHHAHLLWLNSCGDLGTTGPS 5879



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>LOC_Os03g50340:12003.t04376:unspliced-genomic coatomer subunit alpha, putative, expressed|
          Length = 5318

 Score = 30.9 bits (61), Expect = 7.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2 / -1

                                                                     
Query: 308  LLSTFLT*EFTPRHLLGFIYYVIDKAPCRIILHFLYLLWISFMHVFLELFPHHGNKK 138
            LL+T L    +    LG I  V+ K PC+++     LL ++  H   +  PH  + K
Sbjct: 4682 LLATALLLHLSSPPCLGLIRVVLQKHPCKVLCSSEVLLLVAQTHSASKHKPHMNSLK 4512



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>LOC_Os03g04520:12003.t00329:unspliced-genomic RNA recognition motif family protein, expressed|
          Length = 8964

 Score = 30.9 bits (61), Expect = 7.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2 / -3

                                                              
Query: 362  STAIGSSHCSIHTGYADSLLSTFLT*EFTPRHLLGFIYYVIDKAPCRIIL 213
            +TAI  S  S  T   DS+++ +      PR  LGF+Y  I  + C + +
Sbjct: 2059 ATAISLSISSPLTPLLDSIITNWFINPSFPRSFLGFLYCCITVSCCNLTM 1910


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 199,004,290
Number of extensions: 2862210
Number of successful extensions: 9354
Number of sequences better than 10.0: 16
Length of query: 192
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 144
Effective length of database: 52,912,542
Effective search space: 7619406048
Effective search space used: 7619406048
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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