>dbj|AK178481.1| Mus musculus cDNA, clone:Y0G0106O08, strand:unspecified
          Length = 462
 Score = 48.1 bits (24), Expect = 0.089
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 597 agaaggagaaaggaacaggggaaa 620
           ||||||||||||||||||||||||
Sbjct: 193 agaaggagaaaggaacaggggaaa 170

>gb|AC145364.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0062D09, complete sequence
          Length = 160244

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 1173  gaacctaatatagttgaggatgagaat 1199
             ||||||||||| |||||||||||||||
Sbjct: 39503 gaacctaatatggttgaggatgagaat 39529

>gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015F11,
             complete sequence
          Length = 177574

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 1173  gaacctaatatagttgaggatgagaat 1199
             ||||||||||| |||||||||||||||
Sbjct: 53100 gaacctaatatggttgaggatgagaat 53074

>gb|AC135417.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1314_A05,
             complete sequence
          Length = 109853

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 1173  gaacctaatatagttgaggatgagaat 1199
             ||||||||||| |||||||||||||||
Sbjct: 81014 gaacctaatatggttgaggatgagaat 80988

>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0095P22, complete sequence
          Length = 162766

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 729  gatggatcgaggttggatgagtcaaccaaga 759
            ||||||||||| |||||||||| ||||||||
Sbjct: 7056 gatggatcgagattggatgagtgaaccaaga 7026

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 1173    gaacctaatatagttgaggatgagaat 1199
               ||||||||||| |||||||||||||||
Sbjct: 8560068 gaacctaatatggttgaggatgagaat 8560042



 Score = 46.1 bits (23), Expect = 0.35
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 729      gatggatcgaggttggatgagtcaaccaaga 759
                ||||||||||| |||||||||| ||||||||
Sbjct: 24205947 gatggatcgagattggatgagtgaaccaaga 24205917

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 729     gatggatcgaggttggatgagtcaaccaaga 759
               ||||||||||| |||||||||| ||||||||
Sbjct: 3284589 gatggatcgagattggatgagtgaaccaaga 3284559

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 729      gatggatcgaggttggatgagtcaaccaaga 759
                ||||||||||| |||||||||| ||||||||
Sbjct: 23774783 gatggatcgagattggatgagtgaaccaaga 23774753

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 1173     gaacctaatatagttgaggatgagaat 1199
                ||||||||||| |||||||||||||||
Sbjct: 15967349 gaacctaatatggttgaggatgagaat 15967323

>dbj|AP005729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
           BAC clone:OSJNBa0069P02
          Length = 163033

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 729 gatggatcgaggttggatgagtcaaccaaga 759
           ||||||||||| |||||||||| ||||||||
Sbjct: 521 gatggatcgagattggatgagtgaaccaaga 491

>gb|AC092617.2| Homo sapiens BAC clone RP11-217D23 from 2, complete sequence
          Length = 140096

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 939  gtttgccatggagatgattacag 961
            |||||||||||||||||||||||
Sbjct: 6644 gtttgccatggagatgattacag 6622

>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0556B08
          Length = 136775

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 729   gatggatcgaggttggatgagtcaaccaaga 759
             ||||||||||| |||||||||| ||||||||
Sbjct: 14448 gatggatcgagattggatgagtgaaccaaga 14418

>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0029C06
          Length = 156500

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 729    gatggatcgaggttggatgagtcaaccaaga 759
              ||||||||||| |||||||||| ||||||||
Sbjct: 122859 gatggatcgagattggatgagtgaaccaaga 122829

>dbj|AP005892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0011D16
          Length = 177329

 Score = 46.1 bits (23), Expect = 0.35
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 729    gatggatcgaggttggatgagtcaaccaaga 759
              ||||||||||| |||||||||| ||||||||
Sbjct: 160902 gatggatcgagattggatgagtgaaccaaga 160872

>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete
              sequence
          Length = 3214944

 Score = 44.1 bits (22), Expect = 1.4
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 964    aaccatcatttgcatttgctca 985
              ||||||||||||||||||||||
Sbjct: 692641 aaccatcatttgcatttgctca 692620

>gb|DQ471302.1| Carya cathayensis putative chloroplast chlorophyll a/b-binding
           protein (ABC) mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 993

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 457 tttgtggcataagcccaagca 477
           |||||||||||||||||||||
Sbjct: 785 tttgtggcataagcccaagca 765

>ref|XM_985999.1| PREDICTED: Mus musculus similar to nuclear receptor coactivator 6
            interacting protein (LOC330731), mRNA
          Length = 3654

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1175 acctaatatagttgaggatga 1195
            |||||||||||||||||||||
Sbjct: 1014 acctaatatagttgaggatga 1034

>ref|XM_282816.6| PREDICTED: Mus musculus similar to nuclear receptor coactivator 6
            interacting protein (LOC330731), mRNA
          Length = 3654

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1175 acctaatatagttgaggatga 1195
            |||||||||||||||||||||
Sbjct: 1014 acctaatatagttgaggatga 1034

>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 498     acaacactgttccattcttcc 518
               |||||||||||||||||||||
Sbjct: 4402190 acaacactgttccattcttcc 4402210

>gb|AC163331.8| Mus musculus chromosome 5, clone RP23-50G20, complete sequence
          Length = 257982

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 589    agggagacagaaggagaaagg 609
              |||||||||||||||||||||
Sbjct: 141668 agggagacagaaggagaaagg 141648

>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence
          Length = 218755

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 592    gagacagaaggagaaaggaac 612
              |||||||||||||||||||||
Sbjct: 150323 gagacagaaggagaaaggaac 150303

>gb|AC154314.2| Mus musculus BAC clone RP23-347J22 from chromosome 13, complete sequence
          Length = 189556

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 786    ggagaaatttctgtcttttgc 806
              |||||||||||||||||||||
Sbjct: 101577 ggagaaatttctgtcttttgc 101597

>ref|NM_054089.3| Mus musculus nuclear receptor coactivator 6 interacting protein
            (Ncoa6ip), mRNA
 gb|BC075728.1| Mus musculus nuclear receptor coactivator 6 interacting protein, mRNA
            (cDNA clone MGC:78321 IMAGE:6513964), complete cds
          Length = 4370

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1175 acctaatatagttgaggatga 1195
            |||||||||||||||||||||
Sbjct: 1013 acctaatatagttgaggatga 1033

>gb|AC127374.4| Mus musculus BAC clone RP23-46G11 from chromosome 8, complete sequence
          Length = 180143

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1175  acctaatatagttgaggatga 1195
             |||||||||||||||||||||
Sbjct: 84719 acctaatatagttgaggatga 84699

>gb|BC058183.1| Mus musculus nuclear receptor coactivator 6 interacting protein, mRNA
            (cDNA clone IMAGE:5324421), partial cds
          Length = 1997

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1175 acctaatatagttgaggatga 1195
            |||||||||||||||||||||
Sbjct: 1036 acctaatatagttgaggatga 1056

>dbj|AK044895.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130010L05 product:nuclear
            receptor coactivator 6 interacting protein, full insert
            sequence
          Length = 3028

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1175 acctaatatagttgaggatga 1195
            |||||||||||||||||||||
Sbjct: 1033 acctaatatagttgaggatga 1053

>dbj|AK030953.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830468L16 product:nuclear receptor
            coactivator 6 interacting protein, full insert sequence
          Length = 4314

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1175 acctaatatagttgaggatga 1195
            |||||||||||||||||||||
Sbjct: 1022 acctaatatagttgaggatga 1042

>gb|AF389908.1|AF389908 Mus musculus PIMT (Pimt) mRNA, complete cds
          Length = 2648

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1175 acctaatatagttgaggatga 1195
            |||||||||||||||||||||
Sbjct: 901  acctaatatagttgaggatga 921

>emb|AL929371.6| Mouse DNA sequence from clone RP23-176O5 on chromosome 11 Contains a
             ribosomal protein S2 (Rps2) pseudogene, a novel gene, an
             apurinic/apyrimidinic endonuclease 2 (Apex2) pseudogene,
             the Rtn4 gene for reticulon 4, the 3' end of the gene for
             a novel protein (C230094A16Rik) (MGC38936) and a CpG
             island, complete sequence
          Length = 212042

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1151  tggtcttgaattggagagtat 1171
             |||||||||||||||||||||
Sbjct: 50244 tggtcttgaattggagagtat 50264

>gb|AC149053.3| Mus musculus BAC clone RP24-502E20 from chromosome 7, complete sequence
          Length = 221785

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1041  ggagaaggcaggcatggaagg 1061
             |||||||||||||||||||||
Sbjct: 94574 ggagaaggcaggcatggaagg 94554

>gb|AC138398.9| Mus musculus chromosome 5, clone RP23-309P20, complete sequence
          Length = 190846

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 589    agggagacagaaggagaaagg 609
              |||||||||||||||||||||
Sbjct: 122571 agggagacagaaggagaaagg 122591

>emb|AL732617.24| Mouse DNA sequence from clone RP23-196C23 on chromosome 4, complete
              sequence
          Length = 226501

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1175   acctaatatagttgaggatga 1195
              |||||||||||||||||||||
Sbjct: 184220 acctaatatagttgaggatga 184240

>emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on chromosome 4, complete
              sequence
          Length = 179370

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 587    ttagggagacagaaggagaaaggaa 611
              ||||||||| |||||||||||||||
Sbjct: 146575 ttagggagatagaaggagaaaggaa 146599

>gb|U01964.1|GMU01964 Glycine max cv. Dare photosystem II type I chlorophyll a/b-binding
            protein (lhcb1*7) gene, complete cds
          Length = 1882

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 457  tttgtggcataagcccaagca 477
            |||||||||||||||||||||
Sbjct: 1533 tttgtggcataagcccaagca 1513

>dbj|AB006081.1| Fagus crenata mRNA for chlorophyll a/b-binding protein, complete
           cds
          Length = 1010

 Score = 42.1 bits (21), Expect = 5.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 457 tttgtggcataagcccaagca 477
           |||||||||||||||||||||
Sbjct: 823 tttgtggcataagcccaagca 803


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 239,418,633
Number of extensions: 12178437
Number of successful extensions: 223624
Number of sequences better than 10.0: 35
Number of HSP's gapped: 223624
Number of HSP's successfully gapped: 36
Length of query: 1442
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1419
Effective length of database: 18,503,978,556
Effective search space: 26257145570964
Effective search space used: 26257145570964
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)