ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf170b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK071655:Os06g0320300 42 5e-04
2AK058736:Os06g0320300 42 5e-04
3Os02g0717200:Os02g0717200 39 0.007
4AK064702: 31 1.1
5AK121464:Os01g0126200 30 3.1
6AK109483:Os09g0129400 29 4.0
7Os11g0212300:Os11g0212300 29 5.3
8AK071422:Os01g0306200 28 6.9
9AK070420:Os01g0959000 28 6.9

>AK071655:Os06g0320300 |
          Length = 145
 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +2

Query: 596 TKSNGFRRDGSRRKNSTPRRAAEAG 670
           T+SNGFR++GSRRK STPRRAAEAG
Sbjct: 121 TRSNGFRQNGSRRK-STPRRAAEAG 144



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>AK058736:Os06g0320300 |
          Length = 145

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +2

Query: 596 TKSNGFRRDGSRRKNSTPRRAAEAG 670
           T+SNGFR++GSRRK STPRRAAEAG
Sbjct: 121 TRSNGFRQNGSRRK-STPRRAAEAG 144



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>Os02g0717200:Os02g0717200 |
          Length = 142

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +2

Query: 596 TKSNGFRRDGSRRKNSTPRRAAEAG 670
           T++NGFR+ GSRRKN  PRRAAEAG
Sbjct: 115 TRTNGFRQIGSRRKNK-PRRAAEAG 138



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>AK064702: |
          Length = 158

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -2

Query: 692 TDHTLTLLPPRLLAGEWSSSGGFRPAGT 609
           T  T T L PR L+  WSSS G R AGT
Sbjct: 25  TSITCTPLRPRRLSAAWSSSAGSRVAGT 52



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>AK121464:Os01g0126200 |
          Length = 585

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 364 PERLQRTAAPPVVGRSGPLAATAAVIIIPRIIGRFLGLPSRPTHTRAEREK 212
           P+R QR   PP+  R  PL +    + +PR  G    +P R    R  R +
Sbjct: 272 PQRQQRALLPPLPLRRPPLRSRRLRLRLPRQAGAHPRVPPRAVRDRRRRRR 322



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>AK109483:Os09g0129400 |
          Length = 138

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 634 PAASVPPEPVRFRPHVIPVVVADV 563
           P AS+PP P R RP  +P  +AD+
Sbjct: 58  PPASLPPSPPRARPTPLPPALADL 81



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>Os11g0212300:Os11g0212300 |
          Length = 702

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = -3

Query: 637 LPAASVPPEPVRFRPHV---IPVVVADVQNRLKASLHLQMXXXXXXXXXPLHASVSNFTA 467
           +P  + P EP     ++   + ++  D QN L   L +            +H+S +   A
Sbjct: 386 IPIDAHPTEPWILTGNIFGSVDILNCDTQNHLLLILKISGNIVMFAYASEIHSSAAKLIA 445

Query: 466 NRAVGVLGWHDRFLAV 419
            +   V+G+HD F+ V
Sbjct: 446 RKQWLVVGYHDGFIRV 461



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>AK071422:Os01g0306200 |
          Length = 147

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 751 NKSK*PTSVAHHINAHFLNPPITHSHYSRLGCSPGSGVLPAASVPPEPVRFR 596
           ++S  P + A   N H   P    +  SRL  +P +   P+ S PP P  FR
Sbjct: 35  DRSTRPRATAADHNKHQQPPFSARAVSSRLAMAPKTTTDPSTSTPPPPGAFR 86



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>AK070420:Os01g0959000 |
          Length = 432

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 375 PTKKRMTSPRARRPQTARNRSCQPRT 452
           P ++   SP  RRP  +R+RS  PRT
Sbjct: 348 PPRRHSRSPPPRRPPHSRSRSISPRT 373


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 23,591,023
Number of extensions: 505872
Number of successful extensions: 1822
Number of sequences better than 10.0: 9
Number of HSP's gapped: 1817
Number of HSP's successfully gapped: 9
Length of query: 306
Length of database: 15,399,855
Length adjustment: 100
Effective length of query: 206
Effective length of database: 11,395,755
Effective search space: 2347525530
Effective search space used: 2347525530
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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