Clone Information

BLAST Search Result

Clone Name	FLbaf169o20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001053008.1\| Oryza sativa (japonica cultivar-group) Os02g...	283	1e-72
2	gb\|DQ078760.1\| Zea mays clone Zmcoi6.3 cold-inducible unknown mRNA	208	5e-50
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	161	1e-35
4	dbj\|AP004801.3\| Oryza sativa (japonica cultivar-group) genomic D...	161	1e-35
5	dbj\|AK226302.1\| Arabidopsis thaliana mRNA for hypothetical prote...	76	5e-10
6	ref\|NM_116335.2\| Arabidopsis thaliana unknown protein (AT4G01050...	76	5e-10
7	gb\|AY124870.1\| Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, comp...	76	5e-10
8	gb\|AY057701.1\| Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, comp...	76	5e-10
9	gb\|AY057565.1\| Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, comp...	76	5e-10
10	emb\|CT831402.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	46	0.46
11	emb\|CT831401.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	46	0.46
12	ref\|NM_001058063.1\| Oryza sativa (japonica cultivar-group) Os03g...	46	0.46
13	gb\|AC090871.11\| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno...	46	0.46
14	gb\|AY526867.1\| Oryza sativa (japonica cultivar-group) putative z...	46	0.46
15	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.46
16	dbj\|AK108205.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.46
17	ref\|XM_855609.1\| PREDICTED: Canis familiaris hypothetical protei...	44	1.8
18	emb\|AL161491.2\|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, c...	44	1.8
19	gb\|AF007269.1\|IG002N01 Arabidopsis thaliana BAC IG002N01	44	1.8
20	gb\|DQ279078.1\| Chlamydomonas reinhardtii PhoB (PHOB) gene, compl...	44	1.8
21	gb\|DQ279077.1\| Chlamydomonas reinhardtii PhoB (PHOB) mRNA, compl...	44	1.8
22	gb\|CP000386.1\| Rubrobacter xylanophilus DSM 9941, complete genome	42	7.1
23	gb\|AY714813.1\| Cercopithecine herpesvirus 2, complete genome	42	7.1
24	dbj\|AP008931.1\| Rhodococcus erythropolis PR4 plasmid pREL1, comp...	42	7.1
25	ref\|XM_752669.1\| Ustilago maydis 521 hypothetical protein (UM016...	42	7.1
26	gb\|AE005950.1\| Caulobacter crescentus CB15 section 276 of 359 of...	42	7.1
27	dbj\|AB080801.1\| Sphingomonas paucimobilis rhaM gene for alpha-L-...	42	7.1
28	gb\|AC097634.2\| Homo sapiens chromosome 3 clone RP11-154H23, comp...	42	7.1
29	emb\|AL939120.1\|SCO939120 Streptomyces coelicolor A3(2) complete ...	42	7.1
30	emb\|AJ457980.1\|TAE457980 Triticum aestivum mRNA for ferredoxin-N...	42	7.1
31	gb\|AC084292.23\|AC084292 Mus musculus 1 BAC RP23-254E8 (Roswell P...	42	7.1
32	gb\|AC105402.5\| Homo sapiens BAC clone RP11-1415G13 from 2, compl...	42	7.1
33	gb\|AC148178.35\| Medicago truncatula clone mth2-5b21, complete se...	42	7.1
34	dbj\|AP004473.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	42	7.1
35	dbj\|AB096204.1\| Cercopithecine herpesvirus 2 UL21, UL20, UL19, U...	42	7.1
36	gb\|AC156586.2\| Glomus intraradices clone JGIAHZS-25D8, complete ...	42	7.1
37	gb\|AC156584.2\| Glomus intraradices clone JGIAHZS-13J8, complete ...	42	7.1
38	gb\|AC156582.2\| Glomus intraradices clone JGIAHZS-13A23, complete...	42	7.1
39	gb\|AC105073.16\| Mus musculus chromosome 1, clone RP23-288J11, co...	42	7.1
40	gb\|AC138111.3\| Mus musculus BAC clone RP24-262B6 from 1, complet...	42	7.1

>ref|NM_001053008.1| Oryza sativa (japonica cultivar-group) Os02g0257300 (Os02g0257300)
           mRNA, complete cds
          Length = 1437
 Score =  283 bits (143), Expect = 1e-72
 Identities = 305/359 (84%)
 Strand = Plus / Plus

                                                                       
Query: 475 gccgcgtaccggaggcttctggaggagcctgacgcgcagctcgtcgacatcaggccgctc 534
           ||||||||||||  |||  |||||||||| | ||||||||| || ||||||||||||| |
Sbjct: 403 gccgcgtaccgggcgctggtggaggagcccggcgcgcagctggtggacatcaggccgccc 462

                                                                       
Query: 535 aaggacgcccgggaggtcggctcgccggacatctcggaggccaagaagaaggccgtggcc 594
              ||||||||| ||  |||| |||| ||| ||   ||||||||||||||||| |  |||
Sbjct: 463 ggcgacgcccggcagagcggcgcgcccgacctccgcgaggccaagaagaaggcggccgcc 522

                                                                       
Query: 595 gtgccctacgacggcgaggacaagaacggtttcttgaagaagcttgcgctgaggtttaag 654
           |||||||||||||| |||||||||||||| ||| | ||||||||  |||||||||| |||
Sbjct: 523 gtgccctacgacggggaggacaagaacggattcctcaagaagctgtcgctgaggttcaag 582

                                                                       
Query: 655 gacccggagaacaccacattgatcattcttgacaagtttgatgggaactctgaactggtt 714
           ||||| ||||||||||||||| |||| ||||||||||||||||||||||| || ||||||
Sbjct: 583 gaccccgagaacaccacattggtcatccttgacaagtttgatgggaactccgagctggtt 642

                                                                       
Query: 715 gctgagcttgtcacatccaatggctataaaggtgcttttgcggtaaaggatggtgcggaa 774
           ||||||||||| ||| | ||||| || |||| ||||||||| || ||||||||||| || 
Sbjct: 643 gctgagcttgtaacagcgaatggttacaaagctgcttttgcagtgaaggatggtgcagag 702

                                                                      
Query: 775 ggacctcggggatggcagagcagtgatcttccctggattgctcccaagaagggattcag 833
           ||||  || ||||||| |||||||  |||||||||||  ||||||||||||||||||||
Sbjct: 703 ggacgccgaggatggctgagcagtagtcttccctggacagctcccaagaagggattcag 761



 Score =  264 bits (133), Expect = 1e-66
 Identities = 217/245 (88%)
 Strand = Plus / Plus

                                                                        
Query: 871  ggtttgcctgtcacaattggtcttgctgcagctactggtttgggaatacttgcctacgca 930
            ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 793  ggtttgcctgtcacacttgggcttgctgcagctactggtttgggaatacttgcctacaca 852

                                                                        
Query: 931  gagatagaaaccgtgctgcagtttctgggttcagctgccattgtccaggttgtggcaagc 990
            |||||||| || ||||| |||||| |||| |||||||||||||||||| | || ||||||
Sbjct: 853  gagatagagactgtgcttcagtttttggggtcagctgccattgtccagctagttgcaagc 912

                                                                        
Query: 991  aagctcgtctatgccgaggaccgaaagaagaccctgcaacagattgatgacttctttaac 1050
            || ||| | ||||| |||||||||||||  |||||  ||||||| ||||| ||||| |||
Sbjct: 913  aaactcatatatgctgaggaccgaaagagaacccttaaacagatcgatgatttcttcaac 972

                                                                        
Query: 1051 aagaagattgcaccaaaggagcttgttgatgaaattaaggaaatcgggcaggctctcctg 1110
            || ||| |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 973  aaaaaggttgctccaaaggagcttgttgatgaaataaaggaaatcggtcaggctctgctg 1032

                 
Query: 1111 ccttc 1115
            |||||
Sbjct: 1033 ccttc 1037



 Score = 65.9 bits (33), Expect = 5e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 325 ctcccagacctcggcctcggcgggttggtggacttcgtcgcgcagaacccgct 377
           ||||| |||||||||||||||||| || | |||||||| ||||||||||||||
Sbjct: 253 ctcccggacctcggcctcggcggggtgctcgacttcgtggcgcagaacccgct 305



 Score = 56.0 bits (28), Expect = 5e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 232 ggcggcagcgccgctctcgccgctcctctctcctacgaggagatgctgcggctctc 287
           |||| ||||||||| |||||||| || || ||||||||||||| |||||| |||||
Sbjct: 148 ggcgccagcgccgcgctcgccgcgccgctgtcctacgaggagacgctgcgtctctc 203



 Score = 50.1 bits (25), Expect = 0.029
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 1425 agttaactcagcaccggtagcagaagccg 1453
            ||||||||||||||| |||||||||||||
Sbjct: 1308 agttaactcagcaccagtagcagaagccg 1336



 Score = 46.1 bits (23), Expect = 0.46
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 1309 tcaccatttgcaaattatccagatctcaaaccacc 1343
            ||||||| | |||||||||| ||||||||||||||
Sbjct: 1189 tcaccatatacaaattatccggatctcaaaccacc 1223



 Score = 42.1 bits (21), Expect = 7.1
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                     
Query: 1485 acctctttcgccatatgcgaactatccagatctcaaaccgccggcctctccttcgcc 1541
            ||||||||| |||||| | || ||||| ||||||||||| ||  |||| ||||||||
Sbjct: 1182 acctctttcaccatatacaaattatccggatctcaaaccaccatcctccccttcgcc 1238



 Score = 42.1 bits (21), Expect = 7.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 1483 agacctctttcgccatatgcgaactatccagatctcaaacc 1523
            |||||||||||||| ||  |||| |||||||| ||||||||
Sbjct: 1366 agacctctttcgccttacccgaattatccagacctcaaacc 1406

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>gb|DQ078760.1| Zea mays clone Zmcoi6.3 cold-inducible unknown mRNA
          Length = 321

 Score =  208 bits (105), Expect = 5e-50
 Identities = 261/313 (83%)
 Strand = Plus / Plus

                                                                       
Query: 605 acggcgaggacaagaacggtttcttgaagaagcttgcgctgaggtttaaggacccggaga 664
           |||| |||||||| ||||| |||||||| ||| |  | || | ||| |||||||||||||
Sbjct: 9   acggggaggacaaaaacggattcttgaaaaagttgacactaaagttcaaggacccggaga 68

                                                                       
Query: 665 acaccacattgatcattcttgacaagtttgatgggaactctgaactggttgctgagcttg 724
           |||||||  ||||||| |||||||| |||||||||||||| ||||| | |||||||||||
Sbjct: 69  acaccacgctgatcatccttgacaaatttgatgggaactccgaactagctgctgagcttg 128

                                                                       
Query: 725 tcacatccaatggctataaaggtgcttttgcggtaaaggatggtgcggaaggacctcggg 784
           | ||| ||||||| || |||| ||||||||| || ||||||||||| ||||||   || |
Sbjct: 129 tgacagccaatggttacaaagctgcttttgcagtgaaggatggtgcagaaggaagccgag 188

                                                                       
Query: 785 gatggcagagcagtgatcttccctggattgctcccaagaagggattcagtttggacttcg 844
           ||||| |||||||| | ||||||||||  |||||    || |||||||| || ||||| |
Sbjct: 189 gatggaagagcagtaaccttccctggaaggctccgccaaaaggattcagctttgacttgg 248

                                                                       
Query: 845 gtgagctatttggggatggttctcaaggtttgcctgtcacaattggtcttgctgcagcta 904
           | ||  ||||||||||||||||  | ||||||||||  ||||||||||| ||||||||||
Sbjct: 249 gcgaattatttggggatggttcagatggtttgcctgcgacaattggtctcgctgcagcta 308

                        
Query: 905 ctggtttgggaat 917
           |||||||||||||
Sbjct: 309 ctggtttgggaat 321

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score =  161 bits (81), Expect = 1e-35
 Identities = 183/217 (84%)
 Strand = Plus / Plus

                                                                           
Query: 475     gccgcgtaccggaggcttctggaggagcctgacgcgcagctcgtcgacatcaggccgctc 534
               ||||||||||||  |||  |||||||||| | ||||||||| || ||||||||||||| |
Sbjct: 8872601 gccgcgtaccgggcgctggtggaggagcccggcgcgcagctggtggacatcaggccgccc 8872660

                                                                           
Query: 535     aaggacgcccgggaggtcggctcgccggacatctcggaggccaagaagaaggccgtggcc 594
                  ||||||||| ||  |||| |||| ||| ||   ||||||||||||||||| |  |||
Sbjct: 8872661 ggcgacgcccggcagagcggcgcgcccgacctccgcgaggccaagaagaaggcggccgcc 8872720

                                                                           
Query: 595     gtgccctacgacggcgaggacaagaacggtttcttgaagaagcttgcgctgaggtttaag 654
               |||||||||||||| |||||||||||||| ||| | ||||||||  |||||||||| |||
Sbjct: 8872721 gtgccctacgacggggaggacaagaacggattcctcaagaagctgtcgctgaggttcaag 8872780

                                                    
Query: 655     gacccggagaacaccacattgatcattcttgacaagt 691
               ||||| ||||||||||||||| |||| ||||||||||
Sbjct: 8872781 gaccccgagaacaccacattggtcatccttgacaagt 8872817



 Score =  101 bits (51), Expect = 9e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                           
Query: 871     ggtttgcctgtcacaattggtcttgctgcagctactggtttgggaatacttgcctacgca 930
               ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 8873570 ggtttgcctgtcacacttgggcttgctgcagctactggtttgggaatacttgcctacaca 8873629

                  
Query: 931     gag 933
               |||
Sbjct: 8873630 gag 8873632



 Score = 81.8 bits (41), Expect = 8e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                           
Query: 690     gtttgatgggaactctgaactggttgctgagcttgtcacatccaatggctataaaggtgc 749
               ||||||||||||||| || ||||||||||||||||| ||| | ||||| || |||| |||
Sbjct: 8873141 gtttgatgggaactccgagctggttgctgagcttgtaacagcgaatggttacaaagctgc 8873200

                                    
Query: 750     ttttgcggtaaaggatggtgc 770
               |||||| || |||||||||||
Sbjct: 8873201 ttttgcagtgaaggatggtgc 8873221



 Score = 79.8 bits (40), Expect = 3e-11
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                           
Query: 1007    aggaccgaaagaagaccctgcaacagattgatgacttctttaacaagaagattgcaccaa 1066
               ||||||||||||  |||||  ||||||| ||||| ||||| ||||| ||| |||| ||||
Sbjct: 8873874 aggaccgaaagagaacccttaaacagatcgatgatttcttcaacaaaaaggttgctccaa 8873933

                                       
Query: 1067    aggagcttgttgatgaaattaagg 1090
               ||||||||||||||||||| ||||
Sbjct: 8873934 aggagcttgttgatgaaataaagg 8873957



 Score = 65.9 bits (33), Expect = 5e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                    
Query: 325     ctcccagacctcggcctcggcgggttggtggacttcgtcgcgcagaacccgct 377
               ||||| |||||||||||||||||| || | |||||||| ||||||||||||||
Sbjct: 8872451 ctcccggacctcggcctcggcggggtgctcgacttcgtggcgcagaacccgct 8872503



 Score = 60.0 bits (30), Expect = 3e-05
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                           
Query: 932     agatagaaaccgtgctgcagtttctgggttcagctgccattgtccaggttgtggcaagca 991
               ||||||| || ||||| |||||| |||| |||||||||||||||||| | || |||||||
Sbjct: 8873716 agatagagactgtgcttcagtttttggggtcagctgccattgtccagctagttgcaagca 8873775

                                 
Query: 992     agctcgtctatgccgagg 1009
               | ||| | ||||| ||||
Sbjct: 8873776 aactcatatatgctgagg 8873793



 Score = 58.0 bits (29), Expect = 1e-04
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 789     gcagagcagtgatcttccctggattgctcccaagaagggattcag 833
               ||||||||||  |||||||||||  ||||||||||||||||||||
Sbjct: 8873342 gcagagcagtagtcttccctggacagctcccaagaagggattcag 8873386



 Score = 56.0 bits (28), Expect = 5e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                       
Query: 232     ggcggcagcgccgctctcgccgctcctctctcctacgaggagatgctgcggctctc 287
               |||| ||||||||| |||||||| || || ||||||||||||| |||||| |||||
Sbjct: 8872346 ggcgccagcgccgcgctcgccgcgccgctgtcctacgaggagacgctgcgtctctc 8872401



 Score = 50.1 bits (25), Expect = 0.029
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 1425    agttaactcagcaccggtagcagaagccg 1453
               ||||||||||||||| |||||||||||||
Sbjct: 8874866 agttaactcagcaccagtagcagaagccg 8874894

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>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0613F08
          Length = 142937

 Score =  161 bits (81), Expect = 1e-35
 Identities = 183/217 (84%)
 Strand = Plus / Plus

                                                                         
Query: 475   gccgcgtaccggaggcttctggaggagcctgacgcgcagctcgtcgacatcaggccgctc 534
             ||||||||||||  |||  |||||||||| | ||||||||| || ||||||||||||| |
Sbjct: 77619 gccgcgtaccgggcgctggtggaggagcccggcgcgcagctggtggacatcaggccgccc 77678

                                                                         
Query: 535   aaggacgcccgggaggtcggctcgccggacatctcggaggccaagaagaaggccgtggcc 594
                ||||||||| ||  |||| |||| ||| ||   ||||||||||||||||| |  |||
Sbjct: 77679 ggcgacgcccggcagagcggcgcgcccgacctccgcgaggccaagaagaaggcggccgcc 77738

                                                                         
Query: 595   gtgccctacgacggcgaggacaagaacggtttcttgaagaagcttgcgctgaggtttaag 654
             |||||||||||||| |||||||||||||| ||| | ||||||||  |||||||||| |||
Sbjct: 77739 gtgccctacgacggggaggacaagaacggattcctcaagaagctgtcgctgaggttcaag 77798

                                                  
Query: 655   gacccggagaacaccacattgatcattcttgacaagt 691
             ||||| ||||||||||||||| |||| ||||||||||
Sbjct: 77799 gaccccgagaacaccacattggtcatccttgacaagt 77835



 Score =  101 bits (51), Expect = 9e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                         
Query: 871   ggtttgcctgtcacaattggtcttgctgcagctactggtttgggaatacttgcctacgca 930
             ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 78588 ggtttgcctgtcacacttgggcttgctgcagctactggtttgggaatacttgcctacaca 78647

                
Query: 931   gag 933
             |||
Sbjct: 78648 gag 78650



 Score = 81.8 bits (41), Expect = 8e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                         
Query: 690   gtttgatgggaactctgaactggttgctgagcttgtcacatccaatggctataaaggtgc 749
             ||||||||||||||| || ||||||||||||||||| ||| | ||||| || |||| |||
Sbjct: 78159 gtttgatgggaactccgagctggttgctgagcttgtaacagcgaatggttacaaagctgc 78218

                                  
Query: 750   ttttgcggtaaaggatggtgc 770
             |||||| || |||||||||||
Sbjct: 78219 ttttgcagtgaaggatggtgc 78239



 Score = 79.8 bits (40), Expect = 3e-11
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                         
Query: 1007  aggaccgaaagaagaccctgcaacagattgatgacttctttaacaagaagattgcaccaa 1066
             ||||||||||||  |||||  ||||||| ||||| ||||| ||||| ||| |||| ||||
Sbjct: 78892 aggaccgaaagagaacccttaaacagatcgatgatttcttcaacaaaaaggttgctccaa 78951

                                     
Query: 1067  aggagcttgttgatgaaattaagg 1090
             ||||||||||||||||||| ||||
Sbjct: 78952 aggagcttgttgatgaaataaagg 78975



 Score = 65.9 bits (33), Expect = 5e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 325   ctcccagacctcggcctcggcgggttggtggacttcgtcgcgcagaacccgct 377
             ||||| |||||||||||||||||| || | |||||||| ||||||||||||||
Sbjct: 77469 ctcccggacctcggcctcggcggggtgctcgacttcgtggcgcagaacccgct 77521



 Score = 60.0 bits (30), Expect = 3e-05
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                         
Query: 932   agatagaaaccgtgctgcagtttctgggttcagctgccattgtccaggttgtggcaagca 991
             ||||||| || ||||| |||||| |||| |||||||||||||||||| | || |||||||
Sbjct: 78734 agatagagactgtgcttcagtttttggggtcagctgccattgtccagctagttgcaagca 78793

                               
Query: 992   agctcgtctatgccgagg 1009
             | ||| | ||||| ||||
Sbjct: 78794 aactcatatatgctgagg 78811



 Score = 58.0 bits (29), Expect = 1e-04
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 789   gcagagcagtgatcttccctggattgctcccaagaagggattcag 833
             ||||||||||  |||||||||||  ||||||||||||||||||||
Sbjct: 78360 gcagagcagtagtcttccctggacagctcccaagaagggattcag 78404



 Score = 56.0 bits (28), Expect = 5e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 232   ggcggcagcgccgctctcgccgctcctctctcctacgaggagatgctgcggctctc 287
             |||| ||||||||| |||||||| || || ||||||||||||| |||||| |||||
Sbjct: 77364 ggcgccagcgccgcgctcgccgcgccgctgtcctacgaggagacgctgcgtctctc 77419



 Score = 50.1 bits (25), Expect = 0.029
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 1425  agttaactcagcaccggtagcagaagccg 1453
             ||||||||||||||| |||||||||||||
Sbjct: 79884 agttaactcagcaccagtagcagaagccg 79912

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>dbj|AK226302.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL05-11-M08
          Length = 1688

 Score = 75.8 bits (38), Expect = 5e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 622 ggtttcttgaagaagcttgcgctgaggtttaaggacccggagaacaccacattgatcatt 681
           |||||| ||||||||||| |  ||| |||||| || || ||||||||||||||   ||||
Sbjct: 663 ggtttcctgaagaagctttctttgaagtttaaagatcctgagaacaccacattatacatt 722

                                                 
Query: 682 cttgacaagtttgatgggaactctgaactggttgctga 719
           || |||||||||||||| |||||||| || ||||||||
Sbjct: 723 ctggacaagtttgatggaaactctgagcttgttgctga 760

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>ref|NM_116335.2| Arabidopsis thaliana unknown protein (AT4G01050) mRNA, complete cds
          Length = 1842

 Score = 75.8 bits (38), Expect = 5e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 622 ggtttcttgaagaagcttgcgctgaggtttaaggacccggagaacaccacattgatcatt 681
           |||||| ||||||||||| |  ||| |||||| || || ||||||||||||||   ||||
Sbjct: 662 ggtttcctgaagaagctttctttgaagtttaaagatcctgagaacaccacattatacatt 721

                                                 
Query: 682 cttgacaagtttgatgggaactctgaactggttgctga 719
           || |||||||||||||| |||||||| || ||||||||
Sbjct: 722 ctggacaagtttgatggaaactctgagcttgttgctga 759

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>gb|AY124870.1| Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds
          Length = 1401

 Score = 75.8 bits (38), Expect = 5e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 622 ggtttcttgaagaagcttgcgctgaggtttaaggacccggagaacaccacattgatcatt 681
           |||||| ||||||||||| |  ||| |||||| || || ||||||||||||||   ||||
Sbjct: 556 ggtttcctgaagaagctttctttgaagtttaaagatcctgagaacaccacattatacatt 615

                                                 
Query: 682 cttgacaagtttgatgggaactctgaactggttgctga 719
           || |||||||||||||| |||||||| || ||||||||
Sbjct: 616 ctggacaagtttgatggaaactctgagcttgttgctga 653

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>gb|AY057701.1| Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds
          Length = 1765

 Score = 75.8 bits (38), Expect = 5e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 622 ggtttcttgaagaagcttgcgctgaggtttaaggacccggagaacaccacattgatcatt 681
           |||||| ||||||||||| |  ||| |||||| || || ||||||||||||||   ||||
Sbjct: 631 ggtttcctgaagaagctttctttgaagtttaaagatcctgagaacaccacattatacatt 690

                                                 
Query: 682 cttgacaagtttgatgggaactctgaactggttgctga 719
           || |||||||||||||| |||||||| || ||||||||
Sbjct: 691 ctggacaagtttgatggaaactctgagcttgttgctga 728

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>gb|AY057565.1| Arabidopsis thaliana AT4g01050/F2N1_31 mRNA, complete cds
          Length = 1765

 Score = 75.8 bits (38), Expect = 5e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 622 ggtttcttgaagaagcttgcgctgaggtttaaggacccggagaacaccacattgatcatt 681
           |||||| ||||||||||| |  ||| |||||| || || ||||||||||||||   ||||
Sbjct: 631 ggtttcctgaagaagctttctttgaagtttaaagatcctgagaacaccacattatacatt 690

                                                 
Query: 682 cttgacaagtttgatgggaactctgaactggttgctga 719
           || |||||||||||||| |||||||| || ||||||||
Sbjct: 691 ctggacaagtttgatggaaactctgagcttgttgctga 728

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>emb|CT831402.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI017E13, full
           insert sequence
          Length = 785

 Score = 46.1 bits (23), Expect = 0.46
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 366 gcagaacccgctcgtcgtcgccg 388
           |||||||||||||||||||||||
Sbjct: 531 gcagaacccgctcgtcgtcgccg 553

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>emb|CT831401.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI008B18, full
           insert sequence
          Length = 748

 Score = 46.1 bits (23), Expect = 0.46
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 366 gcagaacccgctcgtcgtcgccg 388
           |||||||||||||||||||||||
Sbjct: 531 gcagaacccgctcgtcgtcgccg 553

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>ref|NM_001058063.1| Oryza sativa (japonica cultivar-group) Os03g0793000 (Os03g0793000)
           mRNA, complete cds
          Length = 766

 Score = 46.1 bits (23), Expect = 0.46
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 366 gcagaacccgctcgtcgtcgccg 388
           |||||||||||||||||||||||
Sbjct: 532 gcagaacccgctcgtcgtcgccg 554

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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
             sequence
          Length = 162497

 Score = 46.1 bits (23), Expect = 0.46
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 366   gcagaacccgctcgtcgtcgccg 388
             |||||||||||||||||||||||
Sbjct: 65393 gcagaacccgctcgtcgtcgccg 65415

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>gb|AY526867.1| Oryza sativa (japonica cultivar-group) putative zinc finger
           transcription factor (ZFP48) mRNA, complete cds
          Length = 614

 Score = 46.1 bits (23), Expect = 0.46
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 366 gcagaacccgctcgtcgtcgccg 388
           |||||||||||||||||||||||
Sbjct: 532 gcagaacccgctcgtcgtcgccg 554

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.46
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 366      gcagaacccgctcgtcgtcgccg 388
                |||||||||||||||||||||||
Sbjct: 32769024 gcagaacccgctcgtcgtcgccg 32769002

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>dbj|AK108205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D04, full
           insert sequence
          Length = 766

 Score = 46.1 bits (23), Expect = 0.46
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 366 gcagaacccgctcgtcgtcgccg 388
           |||||||||||||||||||||||
Sbjct: 532 gcagaacccgctcgtcgtcgccg 554

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>ref|XM_855609.1| PREDICTED: Canis familiaris hypothetical protein LOC608111
           (LOC608111), mRNA
          Length = 780

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 177 gcgcctcccccttggaggcccc 198
           ||||||||||||||||||||||
Sbjct: 536 gcgcctcccccttggaggcccc 557

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>emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3
          Length = 196149

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                         
Query: 622   ggtttcttgaagaagcttgcgctgaggtttaaggacccggagaacaccacattgatcatt 681
             |||||| ||||||||||| |  ||| |||||| || || ||||||||||||||   ||||
Sbjct: 70143 ggtttcctgaagaagctttctttgaagtttaaagatcctgagaacaccacattatacatt 70202

                       
Query: 682   cttgacaagt 691
             || |||||||
Sbjct: 70203 ctggacaagt 70212

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>gb|AF007269.1|IG002N01 Arabidopsis thaliana BAC IG002N01
          Length = 124225

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                          
Query: 622    ggtttcttgaagaagcttgcgctgaggtttaaggacccggagaacaccacattgatcatt 681
              |||||| ||||||||||| |  ||| |||||| || || ||||||||||||||   ||||
Sbjct: 117552 ggtttcctgaagaagctttctttgaagtttaaagatcctgagaacaccacattatacatt 117493

                        
Query: 682    cttgacaagt 691
              || |||||||
Sbjct: 117492 ctggacaagt 117483

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>gb|DQ279078.1| Chlamydomonas reinhardtii PhoB (PHOB) gene, complete cds; nuclear
            gene for plastid product
          Length = 8755

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 568  tcggaggccaagaagaaggccg 589
            ||||||||||||||||||||||
Sbjct: 6552 tcggaggccaagaagaaggccg 6573

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>gb|DQ279077.1| Chlamydomonas reinhardtii PhoB (PHOB) mRNA, complete cds; nuclear
            gene for plastid product
          Length = 3033

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 568  tcggaggccaagaagaaggccg 589
            ||||||||||||||||||||||
Sbjct: 2113 tcggaggccaagaagaaggccg 2134

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>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome
          Length = 3225748

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 298     gccggtggtgggggtgacggg 318
               |||||||||||||||||||||
Sbjct: 1270118 gccggtggtgggggtgacggg 1270138

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>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome
          Length = 150715

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 61    ccgccgacatcgccgggcgccaccg 85
             ||||||||||||||| |||||||||
Sbjct: 36038 ccgccgacatcgccgcgcgccaccg 36014

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>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence
          Length = 271577

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 537    ggacgcccgggaggtcggctc 557
              |||||||||||||||||||||
Sbjct: 260526 ggacgcccgggaggtcggctc 260506

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>ref|XM_752669.1| Ustilago maydis 521 hypothetical protein (UM01615.1) partial mRNA
          Length = 1710

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1251 cccagctgcagaagccagcac 1271
            |||||||||||||||||||||
Sbjct: 1257 cccagctgcagaagccagcac 1277

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>gb|AE005950.1| Caulobacter crescentus CB15 section 276 of 359 of the complete genome
          Length = 12754

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   gggcctcttcgccacgctcgg 224
             |||||||||||||||||||||
Sbjct: 10722 gggcctcttcgccacgctcgg 10702

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>dbj|AB080801.1| Sphingomonas paucimobilis rhaM gene for alpha-L-rhamnosidase,
            complete cds
          Length = 7394

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   ccgctcccgccgacatcgccg 75
            |||||||||||||||||||||
Sbjct: 4463 ccgctcccgccgacatcgccg 4483

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>gb|AC097634.2| Homo sapiens chromosome 3 clone RP11-154H23, complete sequence
          Length = 193553

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 896    ctgcagctactggtttgggaatact 920
              ||||||||||||||||| |||||||
Sbjct: 160304 ctgcagctactggtttgagaatact 160280

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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 569    cggaggccaagaagaaggccg 589
              |||||||||||||||||||||
Sbjct: 149687 cggaggccaagaagaaggccg 149667

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>emb|AJ457980.1|TAE457980 Triticum aestivum mRNA for ferredoxin-NADP(H) oxidoreductase (fnr
           gene), clone 2
          Length = 1092

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 603 cgacggcgaggacaagaacgg 623
           |||||||||||||||||||||
Sbjct: 706 cgacggcgaggacaagaacgg 686

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>gb|AC084292.23|AC084292 Mus musculus 1 BAC RP23-254E8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 192003

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 300   cggtggtgggggtgacgggttctccctcc 328
             ||||||||| ||||| |||||||||||||
Sbjct: 18616 cggtggtggtggtgaggggttctccctcc 18588

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>gb|AC105402.5| Homo sapiens BAC clone RP11-1415G13 from 2, complete sequence
          Length = 65449

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1242  accagcagccccagctgcaga 1262
             |||||||||||||||||||||
Sbjct: 17324 accagcagccccagctgcaga 17304

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>gb|AC148178.35| Medicago truncatula clone mth2-5b21, complete sequence
          Length = 115185

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1035  tgatgacttctttaacaagaagatt 1059
             ||||||||||||||| |||||||||
Sbjct: 38139 tgatgacttctttaagaagaagatt 38115

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>dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10J15, TM0007,
             complete sequence
          Length = 92741

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 838   gacttcggtgagctatttggg 858
             |||||||||||||||||||||
Sbjct: 72931 gacttcggtgagctatttggg 72911

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>dbj|AB096204.1| Cercopithecine herpesvirus 2 UL21, UL20, UL19, UL18, UL15 genes for
            tegument protein, integral membrane protein, major capsid
            protein, capsid protein, DNA packaging protein, partial
            and complete cds
          Length = 7766

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 61   ccgccgacatcgccgggcgccaccg 85
            ||||||||||||||| |||||||||
Sbjct: 5976 ccgccgacatcgccgcgcgccaccg 6000

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>gb|AC156586.2| Glomus intraradices clone JGIAHZS-25D8, complete sequence
          Length = 38073

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 723   tgtcacatccaatggctataa 743
             |||||||||||||||||||||
Sbjct: 12224 tgtcacatccaatggctataa 12244

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>gb|AC156584.2| Glomus intraradices clone JGIAHZS-13J8, complete sequence
          Length = 39396

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 723   tgtcacatccaatggctataa 743
             |||||||||||||||||||||
Sbjct: 35731 tgtcacatccaatggctataa 35751

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>gb|AC156582.2| Glomus intraradices clone JGIAHZS-13A23, complete sequence
          Length = 32636

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 723   tgtcacatccaatggctataa 743
             |||||||||||||||||||||
Sbjct: 16275 tgtcacatccaatggctataa 16295

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>gb|AC105073.16| Mus musculus chromosome 1, clone RP23-288J11, complete sequence
          Length = 210509

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 963    agctgccattgtccaggttgt 983
              |||||||||||||||||||||
Sbjct: 108400 agctgccattgtccaggttgt 108380

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>gb|AC138111.3| Mus musculus BAC clone RP24-262B6 from 1, complete sequence
          Length = 138380

 Score = 42.1 bits (21), Expect = 7.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 300   cggtggtgggggtgacgggttctccctcc 328
             ||||||||| ||||| |||||||||||||
Sbjct: 24720 cggtggtggtggtgaggggttctccctcc 24748


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 274,225,889
Number of extensions: 14642769
Number of successful extensions: 288351
Number of sequences better than 10.0: 40
Number of HSP's gapped: 288347
Number of HSP's successfully gapped: 63
Length of query: 1870
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1847
Effective length of database: 18,503,978,556
Effective search space: 34176848392932
Effective search space used: 34176848392932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result