ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf166o23 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os03g12670:12003.t01065:unspliced-genomic expressed protein| Length = 2722 Score = 36.8 bits (74), Expect = 0.45 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +2 / +3 Query: 830 GPCHVGCARLAGHKTIKSIF 889 G CHVGCAR+AGH+ +F Sbjct: 741 GLCHVGCARMAGHRNKDDLF 800 Score = 35.9 bits (72), Expect = 0.85 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -2 / -1 Query: 876 IVLWPAKRAHPTWQGP 829 ++ WPA RAHPTWQ P Sbjct: 787 LLRWPAMRAHPTWQRP 740
>LOC_Os12g15470:12012.t01402:unspliced-genomic serine carboxypeptidase 1 precursor, putative, expressed| Length = 5108 Score = 31.8 bits (63), Expect(2) = 0.50 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 / +3 Query: 917 VRSPPRKHHQIYFLLSCGLPSERTRHGKGRPTLPMY 810 +R+P HH + LP+ RT G+ RP LP + Sbjct: 39 IRAPQLSHHHRGLHCATLLPTTRTIDGQARPPLPCF 146 Score = 28.6 bits (56), Expect(2) = 0.50 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = -1 / +3 Query: 499 RV*RINRFSHHKQNVTKSLGLRDRRHVFGEANRPPQERQHRIRMAQRAP 353 R+ R+ R ++++ G R R G RPP E R+R AP Sbjct: 171 RLPRLRRRRRRRRSMRGRAGERGREERPGIRRRPPVEALRRVRTRASAP 317
>LOC_Os03g13180:12003.t01113:unspliced-genomic peroxidase 54 precursor, putative, expressed| Length = 1544 Score = 36.3 bits (73), Expect = 0.62 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 / +2 Query: 1242 TWWTSAFIFWFDPKNDNSEIPTGKPLMQHRPENFLVH 1352 TWWT++ + W P +S PT P P ++ VH Sbjct: 521 TWWTASRLPWRTPAPASSPAPTSSPSPPRSPSSWSVH 631
>LOC_Os04g47150:12004.t04242:unspliced-genomic subtilisin-like protease precursor, putative, expressed| Length = 2896 Score = 35.4 bits (71), Expect = 1.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 / +1 Query: 457 VTKSLGLRDRRHVFGEANRPPQERQHRIRMAQRAPPKR 344 V + GLR RRH G RP R+H + +A+R +R Sbjct: 901 VLRGEGLRPRRHTGGGGRRPRGRRRHPVAVARRRAGRR 1014
>LOC_Os01g73200:12001.t06602:unspliced-genomic peroxidase 12 precursor, putative, expressed| Length = 1296 Score = 35.0 bits (70), Expect = 1.6 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -3 / +1 Query: 968 PWQGGEPGQNRNK*IVPVRSPPRKHHQIYFLLSCGLPSERTRHGK 834 P G+ R + P+R R+H ++FL LPS R HG+ Sbjct: 619 PRSAGQAQARRPRPRRPLRRAHRRHRALHFLRQAPLPSSRPHHGQ 753
>LOC_Os04g42730:12004.t03819:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5672 Score = 34.5 bits (69), Expect = 2.2 Identities = 13/22 (59%), Positives = 18/22 (81%) Frame = +3 / +2 Query: 1341 FLVHLNIRFILPWCVHNLVVLR 1406 F+V+LN+R IL W VH +V+LR Sbjct: 2942 FMVYLNLRKILIWFVHRVVMLR 3007
>LOC_Os11g20470:12011.t01816:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5699 Score = 34.1 bits (68), Expect = 3.0 Identities = 13/22 (59%), Positives = 18/22 (81%) Frame = +3 / +1 Query: 1341 FLVHLNIRFILPWCVHNLVVLR 1406 F+V+LN+R IL W VH +V+LR Sbjct: 2944 FVVYLNLRKILIWFVHRVVMLR 3009
>LOC_Os08g28060:12008.t02563:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 4820 Score = 34.1 bits (68), Expect = 3.0 Identities = 13/22 (59%), Positives = 18/22 (81%) Frame = +3 / +2 Query: 1341 FLVHLNIRFILPWCVHNLVVLR 1406 F+V+LN+R IL W VH +V+LR Sbjct: 2306 FVVYLNLRKILIWFVHRVVMLR 2371
>LOC_Os09g38960:12009.t03363:unspliced-genomic potassium transporter 11, putative, expressed| Length = 6250 Score = 34.1 bits (68), Expect = 3.0 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 / +1 Query: 1489 SSLCTAC*SSKFICILVDLRTGACPEVAGAS 1581 +S C +C*S +IC + D + CP V S Sbjct: 4282 NSSCNSC*SGHYICNIFDYQASTCPRVLSPS 4374
>LOC_Os04g33740:12004.t03050:unspliced-genomic beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative,| expressed Length = 4892 Score = 34.1 bits (68), Expect = 3.0 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 / -2 Query: 894 PPNILFIVLWPAKRAHPTWQGPSYPTNVLVHQV 796 P L ++ WP ++ PTW P +P N L H + Sbjct: 2749 PSQPLDLLDWPLQQLLPTWVQPHFPRNRLKHHI 2651
>LOC_Os11g27880:12011.t02402:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1882 Score = 33.6 bits (67), Expect = 4.2 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = +3 / +3 Query: 1341 FLVHLNIRFILPWCVHNLVVLRR 1409 F+V LN+R IL W VH +V+LRR Sbjct: 1521 FVVCLNLR*ILIWFVHRVVMLRR 1589
>LOC_Os08g26450:12008.t02411:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4974 Score = 33.6 bits (67), Expect = 4.2 Identities = 12/22 (54%), Positives = 18/22 (81%) Frame = +3 / +2 Query: 1341 FLVHLNIRFILPWCVHNLVVLR 1406 F+V+LN+R IL W VH +++LR Sbjct: 2888 FVVYLNLRKILIWFVHRVIMLR 2953
>LOC_Os03g13420:12003.t01136:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4068 Score = 33.6 bits (67), Expect = 4.2 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +3 / +1 Query: 1341 FLVHLNIRFILPWCVHNLVVLR 1406 F+V LN+R IL W VH +V+LR Sbjct: 2179 FMVRLNLRKILIWFVHRVVMLR 2244
>LOC_Os12g02870:12012.t00180:unspliced-genomic DELLA protein GAI1, putative, expressed| Length = 3586 Score = 33.6 bits (67), Expect = 4.2 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -1 / +1 Query: 481 RFSHHKQNVTKSLGLRDRRHVFGEANRPPQERQHRIRMAQRAPPKRRDNP 332 R HH + +SL LR R G A+ + R R + PP+R+ P Sbjct: 814 RHRHHPRRSPRSLPLRQRSPTSGVASLSVRSRSPTSRSRRSPPPRRKPPP 963
>LOC_Os08g16000:12008.t01474:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6988 Score = 33.6 bits (67), Expect = 4.2 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 / -3 Query: 768 IISLPTQLPFCSVRRQTSR 712 I+S+PTQLP CSVR Q R Sbjct: 3413 ILSIPTQLPECSVRHQIHR 3357
>LOC_Os02g21620:12002.t01951:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 7115 Score = 30.9 bits (61), Expect(2) = 5.2 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 / -3 Query: 780 PHMRIISLPTQLPFCSVRRQTSRKHGS 700 PH+ S PT LPF + QTSR G+ Sbjct: 1038 PHVNR*SSPTYLPFLPISTQTSRAAGN 958 Score = 26.3 bits (51), Expect(2) = 5.2 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -3 / -3 Query: 536 FPGDKHPQRHKLT 498 FP D+HP H LT Sbjct: 138 FPADRHPSSHPLT 100
>LOC_Os12g24650:12012.t02189:unspliced-genomic leucine aminopeptidase 1, chloroplast precursor, putative,| expressed Length = 5220 Score = 33.1 bits (66), Expect = 5.7 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -3 / +2 Query: 905 PRKHHQIYFLLSCGLPSERTRHGKGR 828 PR+ Q + +LSCGLP R H GR Sbjct: 800 PRRRWQQHAVLSCGLPEHRRDHRGGR 877
>LOC_Os08g25450:12008.t02312:unspliced-genomic hypothetical protein| Length = 561 Score = 33.1 bits (66), Expect = 5.7 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -3 / -1 Query: 908 PPRKHHQIYFLLSCGLPSERTRH 840 PP KHH L C LPS +T H Sbjct: 243 PPPKHHSTMHLSHCRLPSRKTGH 175
>LOC_Os11g27110:12011.t02326:unspliced-genomic expressed protein| Length = 1353 Score = 33.1 bits (66), Expect = 5.7 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -1 / -1 Query: 442 GLRDRRHVFGEANRPPQERQHRIRMAQRAP 353 G R RR + GEA+R P+E++ R R+ + P Sbjct: 582 GARRRRRLDGEAHRSPREQRRRDRLERHKP 493
>LOC_Os10g30070:12010.t02341:unspliced-genomic sodium/potassium/calcium exchanger 6 precursor, putative, expressed| Length = 1918 Score = 33.1 bits (66), Expect = 5.7 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 / +1 Query: 466 KQNVTKSLGLRDRRHVFGEANRPPQERQHRIRMAQRAPPKR 344 +Q + G DR H PP + +HR +A R PP+R Sbjct: 1108 EQGAVEQAGGGDRGHHGARPPLPPLQPRHRHHLAPRCPPRR 1230
>LOC_Os04g12060:12004.t01030:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 3755 Score = 33.1 bits (66), Expect = 5.7 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -2 / +2 Query: 822 PTNVLVHQVVQYARPHMRIISLPTQLPFCSVRRQTSRKHG 703 P+ LV QV+ R H RI L QLP +++RQ + G Sbjct: 3230 PSRHLVRQVLPQLRRHQRIHRLREQLPRGALQRQQRHRQG 3349
>LOC_Os03g52880:12003.t04610:unspliced-genomic transposon protein, putative, Mutator sub-class, expressed| Length = 3031 Score = 33.1 bits (66), Expect = 5.7 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +2 / +1 Query: 449 FCDILLVMAESVDASDPSAYAAVDVYLRGTP 541 FC++ L + + D Y AVD+YL+ P Sbjct: 1663 FCELALALPDHARVYDDGVYRAVDIYLKAHP 1755
>LOC_Os01g47360:12001.t04184:unspliced-genomic GATA zinc finger family protein| Length = 890 Score = 33.1 bits (66), Expect = 5.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -1 / +3 Query: 775 HAHHQLTNTITFLQCSETDKQETRII 698 H H TNT +QC+ KQ TRI+ Sbjct: 462 HNIHNYTNTYKLMQCARVHKQHTRIL 539
>LOC_Os10g02120:12010.t00107:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5879 Score = 32.7 bits (65), Expect = 7.9 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +3 / +1 Query: 1341 FLVHLNIRFILPWCVHNLVVLR 1406 F+V LN+R IL W VH +V+LR Sbjct: 3130 FMVCLNVRKILIWFVHRVVMLR 3195
>LOC_Os08g10940:12008.t00976:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5520 Score = 32.7 bits (65), Expect = 7.9 Identities = 13/22 (59%), Positives = 18/22 (81%) Frame = +3 / +1 Query: 1341 FLVHLNIRFILPWCVHNLVVLR 1406 F+V LN+R IL W VH++V+LR Sbjct: 982 FVVCLNLRKILIWFVHHIVMLR 1047
>LOC_Os06g48530:12006.t04539:unspliced-genomic expressed protein| Length = 7044 Score = 32.7 bits (65), Expect = 7.9 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 / -1 Query: 1353 LNIRFILPWCVHNLVVLRR*ITCSPSLLGPCCIQLFS 1463 LN++++ P VH V+ ++ C PS PCC FS Sbjct: 1056 LNVKYL*PQGVH*QVLTKQGC*CLPSRTAPCCSLEFS 946
>LOC_Os06g34560:12006.t03152:unspliced-genomic RING-H2 finger protein ATL2G precursor, putative| Length = 1763 Score = 32.7 bits (65), Expect = 7.9 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = -3 / -3 Query: 914 RSPPRKHHQIYFLLSCGLPSERTRHGKGR 828 RSPP +HH F L G P R G GR Sbjct: 1572 RSPPSRHHPRSFQLHKGRPGGGPRRGAGR 1486
>LOC_Os11g31670:12011.t02764:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1641 Score = 32.7 bits (65), Expect = 7.9 Identities = 13/36 (36%), Positives = 15/36 (41%) Frame = -2 / -3 Query: 807 VHQVVQYARPHMRIISLPTQLPFCSVRRQTSRKHGS 700 +H+ VQ RPH P QLP C H S Sbjct: 1585 IHRTVQRCRPHQHQWEHPQQLPLCHPHHHHQHHHRS 1478
>LOC_Os11g28500:12011.t02462:unspliced-genomic ent-kaurene synthase-like protein 1, putative| Length = 2202 Score = 32.7 bits (65), Expect = 7.9 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 / +3 Query: 838 PCRVRSLGRPQDNKKYIWWCLRGGDRTGTI 927 PC LG P KY W+ L G R G + Sbjct: 867 PCHSNELGNPCYQNKYRWYFLPSGGRIGNV 956
>LOC_Os11g06400:12011.t00532:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 7923 Score = 32.7 bits (65), Expect = 7.9 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = -2 / -1 Query: 843 TWQGPSYPTNVLVHQVVQYARPHMRIISLPTQLPFCSVRRQTSR 712 T GP P +H +AR +R+ P +PFC R + R Sbjct: 4569 TTSGPHQPCAPCLHNCDTHARETVRVPPSPRTIPFCPGRAHSGR 4438
>LOC_Os10g36710:12010.t02949:unspliced-genomic CDPK-related protein kinase, putative, expressed| Length = 5156 Score = 32.7 bits (65), Expect = 7.9 Identities = 23/81 (28%), Positives = 27/81 (33%) Frame = -1 / +2 Query: 586 GRGHHKPVKMKQQRRRRSPEINIHSGIS*RV*RINRFSHHKQNVTKSLGLRDRRHVFGEA 407 GRG P ++ RRR P SG R R S G R R Sbjct: 236 GRGARSPRASHRRLRRRRPRRGGSSGGRSRRRRRRSTSRRPSRAASGSGRRPRPRRSRPR 415 Query: 406 NRPPQERQHRIRMAQRAPPKR 344 +RPP+ R PP R Sbjct: 416 SRPPRSRSRSTGAGAAPPPGR 478
>LOC_Os08g41030:12008.t03833:unspliced-genomic ethylene-responsive transcription factor 3, putative, expressed| Length = 906 Score = 32.7 bits (65), Expect = 7.9 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 / -2 Query: 829 RPLPCRVRSLGRPQDNKKYIWWC 897 RPL C R G+PQ + +WWC Sbjct: 593 RPLRCPWRGGGQPQP*RPRLWWC 525
>LOC_Os06g32720:12006.t02969:unspliced-genomic zinc finger CCCH type domain-containing protein ZFN-like 3, putative,| expressed Length = 5040 Score = 32.7 bits (65), Expect = 7.9 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 / -1 Query: 551 LFHLHWFMMPTAN*YLLQRQSICF 622 ++H HW M+PT N + L +Q + F Sbjct: 2355 VYHRHWLMLPTQNMFELSQQIVVF 2284
>LOC_Os04g46450:12004.t04175:unspliced-genomic zinc finger, C3HC4 type family protein, expressed| Length = 8283 Score = 32.7 bits (65), Expect = 7.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 / +2 Query: 744 PFCSVRRQTSRKHGSFDRQTGTIYRM 667 PFCS +TS K G R T T+Y + Sbjct: 8084 PFCSFGEKTSNKRGGASRHTETLYHI 8161
>LOC_Os01g47240:12001.t04172:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3237 Score = 32.7 bits (65), Expect = 7.9 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = -1 / -3 Query: 415 GEANRPPQERQHRIRMAQRAPPKRRDNP 332 GE RPP ER R+ R PPKR P Sbjct: 1606 GEPGRPPPERLPRLGGPGRPPPKRYHQP 1523
>LOC_Os01g45020:12001.t03961:unspliced-genomic F-box protein interaction domain containing protein, expressed| Length = 7145 Score = 32.7 bits (65), Expect = 7.9 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = -1 / -1 Query: 472 HHKQNVTKSLGLRDRRHVFGEANRPPQERQHRIRMAQRAPPKRR 341 HH+ N K + RH G RPP R + + A P RR Sbjct: 1928 HHRSNPMKHKIKKKNRHQMGGRRRPPGPRPLGVCASSAATPARR 1797
>LOC_Os06g04889:12006.t04909:unspliced-genomic expressed protein| Length = 855 Score = 26.3 bits (51), Expect(2) = 7.9 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = -1 / -2 Query: 577 HHKPVKMKQQRRRRSPEINI 518 HH P + QQR R+ P+ ++ Sbjct: 290 HHPPHRRHQQRERQQPDAHL 231 Score = 23.5 bits (45), Expect(2) = 7.9 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -3 / -2 Query: 647 LAEMRRPRESISTVVGED 594 LAE RRP + + V G+D Sbjct: 377 LAERRRPAAAAAPVAGDD 324
>LOC_Os11g08314:12011.t00722:unspliced-genomic ankyrin-like protein, putative, expressed| Length = 7163 Score = 24.9 bits (48), Expect(2) = 9.0 Identities = 11/29 (37%), Positives = 12/29 (41%) Frame = +1 / +2 Query: 823 VGRPLPCRVRSLGRPQDNKKYIWWCLRGG 909 V + LP V G D WWC R G Sbjct: 2165 VYQELPEDVEIWGGEFDRSTVSWWCCRDG 2251 Score = 24.4 bits (47), Expect(2) = 9.0 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +2 / +3 Query: 782 RAYCTT*CTSTLVG*DGPCHVGC 850 RA C+T CT+ G G GC Sbjct: 2034 RATCSTRCTARGAGCRGTSRAGC 2102
>LOC_Os06g50070:12006.t04691:unspliced-genomic expressed protein| Length = 938 Score = 27.2 bits (53), Expect(2) = 9.3 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = +2 / +1 Query: 986 VLLFPRHHLKCATSLHSKY 1042 ++LF HH C + +SKY Sbjct: 862 IMLFLNHHTSCTMTFNSKY 918 Score = 26.3 bits (51), Expect(2) = 9.3 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 / +1 Query: 488 ASDPSAYAAVDVYLRGTPPPLLFHLHW 568 +S PSA A+ TPPPL LH+ Sbjct: 538 SSSPSATASSSSPRAPTPPPLTKELHY 618
>LOC_Os08g20420:12008.t01860:unspliced-genomic MGD2, putative, expressed| Length = 3581 Score = 27.2 bits (53), Expect(2) = 9.5 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +2 / +3 Query: 311 VDAFQISWVISSFWWSTLCHPNPMLS 388 +D+ +++W+IS+ WW P LS Sbjct: 594 IDSRKLTWLISARWWPGS*GTTPTLS 671 Score = 22.1 bits (42), Expect(2) = 9.5 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = +1 / +3 Query: 487 CVRPVSLCRCGCLS 528 C R S RCGC S Sbjct: 678 CTR*CSTSRCGCSS 719 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 665,298,086 Number of extensions: 10487925 Number of successful extensions: 41578 Number of sequences better than 10.0: 40 Length of query: 567 Length of database: 55,613,886 Length adjustment: 51 Effective length of query: 516 Effective length of database: 52,743,708 Effective search space: 27215753328 Effective search space used: 27215753328 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
